data_6RQF # _model_server_result.job_id EGP8ZQVtjMumcMvjwy-TWQ _model_server_result.datetime_utc '2025-03-06 09:24:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":306}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.201 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 V N N ? 13 IA N N ? 13 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C53 H80 O2' _chem_comp.formula_weight 749.201 _chem_comp.id PL9 _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PLASTOQUINONE 9' # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PL9 . . . V 13 157.831 156.577 193.38 1 59 ? C2 PL9 306 I 1 HETATM 2 C C3 PL9 . . . V 13 157.418 156.883 192.084 1 59 ? C3 PL9 306 I 1 HETATM 3 C C4 PL9 . . . V 13 158.169 156.374 190.911 1 59 ? C4 PL9 306 I 1 HETATM 4 C C5 PL9 . . . V 13 159.367 155.532 191.13 1 59 ? C5 PL9 306 I 1 HETATM 5 C C6 PL9 . . . V 13 159.764 155.235 192.526 1 59 ? C6 PL9 306 I 1 HETATM 6 C C1 PL9 . . . V 13 158.951 155.789 193.639 1 59 ? C1 PL9 306 I 1 HETATM 7 C C7 PL9 . . . V 13 156.196 157.742 191.862 1 59 ? C7 PL9 306 I 1 HETATM 8 C C8 PL9 . . . V 13 156.553 158.899 190.961 1 59 ? C8 PL9 306 I 1 HETATM 9 C C9 PL9 . . . V 13 155.597 159.602 190.338 1 59 ? C9 PL9 306 I 1 HETATM 10 C C10 PL9 . . . V 13 155.976 160.748 189.447 1 59 ? C10 PL9 306 I 1 HETATM 11 C C11 PL9 . . . V 13 154.141 159.245 190.527 1 59 ? C11 PL9 306 I 1 HETATM 12 C C12 PL9 . . . V 13 153.316 159.933 189.447 1 59 ? C12 PL9 306 I 1 HETATM 13 C C13 PL9 . . . V 13 151.849 159.642 189.657 1 59 ? C13 PL9 306 I 1 HETATM 14 C C14 PL9 . . . V 13 150.95 160.007 188.733 1 59 ? C14 PL9 306 I 1 HETATM 15 C C15 PL9 . . . V 13 149.494 159.716 188.945 1 59 ? C15 PL9 306 I 1 HETATM 16 C C16 PL9 . . . V 13 151.399 160.712 187.477 1 59 ? C16 PL9 306 I 1 HETATM 17 C C17 PL9 . . . V 13 150.287 161.634 186.991 1 59 ? C17 PL9 306 I 1 HETATM 18 C C18 PL9 . . . V 13 149.886 161.247 185.588 1 59 ? C18 PL9 306 I 1 HETATM 19 C C19 PL9 . . . V 13 149.505 162.18 184.706 1 59 ? C19 PL9 306 I 1 HETATM 20 C C20 PL9 . . . V 13 149.476 163.624 185.11 1 59 ? C20 PL9 306 I 1 HETATM 21 C C21 PL9 . . . V 13 149.108 161.774 183.307 1 59 ? C21 PL9 306 I 1 HETATM 22 C C22 PL9 . . . V 13 148.334 162.902 182.637 1 59 ? C22 PL9 306 I 1 HETATM 23 C C23 PL9 . . . V 13 148.983 163.23 181.315 1 59 ? C23 PL9 306 I 1 HETATM 24 C C24 PL9 . . . V 13 148.29 163.836 180.341 1 59 ? C24 PL9 306 I 1 HETATM 25 C C25 PL9 . . . V 13 146.851 164.196 180.556 1 59 ? C25 PL9 306 I 1 HETATM 26 C C26 PL9 . . . V 13 148.961 164.155 179.027 1 59 ? C26 PL9 306 I 1 HETATM 27 C C27 PL9 . . . V 13 149.356 162.855 178.341 1 59 ? C27 PL9 306 I 1 HETATM 28 C C28 PL9 . . . V 13 148.136 161.975 178.214 1 59 ? C28 PL9 306 I 1 HETATM 29 C C29 PL9 . . . V 13 147.951 160.939 179.043 1 59 ? C29 PL9 306 I 1 HETATM 30 C C30 PL9 . . . V 13 148.962 160.641 180.109 1 59 ? C30 PL9 306 I 1 HETATM 31 C C31 PL9 . . . V 13 146.723 160.074 178.897 1 59 ? C31 PL9 306 I 1 HETATM 32 C C32 PL9 . . . V 13 146.051 160.387 177.566 1 59 ? C32 PL9 306 I 1 HETATM 33 C C33 PL9 . . . V 13 144.596 160.718 177.796 1 59 ? C33 PL9 306 I 1 HETATM 34 C C34 PL9 . . . V 13 143.776 160.914 176.755 1 59 ? C34 PL9 306 I 1 HETATM 35 C C35 PL9 . . . V 13 144.307 160.805 175.358 1 59 ? C35 PL9 306 I 1 HETATM 36 C C36 PL9 . . . V 13 142.321 161.244 176.986 1 59 ? C36 PL9 306 I 1 HETATM 37 C C37 PL9 . . . V 13 142.194 162.689 177.453 1 59 ? C37 PL9 306 I 1 HETATM 38 C C38 PL9 . . . V 13 141.564 162.724 178.825 1 59 ? C38 PL9 306 I 1 HETATM 39 C C39 PL9 . . . V 13 140.348 162.202 179.03 1 59 ? C39 PL9 306 I 1 HETATM 40 C C40 PL9 . . . V 13 139.599 161.575 177.893 1 59 ? C40 PL9 306 I 1 HETATM 41 C C41 PL9 . . . V 13 139.731 162.246 180.408 1 59 ? C41 PL9 306 I 1 HETATM 42 C C42 PL9 . . . V 13 140.786 162.655 181.428 1 59 ? C42 PL9 306 I 1 HETATM 43 C C43 PL9 . . . V 13 141.18 161.451 182.251 1 59 ? C43 PL9 306 I 1 HETATM 44 C C44 PL9 . . . V 13 142.463 161.077 182.347 1 59 ? C44 PL9 306 I 1 HETATM 45 C C45 PL9 . . . V 13 142.833 159.879 183.169 1 59 ? C45 PL9 306 I 1 HETATM 46 C C46 PL9 . . . V 13 143.537 161.858 181.629 1 59 ? C46 PL9 306 I 1 HETATM 47 C C47 PL9 . . . V 13 144.563 162.356 182.639 1 59 ? C47 PL9 306 I 1 HETATM 48 C C48 PL9 . . . V 13 144.759 163.844 182.468 1 59 ? C48 PL9 306 I 1 HETATM 49 C C49 PL9 . . . V 13 144.715 164.665 183.525 1 59 ? C49 PL9 306 I 1 HETATM 50 C C50 PL9 . . . V 13 144.467 164.114 184.898 1 59 ? C50 PL9 306 I 1 HETATM 51 C C51 PL9 . . . V 13 144.913 166.14 183.336 1 59 ? C51 PL9 306 I 1 HETATM 52 C C52 PL9 . . . V 13 160.158 154.994 189.967 1 59 ? C52 PL9 306 I 1 HETATM 53 C C53 PL9 . . . V 13 160.973 154.386 192.816 1 59 ? C53 PL9 306 I 1 HETATM 54 O O1 PL9 . . . V 13 157.792 156.653 189.755 1 59 ? O1 PL9 306 I 1 HETATM 55 O O2 PL9 . . . V 13 159.279 155.545 194.819 1 59 ? O2 PL9 306 I 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 55 #