data_6RQF # _model_server_result.job_id cre_TXQmNcc5wvCzdEwPag _model_server_result.datetime_utc '2025-03-06 09:03:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":302}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 Q N N ? 9 R N N ? 9 EA N N ? 9 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . FA 9 181.441 157.532 180.232 1 33.75 ? CHA HEM 302 A 1 HETATM 2 C CHB HEM . . . FA 9 177.385 158.753 177.986 1 33.75 ? CHB HEM 302 A 1 HETATM 3 C CHC HEM . . . FA 9 179.231 156.87 173.97 1 33.75 ? CHC HEM 302 A 1 HETATM 4 C CHD HEM . . . FA 9 182.571 154.606 176.604 1 33.75 ? CHD HEM 302 A 1 HETATM 5 C C1A HEM . . . FA 9 180.254 158.135 179.95 1 33.75 ? C1A HEM 302 A 1 HETATM 6 C C2A HEM . . . FA 9 179.569 159.102 180.77 1 33.75 ? C2A HEM 302 A 1 HETATM 7 C C3A HEM . . . FA 9 178.449 159.422 180.143 1 33.75 ? C3A HEM 302 A 1 HETATM 8 C C4A HEM . . . FA 9 178.386 158.685 178.912 1 33.75 ? C4A HEM 302 A 1 HETATM 9 C CMA HEM . . . FA 9 177.393 160.414 180.64 1 33.75 ? CMA HEM 302 A 1 HETATM 10 C CAA HEM . . . FA 9 180.015 159.662 182.134 1 33.75 ? CAA HEM 302 A 1 HETATM 11 C CBA HEM . . . FA 9 181.324 160.446 182.107 1 33.75 ? CBA HEM 302 A 1 HETATM 12 C CGA HEM . . . FA 9 181.318 161.501 181.049 1 33.75 ? CGA HEM 302 A 1 HETATM 13 O O1A HEM . . . FA 9 180.255 162.122 180.831 1 33.75 ? O1A HEM 302 A 1 HETATM 14 O O2A HEM . . . FA 9 182.386 161.745 180.441 1 33.75 ? O2A HEM 302 A 1 HETATM 15 C C1B HEM . . . FA 9 177.503 158.297 176.702 1 33.75 ? C1B HEM 302 A 1 HETATM 16 C C2B HEM . . . FA 9 176.46 158.297 175.72 1 33.75 ? C2B HEM 302 A 1 HETATM 17 C C3B HEM . . . FA 9 176.928 157.785 174.594 1 33.75 ? C3B HEM 302 A 1 HETATM 18 C C4B HEM . . . FA 9 178.32 157.431 174.827 1 33.75 ? C4B HEM 302 A 1 HETATM 19 C CMB HEM . . . FA 9 175.03 158.81 175.941 1 33.75 ? CMB HEM 302 A 1 HETATM 20 C CAB HEM . . . FA 9 176.028 157.65 173.347 1 33.75 ? CAB HEM 302 A 1 HETATM 21 C CBB HEM . . . FA 9 176.428 157.22 172.152 1 33.75 ? CBB HEM 302 A 1 HETATM 22 C C1C HEM . . . FA 9 180.307 156.107 174.345 1 33.75 ? C1C HEM 302 A 1 HETATM 23 C C2C HEM . . . FA 9 181.163 155.393 173.435 1 33.75 ? C2C HEM 302 A 1 HETATM 24 C C3C HEM . . . FA 9 182.106 154.761 174.155 1 33.75 ? C3C HEM 302 A 1 HETATM 25 C C4C HEM . . . FA 9 181.843 155.06 175.538 1 33.75 ? C4C HEM 302 A 1 HETATM 26 C CMC HEM . . . FA 9 180.909 155.468 171.916 1 33.75 ? CMC HEM 302 A 1 HETATM 27 C CAC HEM . . . FA 9 183.287 153.845 173.767 1 33.75 ? CAC HEM 302 A 1 HETATM 28 C CBC HEM . . . FA 9 183.581 153.366 172.555 1 33.75 ? CBC HEM 302 A 1 HETATM 29 C C1D HEM . . . FA 9 182.516 155.174 177.85 1 33.75 ? C1D HEM 302 A 1 HETATM 30 C C2D HEM . . . FA 9 183.212 154.735 179.043 1 33.75 ? C2D HEM 302 A 1 HETATM 31 C C3D HEM . . . FA 9 182.887 155.547 180.028 1 33.75 ? C3D HEM 302 A 1 HETATM 32 C C4D HEM . . . FA 9 181.985 156.526 179.502 1 33.75 ? C4D HEM 302 A 1 HETATM 33 C CMD HEM . . . FA 9 184.16 153.533 179.179 1 33.75 ? CMD HEM 302 A 1 HETATM 34 C CAD HEM . . . FA 9 183.376 155.49 181.48 1 33.75 ? CAD HEM 302 A 1 HETATM 35 C CBD HEM . . . FA 9 184.59 156.4 181.578 1 33.75 ? CBD HEM 302 A 1 HETATM 36 C CGD HEM . . . FA 9 184.893 156.745 183.006 1 33.75 ? CGD HEM 302 A 1 HETATM 37 O O1D HEM . . . FA 9 184.063 156.424 183.891 1 33.75 ? O1D HEM 302 A 1 HETATM 38 O O2D HEM . . . FA 9 185.965 157.349 183.251 1 33.75 ? O2D HEM 302 A 1 HETATM 39 N NA HEM . . . FA 9 179.51 157.9 178.818 1 33.75 ? NA HEM 302 A 1 HETATM 40 N NB HEM . . . FA 9 178.629 157.758 176.127 1 33.75 ? NB HEM 302 A 1 HETATM 41 N NC HEM . . . FA 9 180.745 155.883 175.624 1 33.75 ? NC HEM 302 A 1 HETATM 42 N ND HEM . . . FA 9 181.763 156.281 178.169 1 33.75 ? ND HEM 302 A 1 HETATM 43 FE FE HEM . . . FA 9 180.096 156.903 177.169 1 33.75 ? FE HEM 302 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #