data_6RQF # _model_server_result.job_id sH0k2B8ahAwRomiUuzVP5g _model_server_result.datetime_utc '2025-03-06 09:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":301}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 Z N N ? 10 GA N N ? 10 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . NA 10 180.882 174.093 121.11 1 20 ? FE HEC 301 C 1 HETATM 2 C CHA HEC . . . NA 10 183.14 175.477 119.115 1 20 ? CHA HEC 301 C 1 HETATM 3 C CHB HEC . . . NA 10 181.582 176.406 123.6 1 20 ? CHB HEC 301 C 1 HETATM 4 C CHC HEC . . . NA 10 178.092 173.052 122.989 1 20 ? CHC HEC 301 C 1 HETATM 5 C CHD HEC . . . NA 10 180.483 171.421 119.113 1 20 ? CHD HEC 301 C 1 HETATM 6 N NA HEC . . . NA 10 182.135 175.603 121.355 1 20 ? NA HEC 301 C 1 HETATM 7 C C1A HEC . . . NA 10 182.936 176.06 120.34 1 20 ? C1A HEC 301 C 1 HETATM 8 C C2A HEC . . . NA 10 183.557 177.249 120.764 1 20 ? C2A HEC 301 C 1 HETATM 9 C C3A HEC . . . NA 10 183.127 177.517 122.021 1 20 ? C3A HEC 301 C 1 HETATM 10 C C4A HEC . . . NA 10 182.235 176.495 122.39 1 20 ? C4A HEC 301 C 1 HETATM 11 C CMA HEC . . . NA 10 183.531 178.698 122.863 1 20 ? CMA HEC 301 C 1 HETATM 12 C CAA HEC . . . NA 10 184.525 178.078 119.966 1 20 ? CAA HEC 301 C 1 HETATM 13 C CBA HEC . . . NA 10 185.944 177.783 120.451 1 20 ? CBA HEC 301 C 1 HETATM 14 C CGA HEC . . . NA 10 186.929 178.496 119.565 1 20 ? CGA HEC 301 C 1 HETATM 15 O O1A HEC . . . NA 10 187.621 177.847 118.752 1 20 ? O1A HEC 301 C 1 HETATM 16 O O2A HEC . . . NA 10 187.055 179.738 119.639 1 20 ? O2A HEC 301 C 1 HETATM 17 N NB HEC . . . NA 10 180.006 174.629 122.944 1 20 ? NB HEC 301 C 1 HETATM 18 C C1B HEC . . . NA 10 180.466 175.582 123.767 1 20 ? C1B HEC 301 C 1 HETATM 19 C C2B HEC . . . NA 10 179.637 175.674 124.913 1 20 ? C2B HEC 301 C 1 HETATM 20 C C3B HEC . . . NA 10 178.651 174.749 124.77 1 20 ? C3B HEC 301 C 1 HETATM 21 C C4B HEC . . . NA 10 178.907 174.073 123.48 1 20 ? C4B HEC 301 C 1 HETATM 22 C CMB HEC . . . NA 10 179.814 176.62 126.069 1 20 ? CMB HEC 301 C 1 HETATM 23 C CAB HEC . . . NA 10 177.553 174.473 125.709 1 20 ? CAB HEC 301 C 1 HETATM 24 C CBB HEC . . . NA 10 177.58 173.358 126.43 1 20 ? CBB HEC 301 C 1 HETATM 25 N NC HEC . . . NA 10 179.542 172.498 121.1 1 20 ? NC HEC 301 C 1 HETATM 26 C C1C HEC . . . NA 10 178.436 172.3 121.877 1 20 ? C1C HEC 301 C 1 HETATM 27 C C2C HEC . . . NA 10 177.716 171.21 121.37 1 20 ? C2C HEC 301 C 1 HETATM 28 C C3C HEC . . . NA 10 178.398 170.744 120.263 1 20 ? C3C HEC 301 C 1 HETATM 29 C C4C HEC . . . NA 10 179.545 171.565 120.1 1 20 ? C4C HEC 301 C 1 HETATM 30 C CMC HEC . . . NA 10 176.433 170.65 121.929 1 20 ? CMC HEC 301 C 1 HETATM 31 C CAC HEC . . . NA 10 178.005 169.608 119.415 1 20 ? CAC HEC 301 C 1 HETATM 32 C CBC HEC . . . NA 10 178.359 168.377 119.766 1 20 ? CBC HEC 301 C 1 HETATM 33 N ND HEC . . . NA 10 181.637 173.568 119.488 1 20 ? ND HEC 301 C 1 HETATM 34 C C1D HEC . . . NA 10 181.37 172.449 118.8 1 20 ? C1D HEC 301 C 1 HETATM 35 C C2D HEC . . . NA 10 182.177 172.415 117.579 1 20 ? C2D HEC 301 C 1 HETATM 36 C C3D HEC . . . NA 10 182.912 173.536 117.579 1 20 ? C3D HEC 301 C 1 HETATM 37 C C4D HEC . . . NA 10 182.557 174.26 118.801 1 20 ? C4D HEC 301 C 1 HETATM 38 C CMD HEC . . . NA 10 182.181 171.336 116.531 1 20 ? CMD HEC 301 C 1 HETATM 39 C CAD HEC . . . NA 10 183.903 173.96 116.53 1 20 ? CAD HEC 301 C 1 HETATM 40 C CBD HEC . . . NA 10 183.364 175.165 115.761 1 20 ? CBD HEC 301 C 1 HETATM 41 C CGD HEC . . . NA 10 184.349 175.546 114.688 1 20 ? CGD HEC 301 C 1 HETATM 42 O O1D HEC . . . NA 10 185.554 175.234 114.807 1 20 ? O1D HEC 301 C 1 HETATM 43 O O2D HEC . . . NA 10 183.962 176.174 113.679 1 20 ? O2D HEC 301 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #