data_6RQF # _model_server_result.job_id Bbk3vLIJiYLSCnXCKni2CA _model_server_result.datetime_utc '2025-03-06 09:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":202}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 CA N N ? 18 KA N N ? 18 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . CA 18 168.294 126.031 188.044 1 70.14 ? O6 SQD 202 L 1 HETATM 2 C C44 SQD . . . CA 18 168.932 124.893 187.499 1 70.14 ? C44 SQD 202 L 1 HETATM 3 C C45 SQD . . . CA 18 168.567 124.743 186.027 1 70.14 ? C45 SQD 202 L 1 HETATM 4 C C46 SQD . . . CA 18 167.13 124.256 185.88 1 70.14 ? C46 SQD 202 L 1 HETATM 5 O O47 SQD . . . CA 18 168.756 125.946 185.309 1 70.14 ? O47 SQD 202 L 1 HETATM 6 C C7 SQD . . . CA 18 169.944 126.703 185.458 1 70.14 ? C7 SQD 202 L 1 HETATM 7 O O49 SQD . . . CA 18 170.92 126.386 184.8 1 70.14 ? O49 SQD 202 L 1 HETATM 8 C C8 SQD . . . CA 18 169.817 128.152 185.932 1 70.14 ? C8 SQD 202 L 1 HETATM 9 C C9 SQD . . . CA 18 168.354 128.584 185.837 1 70.14 ? C9 SQD 202 L 1 HETATM 10 C C10 SQD . . . CA 18 168.27 130.086 185.618 1 70.14 ? C10 SQD 202 L 1 HETATM 11 C C11 SQD . . . CA 18 167.433 130.342 184.364 1 70.14 ? C11 SQD 202 L 1 HETATM 12 C C12 SQD . . . CA 18 167.177 131.826 184.186 1 70.14 ? C12 SQD 202 L 1 HETATM 13 C C13 SQD . . . CA 18 165.976 131.999 183.256 1 70.14 ? C13 SQD 202 L 1 HETATM 14 C C14 SQD . . . CA 18 165.71 133.481 183.013 1 70.14 ? C14 SQD 202 L 1 HETATM 15 C C15 SQD . . . CA 18 165.986 133.825 181.555 1 70.14 ? C15 SQD 202 L 1 HETATM 16 C C16 SQD . . . CA 18 165.027 133.067 180.645 1 70.14 ? C16 SQD 202 L 1 HETATM 17 C C17 SQD . . . CA 18 165.67 132.816 179.278 1 70.14 ? C17 SQD 202 L 1 HETATM 18 C C18 SQD . . . CA 18 166.083 134.15 178.647 1 70.14 ? C18 SQD 202 L 1 HETATM 19 C C19 SQD . . . CA 18 166.294 133.962 177.149 1 70.14 ? C19 SQD 202 L 1 HETATM 20 C C20 SQD . . . CA 18 167.383 134.896 176.673 1 70.14 ? C20 SQD 202 L 1 HETATM 21 C C21 SQD . . . CA 18 167.357 134.973 175.155 1 70.14 ? C21 SQD 202 L 1 HETATM 22 C C22 SQD . . . CA 18 168.713 135.407 174.66 1 70.14 ? C22 SQD 202 L 1 HETATM 23 O O48 SQD . . . CA 18 166.677 124.605 184.587 1 70.14 ? O48 SQD 202 L 1 HETATM 24 C C23 SQD . . . CA 18 165.323 124.971 184.386 1 70.14 ? C23 SQD 202 L 1 HETATM 25 O O10 SQD . . . CA 18 164.517 124.807 185.28 1 70.14 ? O10 SQD 202 L 1 HETATM 26 C C24 SQD . . . CA 18 164.945 125.815 183.179 1 70.14 ? C24 SQD 202 L 1 HETATM 27 C C25 SQD . . . CA 18 164.562 127.219 183.632 1 70.14 ? C25 SQD 202 L 1 HETATM 28 C C26 SQD . . . CA 18 163.115 127.513 183.211 1 70.14 ? C26 SQD 202 L 1 HETATM 29 C C27 SQD . . . CA 18 163.012 128.934 182.643 1 70.14 ? C27 SQD 202 L 1 HETATM 30 C C28 SQD . . . CA 18 161.667 129.067 181.923 1 70.14 ? C28 SQD 202 L 1 HETATM 31 C C29 SQD . . . CA 18 161.6 130.345 181.076 1 70.14 ? C29 SQD 202 L 1 HETATM 32 C C30 SQD . . . CA 18 160.584 130.128 179.951 1 70.14 ? C30 SQD 202 L 1 HETATM 33 C C31 SQD . . . CA 18 159.802 131.42 179.686 1 70.14 ? C31 SQD 202 L 1 HETATM 34 C C32 SQD . . . CA 18 159.004 131.279 178.385 1 70.14 ? C32 SQD 202 L 1 HETATM 35 C C33 SQD . . . CA 18 158.876 132.654 177.725 1 70.14 ? C33 SQD 202 L 1 HETATM 36 C C34 SQD . . . CA 18 158.349 132.514 176.295 1 70.14 ? C34 SQD 202 L 1 HETATM 37 C C35 SQD . . . CA 18 158.813 133.693 175.465 1 70.14 ? C35 SQD 202 L 1 HETATM 38 C C36 SQD . . . CA 18 158.165 134.967 175.951 1 70.14 ? C36 SQD 202 L 1 HETATM 39 C C37 SQD . . . CA 18 158.241 136.029 174.884 1 70.14 ? C37 SQD 202 L 1 HETATM 40 C C38 SQD . . . CA 18 157.066 136.959 175.021 1 70.14 ? C38 SQD 202 L 1 HETATM 41 C C1 SQD . . . CA 18 168.61 126.383 189.373 1 70.14 ? C1 SQD 202 L 1 HETATM 42 C C2 SQD . . . CA 18 168.142 127.765 189.746 1 70.14 ? C2 SQD 202 L 1 HETATM 43 O O2 SQD . . . CA 18 168.92 128.695 189.109 1 70.14 ? O2 SQD 202 L 1 HETATM 44 C C3 SQD . . . CA 18 168.303 128 191.222 1 70.14 ? C3 SQD 202 L 1 HETATM 45 O O3 SQD . . . CA 18 167.64 129.159 191.549 1 70.14 ? O3 SQD 202 L 1 HETATM 46 C C4 SQD . . . CA 18 167.814 126.894 192.111 1 70.14 ? C4 SQD 202 L 1 HETATM 47 O O4 SQD . . . CA 18 168.267 127.099 193.393 1 70.14 ? O4 SQD 202 L 1 HETATM 48 C C5 SQD . . . CA 18 168.299 125.572 191.614 1 70.14 ? C5 SQD 202 L 1 HETATM 49 C C6 SQD . . . CA 18 167.572 124.467 192.318 1 70.14 ? C6 SQD 202 L 1 HETATM 50 O O5 SQD . . . CA 18 168.11 125.395 190.234 1 70.14 ? O5 SQD 202 L 1 HETATM 51 S S SQD . . . CA 18 168.285 122.93 191.789 1 70.14 ? S SQD 202 L 1 HETATM 52 O O7 SQD . . . CA 18 167.489 122.29 190.775 1 70.14 ? O7 SQD 202 L 1 HETATM 53 O O8 SQD . . . CA 18 169.662 123.15 191.317 1 70.14 ? O8 SQD 202 L 1 HETATM 54 O O9 SQD . . . CA 18 168.254 121.964 192.853 1 70.14 ? O9 SQD 202 L 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #