data_6RQP # _model_server_result.job_id NQlYhqOBhdcmRm1EljkKlA _model_server_result.datetime_utc '2024-11-27 09:12:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6RQP # _exptl.entry_id 6RQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RQP _cell.length_a 62 _cell.length_b 62 _cell.length_c 110.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31 53.693575 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31 53.693575 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 212 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.42 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 333 n n C10 C9 OLC doub 334 n n C10 C11 OLC sing 335 n n C9 C8 OLC sing 336 n n C17 C16 OLC sing 337 z n C11 C12 OLC sing 338 n n C8 C7 OLC sing 339 n n C24 C22 OLC sing 340 n n C24 O25 OLC sing 341 n n C16 C15 OLC sing 342 n n C12 C13 OLC sing 343 n n C7 C6 OLC sing 344 n n C15 C14 OLC sing 345 n n C13 C14 OLC sing 346 n n C6 C5 OLC sing 347 n n C5 C4 OLC sing 348 n n C4 C3 OLC sing 349 n n C3 C2 OLC sing 350 n n C2 C1 OLC sing 351 n n C21 C22 OLC sing 352 n n C21 O20 OLC sing 353 n n C1 O19 OLC doub 354 n n C1 O20 OLC sing 355 n n C22 O23 OLC sing 356 n n C18 H18 OLC sing 357 n n C18 H18A OLC sing 358 n n C18 H18B OLC sing 359 n n C10 H10 OLC sing 360 n n C9 H9 OLC sing 361 n n C17 H17 OLC sing 362 n n C17 H17A OLC sing 363 n n C11 H11 OLC sing 364 n n C11 H11A OLC sing 365 n n C8 H8 OLC sing 366 n n C8 H8A OLC sing 367 n n C24 H24 OLC sing 368 n n C24 H24A OLC sing 369 n n C16 H16 OLC sing 370 n n C16 H16A OLC sing 371 n n C12 H12 OLC sing 372 n n C12 H12A OLC sing 373 n n C7 H7 OLC sing 374 n n C7 H7A OLC sing 375 n n C15 H15 OLC sing 376 n n C15 H15A OLC sing 377 n n C13 H13 OLC sing 378 n n C13 H13A OLC sing 379 n n C6 H6 OLC sing 380 n n C6 H6A OLC sing 381 n n C14 H14 OLC sing 382 n n C14 H14A OLC sing 383 n n C5 H5 OLC sing 384 n n C5 H5A OLC sing 385 n n C4 H4 OLC sing 386 n n C4 H4A OLC sing 387 n n C3 H3 OLC sing 388 n n C3 H3A OLC sing 389 n n C2 H2 OLC sing 390 n n C2 H2A OLC sing 391 n n C21 H21 OLC sing 392 n n C21 H21A OLC sing 393 n n C22 H22 OLC sing 394 n n O25 HO25 OLC sing 395 n n O23 HO23 OLC sing 396 n n # _atom_sites.entry_id 6RQP _atom_sites.fract_transf_matrix[1][1] 0.016129 _atom_sites.fract_transf_matrix[1][2] 0.009312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 501 501 RET RET . C 3 LI1 A 1 502 606 LI1 LI1 . D 3 LI1 A 1 503 607 LI1 LI1 . E 3 LI1 A 1 504 609 LI1 LI1 . F 3 LI1 A 1 505 610 LI1 LI1 . G 4 OLC A 1 506 2 OLC XXX . H 4 OLC A 1 507 3 OLC XXX . I 4 OLC A 1 508 5 OLC XXX . J 5 HOH A 1 425 425 HOH HOH . J 5 HOH A 2 451 451 HOH HOH . J 5 HOH A 3 402 402 HOH HOH . J 5 HOH A 4 414 414 HOH HOH . J 5 HOH A 5 400 400 HOH HOH . J 5 HOH A 6 401 401 HOH HOH . J 5 HOH A 7 438 438 HOH HOH . J 5 HOH A 8 424 424 HOH HOH . J 5 HOH A 9 406 406 HOH HOH . J 5 HOH A 10 408 408 HOH HOH . J 5 HOH A 11 403 403 HOH HOH . J 5 HOH A 12 407 407 HOH HOH . J 5 HOH A 13 405 405 HOH HOH . J 5 HOH A 14 448 448 HOH HOH . J 5 HOH A 15 433 433 HOH HOH . J 5 HOH A 16 441 441 HOH HOH . J 5 HOH A 17 404 404 HOH HOH . J 5 HOH A 18 444 444 HOH HOH . J 5 HOH A 19 442 442 HOH HOH . J 5 HOH A 20 446 446 HOH HOH . J 5 HOH A 21 443 443 HOH HOH . J 5 HOH A 22 447 447 HOH HOH . J 5 HOH A 23 450 450 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . G 4 20.146 19.767 32.885 1 98.53 ? C18 OLC 506 A 1 HETATM 2 C C10 OLC . . . G 4 12.42 20.698 35.904 1 76.35 ? C10 OLC 506 A 1 HETATM 3 C C9 OLC . . . G 4 11.985 20.565 37.151 1 80.56 ? C9 OLC 506 A 1 HETATM 4 C C17 OLC . . . G 4 19.251 20.08 34.099 1 88.24 ? C17 OLC 506 A 1 HETATM 5 C C11 OLC . . . G 4 12.903 21.929 35.243 1 77.85 ? C11 OLC 506 A 1 HETATM 6 C C8 OLC . . . G 4 11.836 21.66 38.177 1 79.83 ? C8 OLC 506 A 1 HETATM 7 C C24 OLC . . . G 4 10.974 22.564 49.145 1 96.56 ? C24 OLC 506 A 1 HETATM 8 C C16 OLC . . . G 4 18.283 21.206 33.85 1 94.89 ? C16 OLC 506 A 1 HETATM 9 C C12 OLC . . . G 4 14.436 22.073 35.374 1 86.3 ? C12 OLC 506 A 1 HETATM 10 C C7 OLC . . . G 4 11.936 21.082 39.567 1 96.2 ? C7 OLC 506 A 1 HETATM 11 C C15 OLC . . . G 4 17.555 21.683 35.099 1 81.73 ? C15 OLC 506 A 1 HETATM 12 C C13 OLC . . . G 4 15.193 20.822 34.969 1 100.02 ? C13 OLC 506 A 1 HETATM 13 C C6 OLC . . . G 4 11.488 22.011 40.685 1 84.13 ? C6 OLC 506 A 1 HETATM 14 C C14 OLC . . . G 4 16.561 20.708 35.609 1 87.77 ? C14 OLC 506 A 1 HETATM 15 C C5 OLC . . . G 4 12.232 23.307 40.76 1 84.41 ? C5 OLC 506 A 1 HETATM 16 C C4 OLC . . . G 4 11.976 24.076 42.058 1 77.66 ? C4 OLC 506 A 1 HETATM 17 C C3 OLC . . . G 4 12.508 23.379 43.313 1 81.03 ? C3 OLC 506 A 1 HETATM 18 C C2 OLC . . . G 4 12.305 24.227 44.554 1 74.53 ? C2 OLC 506 A 1 HETATM 19 C C21 OLC . . . G 4 13.08 23.386 48.048 1 88.36 ? C21 OLC 506 A 1 HETATM 20 C C1 OLC . . . G 4 13.123 23.778 45.729 1 75.55 ? C1 OLC 506 A 1 HETATM 21 C C22 OLC . . . G 4 12.072 23.607 49.16 1 97.02 ? C22 OLC 506 A 1 HETATM 22 O O19 OLC . . . G 4 14.294 23.542 45.715 1 83.51 ? O19 OLC 506 A 1 HETATM 23 O O25 OLC . . . G 4 10.206 22.604 50.35 1 94.82 ? O25 OLC 506 A 1 HETATM 24 O O23 OLC . . . G 4 12.75 23.59 50.423 1 102.36 ? O23 OLC 506 A 1 HETATM 25 O O20 OLC . . . G 4 12.379 23.706 46.829 1 82.77 ? O20 OLC 506 A 1 HETATM 26 H H18 OLC . . . G 4 20.758 20.619 32.592 1 118.26 ? H18 OLC 506 A 1 HETATM 27 H H18A OLC . . . G 4 20.833 18.945 33.079 1 118.26 ? H18A OLC 506 A 1 HETATM 28 H H18B OLC . . . G 4 19.567 19.486 32.007 1 118.26 ? H18B OLC 506 A 1 HETATM 29 H H10 OLC . . . G 4 12.437 19.817 35.264 1 91.65 ? H10 OLC 506 A 1 HETATM 30 H H9 OLC . . . G 4 11.698 19.575 37.501 1 96.69 ? H9 OLC 506 A 1 HETATM 31 H H17 OLC . . . G 4 18.705 19.185 34.391 1 105.91 ? H17 OLC 506 A 1 HETATM 32 H H17A OLC . . . G 4 19.873 20.317 34.961 1 105.91 ? H17A OLC 506 A 1 HETATM 33 H H11 OLC . . . G 4 12.394 22.792 35.671 1 93.44 ? H11 OLC 506 A 1 HETATM 34 H H11A OLC . . . G 4 12.603 21.918 34.196 1 93.44 ? H11A OLC 506 A 1 HETATM 35 H H8 OLC . . . G 4 10.886 22.173 38.039 1 95.82 ? H8 OLC 506 A 1 HETATM 36 H H8A OLC . . . G 4 12.596 22.424 38.02 1 95.82 ? H8A OLC 506 A 1 HETATM 37 H H24 OLC . . . G 4 11.415 21.578 49.009 1 115.9 ? H24 OLC 506 A 1 HETATM 38 H H24A OLC . . . G 4 10.333 22.728 48.281 1 115.9 ? H24A OLC 506 A 1 HETATM 39 H H16 OLC . . . G 4 17.553 20.904 33.1 1 113.89 ? H16 OLC 506 A 1 HETATM 40 H H16A OLC . . . G 4 18.804 22.046 33.393 1 113.89 ? H16A OLC 506 A 1 HETATM 41 H H12 OLC . . . G 4 14.773 22.919 34.777 1 103.58 ? H12 OLC 506 A 1 HETATM 42 H H12A OLC . . . G 4 14.688 22.342 36.399 1 103.58 ? H12A OLC 506 A 1 HETATM 43 H H7 OLC . . . G 4 12.964 20.77 39.747 1 115.47 ? H7 OLC 506 A 1 HETATM 44 H H7A OLC . . . G 4 11.357 20.161 39.609 1 115.47 ? H7A OLC 506 A 1 HETATM 45 H H15 OLC . . . G 4 18.279 21.91 35.88 1 98.11 ? H15 OLC 506 A 1 HETATM 46 H H15A OLC . . . G 4 17.065 22.634 34.896 1 98.11 ? H15A OLC 506 A 1 HETATM 47 H H13 OLC . . . G 4 15.292 20.79 33.885 1 120.05 ? H13 OLC 506 A 1 HETATM 48 H H13A OLC . . . G 4 14.601 19.941 35.212 1 120.05 ? H13A OLC 506 A 1 HETATM 49 H H6 OLC . . . G 4 10.424 22.217 40.581 1 100.98 ? H6 OLC 506 A 1 HETATM 50 H H6A OLC . . . G 4 11.574 21.497 41.641 1 100.98 ? H6A OLC 506 A 1 HETATM 51 H H14 OLC . . . G 4 16.463 20.815 36.688 1 105.34 ? H14 OLC 506 A 1 HETATM 52 H H14A OLC . . . G 4 16.938 19.695 35.472 1 105.34 ? H14A OLC 506 A 1 HETATM 53 H H5 OLC . . . G 4 11.968 23.934 39.909 1 101.32 ? H5 OLC 506 A 1 HETATM 54 H H5A OLC . . . G 4 13.3 23.128 40.648 1 101.32 ? H5A OLC 506 A 1 HETATM 55 H H4 OLC . . . G 4 12.414 25.07 41.981 1 93.21 ? H4 OLC 506 A 1 HETATM 56 H H4A OLC . . . G 4 10.907 24.253 42.167 1 93.21 ? H4A OLC 506 A 1 HETATM 57 H H3 OLC . . . G 4 13.565 23.143 43.202 1 97.26 ? H3 OLC 506 A 1 HETATM 58 H H3A OLC . . . G 4 12.025 22.413 43.449 1 97.26 ? H3A OLC 506 A 1 HETATM 59 H H2 OLC . . . G 4 12.543 25.268 44.342 1 89.46 ? H2 OLC 506 A 1 HETATM 60 H H2A OLC . . . G 4 11.255 24.229 44.841 1 89.46 ? H2A OLC 506 A 1 HETATM 61 H H21 OLC . . . G 4 13.956 24.028 48.135 1 106.06 ? H21 OLC 506 A 1 HETATM 62 H H21A OLC . . . G 4 13.438 22.359 47.995 1 106.06 ? H21A OLC 506 A 1 HETATM 63 H H22 OLC . . . G 4 11.622 24.589 49.028 1 116.45 ? H22 OLC 506 A 1 HETATM 64 H HO25 OLC . . . G 4 9.404 22.042 50.184 1 113.81 ? HO25 OLC 506 A 1 HETATM 65 H HO23 OLC . . . G 4 12.708 24.518 50.773 1 122.85 ? HO23 OLC 506 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #