data_6RQO # _model_server_result.job_id OUBx7rOIDKTANE9PZ7jOsw _model_server_result.datetime_utc '2024-10-19 22:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6RQO # _exptl.entry_id 6RQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RQO _cell.length_a 62 _cell.length_b 62 _cell.length_c 110.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31 53.693575 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31 53.693575 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 212 A LYS 216 1_555 B C15 RET . A RET 501 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.466 ? covale ? covale2 A NZ LYS 212 A LYS 216 1_555 B C15 RET . A RET 501 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.422 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 243 n n C1 C6 RET sing 244 n n C1 C16 RET sing 245 n n C1 C17 RET sing 246 n n C2 C3 RET sing 247 n n C2 H21 RET sing 248 n n C2 H22 RET sing 249 n n C3 C4 RET sing 250 n n C3 H31 RET sing 251 n n C3 H32 RET sing 252 n n C4 C5 RET sing 253 n n C4 H41 RET sing 254 n n C4 H42 RET sing 255 n n C5 C6 RET doub 256 n n C5 C18 RET sing 257 n n C6 C7 RET sing 258 n n C7 C8 RET doub 259 e n C7 H7 RET sing 260 n n C8 C9 RET sing 261 n n C8 H8 RET sing 262 n n C9 C10 RET doub 263 e n C9 C19 RET sing 264 n n C10 C11 RET sing 265 n n C10 H10 RET sing 266 n n C11 C12 RET doub 267 e n C11 H11 RET sing 268 n n C12 C13 RET sing 269 n n C12 H12 RET sing 270 n n C13 C14 RET doub 271 e n C13 C20 RET sing 272 n n C14 C15 RET sing 273 n n C14 H14 RET sing 274 n n C15 O1 RET doub 275 n n C15 H15 RET sing 276 n n C16 H161 RET sing 277 n n C16 H162 RET sing 278 n n C16 H163 RET sing 279 n n C17 H171 RET sing 280 n n C17 H172 RET sing 281 n n C17 H173 RET sing 282 n n C18 H181 RET sing 283 n n C18 H182 RET sing 284 n n C18 H183 RET sing 285 n n C19 H191 RET sing 286 n n C19 H192 RET sing 287 n n C19 H193 RET sing 288 n n C20 H201 RET sing 289 n n C20 H202 RET sing 290 n n C20 H203 RET sing 291 n n # _atom_sites.entry_id 6RQO _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0.009312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 501 501 RET RET . C 3 HOH A 1 601 453 HOH HOH . C 3 HOH A 2 602 451 HOH HOH . C 3 HOH A 3 603 404 HOH HOH . C 3 HOH A 4 604 6 HOH HOH . C 3 HOH A 5 605 456 HOH HOH . C 3 HOH A 6 606 403 HOH HOH . C 3 HOH A 7 607 454 HOH HOH . C 3 HOH A 8 608 406 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 15.172 46.298 30.011 0.57 35.33 ? C1 RET 501 A 1 HETATM 2 C C1 RET . B . B 2 14.939 45.645 30.242 0.43 35.23 ? C1 RET 501 A 1 HETATM 3 C C2 RET . A . B 2 14.88 47.299 28.877 0.57 41.96 ? C2 RET 501 A 1 HETATM 4 C C2 RET . B . B 2 14.502 46.347 28.942 0.43 38.56 ? C2 RET 501 A 1 HETATM 5 C C3 RET . A . B 2 15.478 48.674 29.096 0.57 50.75 ? C3 RET 501 A 1 HETATM 6 C C3 RET . B . B 2 14.936 47.795 28.808 0.43 42.88 ? C3 RET 501 A 1 HETATM 7 C C4 RET . A . B 2 14.988 49.246 30.392 0.57 33.94 ? C4 RET 501 A 1 HETATM 8 C C4 RET . B . B 2 14.49 48.582 30.014 0.43 34.16 ? C4 RET 501 A 1 HETATM 9 C C5 RET . A . B 2 15.216 48.311 31.549 0.57 35.69 ? C5 RET 501 A 1 HETATM 10 C C5 RET . B . B 2 14.911 47.944 31.306 0.43 34.92 ? C5 RET 501 A 1 HETATM 11 C C6 RET . A . B 2 15.345 46.991 31.377 0.57 33.57 ? C6 RET 501 A 1 HETATM 12 C C6 RET . B . B 2 15.13 46.625 31.422 0.43 33.47 ? C6 RET 501 A 1 HETATM 13 C C7 RET . A . B 2 15.787 46.139 32.502 0.57 30.35 ? C7 RET 501 A 1 HETATM 14 C C7 RET . B . B 2 15.607 46.041 32.743 0.43 29.71 ? C7 RET 501 A 1 HETATM 15 C C8 RET . A . B 2 15.882 44.809 32.662 0.57 31.57 ? C8 RET 501 A 1 HETATM 16 C C8 RET . B . B 2 15.733 44.771 33.16 0.43 30.92 ? C8 RET 501 A 1 HETATM 17 C C9 RET . A . B 2 16.391 44.163 33.853 0.57 32.23 ? C9 RET 501 A 1 HETATM 18 C C9 RET . B . B 2 16.219 44.325 34.453 0.43 31.72 ? C9 RET 501 A 1 HETATM 19 C C10 RET . A . B 2 16.598 42.824 33.859 0.57 28.78 ? C10 RET 501 A 1 HETATM 20 C C10 RET . B . B 2 16.43 43.001 34.669 0.43 30.81 ? C10 RET 501 A 1 HETATM 21 C C11 RET . A . B 2 17.131 42.054 34.926 0.57 30.22 ? C11 RET 501 A 1 HETATM 22 C C11 RET . B . B 2 16.959 42.376 35.861 0.43 26.78 ? C11 RET 501 A 1 HETATM 23 C C12 RET . A . B 2 17.246 40.723 34.994 0.57 27.93 ? C12 RET 501 A 1 HETATM 24 C C12 RET . B . B 2 17.101 41.047 36.016 0.43 32.44 ? C12 RET 501 A 1 HETATM 25 C C13 RET . A . B 2 17.767 40.017 36.146 0.57 31.51 ? C13 RET 501 A 1 HETATM 26 C C13 RET . B . B 2 17.614 40.357 37.185 0.43 30.28 ? C13 RET 501 A 1 HETATM 27 C C14 RET . A . B 2 17.894 38.665 36.124 0.57 35.41 ? C14 RET 501 A 1 HETATM 28 C C14 RET . B . B 2 17.522 39.006 37.263 0.43 31.6 ? C14 RET 501 A 1 HETATM 29 C C15 RET . A . B 2 17.587 37.77 35.038 0.57 29.42 ? C15 RET 501 A 1 HETATM 30 C C15 RET . B . B 2 16.98 38.137 36.251 0.43 23.6 ? C15 RET 501 A 1 HETATM 31 C C16 RET . A . B 2 16.447 45.541 29.605 0.57 39.01 ? C16 RET 501 A 1 HETATM 32 C C16 RET . B . B 2 16.242 44.882 29.946 0.43 26.39 ? C16 RET 501 A 1 HETATM 33 C C17 RET . A . B 2 13.983 45.326 30.032 0.57 31.32 ? C17 RET 501 A 1 HETATM 34 C C17 RET . B . B 2 13.822 44.634 30.548 0.43 25.28 ? C17 RET 501 A 1 HETATM 35 C C18 RET . A . B 2 15.271 49.012 32.877 0.57 32.93 ? C18 RET 501 A 1 HETATM 36 C C18 RET . B . B 2 15.059 48.926 32.438 0.43 35.91 ? C18 RET 501 A 1 HETATM 37 C C19 RET . A . B 2 16.718 45.037 35.032 0.57 27.11 ? C19 RET 501 A 1 HETATM 38 C C19 RET . B . B 2 16.505 45.372 35.489 0.43 29.48 ? C19 RET 501 A 1 HETATM 39 C C20 RET . A . B 2 18.145 40.848 37.341 0.57 31.55 ? C20 RET 501 A 1 HETATM 40 C C20 RET . B . B 2 18.207 41.193 38.284 0.43 32.53 ? C20 RET 501 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #