data_6RQF # _model_server_result.job_id 7ZtxxbXaW7bkzXRMpy5_tQ _model_server_result.datetime_utc '2025-03-06 09:46:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":304}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 893.489 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 T N N ? 11 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C55 H72 Mg N4 O5 2' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . T 11 132.341 151.257 185.965 1 49.28 ? MG CLA 304 I 1 HETATM 2 C CHA CLA . . . T 11 133.551 150.896 182.747 1 49.28 ? CHA CLA 304 I 1 HETATM 3 C CHB CLA . . . T 11 135.076 149.64 187.166 1 49.28 ? CHB CLA 304 I 1 HETATM 4 C CHC CLA . . . T 11 131.251 151.883 189.151 1 49.28 ? CHC CLA 304 I 1 HETATM 5 C CHD CLA . . . T 11 129.541 152.973 184.68 1 49.28 ? CHD CLA 304 I 1 HETATM 6 N NA CLA . . . T 11 134.007 150.379 185.073 1 49.28 ? NA CLA 304 I 1 HETATM 7 C C1A CLA . . . T 11 134.347 150.35 183.719 1 49.28 ? C1A CLA 304 I 1 HETATM 8 C C2A CLA . . . T 11 135.67 149.624 183.524 1 49.28 ? C2A CLA 304 I 1 HETATM 9 C C3A CLA . . . T 11 136.001 149.06 184.915 1 49.28 ? C3A CLA 304 I 1 HETATM 10 C C4A CLA . . . T 11 134.97 149.743 185.799 1 49.28 ? C4A CLA 304 I 1 HETATM 11 C CMA CLA . . . T 11 135.874 147.566 184.98 1 49.28 ? CMA CLA 304 I 1 HETATM 12 C CAA CLA . . . T 11 136.738 150.643 183.206 1 49.28 ? CAA CLA 304 I 1 HETATM 13 C CBA CLA . . . T 11 138.123 150.074 183.389 1 49.28 ? CBA CLA 304 I 1 HETATM 14 C CGA CLA . . . T 11 138.864 150.253 182.111 1 49.28 ? CGA CLA 304 I 1 HETATM 15 O O1A CLA . . . T 11 139.472 149.415 181.45 1 49.28 ? O1A CLA 304 I 1 HETATM 16 O O2A CLA . . . T 11 138.811 151.536 181.658 1 49.28 ? O2A CLA 304 I 1 HETATM 17 N NB CLA . . . T 11 133.036 150.853 187.802 1 49.28 ? NB CLA 304 I 1 HETATM 18 C C1B CLA . . . T 11 134.182 150.198 188.085 1 49.28 ? C1B CLA 304 I 1 HETATM 19 C C2B CLA . . . T 11 134.375 150.124 189.55 1 49.28 ? C2B CLA 304 I 1 HETATM 20 C C3B CLA . . . T 11 133.302 150.752 190.123 1 49.28 ? C3B CLA 304 I 1 HETATM 21 C C4B CLA . . . T 11 132.427 151.218 189.017 1 49.28 ? C4B CLA 304 I 1 HETATM 22 C CMB CLA . . . T 11 135.526 149.466 190.148 1 49.28 ? CMB CLA 304 I 1 HETATM 23 C CAB CLA . . . T 11 132.979 150.951 191.504 1 49.28 ? CAB CLA 304 I 1 HETATM 24 C CBB CLA . . . T 11 133.064 152.121 192.132 1 49.28 ? CBB CLA 304 I 1 HETATM 25 N NC CLA . . . T 11 130.664 152.202 186.76 1 49.28 ? NC CLA 304 I 1 HETATM 26 C C1C CLA . . . T 11 130.412 152.328 188.093 1 49.28 ? C1C CLA 304 I 1 HETATM 27 C C2C CLA . . . T 11 129.175 153.055 188.303 1 49.28 ? C2C CLA 304 I 1 HETATM 28 C C3C CLA . . . T 11 128.694 153.385 187.041 1 49.28 ? C3C CLA 304 I 1 HETATM 29 C C4C CLA . . . T 11 129.64 152.848 186.075 1 49.28 ? C4C CLA 304 I 1 HETATM 30 C CMC CLA . . . T 11 128.627 153.36 189.621 1 49.28 ? CMC CLA 304 I 1 HETATM 31 C CAC CLA . . . T 11 127.486 154.151 186.714 1 49.28 ? CAC CLA 304 I 1 HETATM 32 C CBC CLA . . . T 11 126.212 153.36 186.817 1 49.28 ? CBC CLA 304 I 1 HETATM 33 N ND CLA . . . T 11 131.583 151.725 184.155 1 49.28 ? ND CLA 304 I 1 HETATM 34 C C1D CLA . . . T 11 130.435 152.457 183.769 1 49.28 ? C1D CLA 304 I 1 HETATM 35 C C2D CLA . . . T 11 130.415 152.568 182.299 1 49.28 ? C2D CLA 304 I 1 HETATM 36 C C3D CLA . . . T 11 131.586 151.99 181.856 1 49.28 ? C3D CLA 304 I 1 HETATM 37 C C4D CLA . . . T 11 132.29 151.499 183.051 1 49.28 ? C4D CLA 304 I 1 HETATM 38 C CMD CLA . . . T 11 129.358 153.213 181.531 1 49.28 ? CMD CLA 304 I 1 HETATM 39 C CAD CLA . . . T 11 132.397 151.642 180.712 1 49.28 ? CAD CLA 304 I 1 HETATM 40 O OBD CLA . . . T 11 132.19 151.795 179.521 1 49.28 ? OBD CLA 304 I 1 HETATM 41 C CBD CLA . . . T 11 133.693 150.993 181.25 1 49.28 ? CBD CLA 304 I 1 HETATM 42 C CGD CLA . . . T 11 133.887 149.649 180.635 1 49.28 ? CGD CLA 304 I 1 HETATM 43 O O1D CLA . . . T 11 133.587 148.561 181.113 1 49.28 ? O1D CLA 304 I 1 HETATM 44 O O2D CLA . . . T 11 134.46 149.674 179.408 1 49.28 ? O2D CLA 304 I 1 HETATM 45 C CED CLA . . . T 11 135.25 148.54 179.055 1 49.28 ? CED CLA 304 I 1 HETATM 46 C C1 CLA . . . T 11 138.683 151.681 180.231 1 49.28 ? C1 CLA 304 I 1 HETATM 47 C C2 CLA . . . T 11 138.028 152.99 180.005 1 49.28 ? C2 CLA 304 I 1 HETATM 48 C C3 CLA . . . T 11 137.384 153.285 178.871 1 49.28 ? C3 CLA 304 I 1 HETATM 49 C C4 CLA . . . T 11 137.266 152.331 177.745 1 49.28 ? C4 CLA 304 I 1 HETATM 50 C C5 CLA . . . T 11 136.745 154.61 178.699 1 49.28 ? C5 CLA 304 I 1 HETATM 51 C C6 CLA . . . T 11 137.377 155.383 177.571 1 49.28 ? C6 CLA 304 I 1 HETATM 52 C C7 CLA . . . T 11 137.3 156.862 177.855 1 49.28 ? C7 CLA 304 I 1 HETATM 53 C C8 CLA . . . T 11 137.615 157.661 176.604 1 49.28 ? C8 CLA 304 I 1 HETATM 54 C C9 CLA . . . T 11 136.559 157.374 175.556 1 49.28 ? C9 CLA 304 I 1 HETATM 55 C C10 CLA . . . T 11 139.017 157.33 176.095 1 49.28 ? C10 CLA 304 I 1 HETATM 56 C C11 CLA . . . T 11 139.309 157.947 174.745 1 49.28 ? C11 CLA 304 I 1 HETATM 57 C C12 CLA . . . T 11 140.773 157.898 174.369 1 49.28 ? C12 CLA 304 I 1 HETATM 58 C C13 CLA . . . T 11 140.976 158.468 172.971 1 49.28 ? C13 CLA 304 I 1 HETATM 59 C C14 CLA . . . T 11 140.263 157.62 171.94 1 49.28 ? C14 CLA 304 I 1 HETATM 60 C C15 CLA . . . T 11 142.456 158.599 172.626 1 49.28 ? C15 CLA 304 I 1 HETATM 61 C C16 CLA . . . T 11 142.702 159.092 171.212 1 49.28 ? C16 CLA 304 I 1 HETATM 62 C C17 CLA . . . T 11 144.179 159.278 170.931 1 49.28 ? C17 CLA 304 I 1 HETATM 63 C C18 CLA . . . T 11 144.852 160.154 171.981 1 49.28 ? C18 CLA 304 I 1 HETATM 64 C C19 CLA . . . T 11 146.28 159.739 172.261 1 49.28 ? C19 CLA 304 I 1 HETATM 65 C C20 CLA . . . T 11 144.799 161.615 171.597 1 49.28 ? C20 CLA 304 I 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #