data_6RR2 # _model_server_result.job_id s_rFPnLbn9KbV8ZPDzt2wQ _model_server_result.datetime_utc '2024-11-13 00:16:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6RR2 # _exptl.entry_id 6RR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RR2 _cell.length_a 62.769 _cell.length_b 75.474 _cell.length_c 118.358 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 A,B,C,D,E 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.769 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.769 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 288 n n CS HCS1 MTA sing 289 n n CS HCS2 MTA sing 290 n n CS HCS3 MTA sing 291 n n S5' C5' MTA sing 292 n n C5' C4' MTA sing 293 n n C5' "H5'1" MTA sing 294 n n C5' "H5'2" MTA sing 295 n n C4' O4' MTA sing 296 n n C4' C3' MTA sing 297 n n C4' H4' MTA sing 298 n n O4' C1' MTA sing 299 n n C2' O2' MTA sing 300 n n C2' C3' MTA sing 301 n n C2' C1' MTA sing 302 n n C2' H2' MTA sing 303 n n O2' HO2' MTA sing 304 n n C3' O3' MTA sing 305 n n C3' H3' MTA sing 306 n n O3' H3T MTA sing 307 n n C1' N9 MTA sing 308 n n C1' H1' MTA sing 309 n n N9 C8 MTA sing 310 n y N9 C4 MTA sing 311 n y C8 N7 MTA doub 312 n y C8 H8 MTA sing 313 n n N7 C5 MTA sing 314 n y C5 C6 MTA sing 315 n y C5 C4 MTA doub 316 n y C6 N6 MTA sing 317 n n C6 N1 MTA doub 318 n y N6 H61 MTA sing 319 n n N6 H62 MTA sing 320 n n N1 C2 MTA sing 321 n y C2 N3 MTA doub 322 n y C2 H2 MTA sing 323 n n N3 C4 MTA sing 324 n y # _atom_sites.entry_id 6RR2 _atom_sites.fract_transf_matrix[1][1] 0.015931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 KF5 A 1 302 1 KF5 9TA . D 4 MTA A 1 303 1 MTA MTA . E 5 HOH A 1 401 5 HOH HOH . E 5 HOH A 2 402 69 HOH HOH . E 5 HOH A 3 403 65 HOH HOH . E 5 HOH A 4 404 22 HOH HOH . E 5 HOH A 5 405 75 HOH HOH . E 5 HOH A 6 406 79 HOH HOH . E 5 HOH A 7 407 67 HOH HOH . E 5 HOH A 8 408 4 HOH HOH . E 5 HOH A 9 409 33 HOH HOH . E 5 HOH A 10 410 17 HOH HOH . E 5 HOH A 11 411 54 HOH HOH . E 5 HOH A 12 412 23 HOH HOH . E 5 HOH A 13 413 20 HOH HOH . E 5 HOH A 14 414 60 HOH HOH . E 5 HOH A 15 415 7 HOH HOH . E 5 HOH A 16 416 40 HOH HOH . E 5 HOH A 17 417 8 HOH HOH . E 5 HOH A 18 418 16 HOH HOH . E 5 HOH A 19 419 1 HOH HOH . E 5 HOH A 20 420 37 HOH HOH . E 5 HOH A 21 421 45 HOH HOH . E 5 HOH A 22 422 43 HOH HOH . E 5 HOH A 23 423 77 HOH HOH . E 5 HOH A 24 424 9 HOH HOH . E 5 HOH A 25 425 46 HOH HOH . E 5 HOH A 26 426 13 HOH HOH . E 5 HOH A 27 427 6 HOH HOH . E 5 HOH A 28 428 25 HOH HOH . E 5 HOH A 29 429 72 HOH HOH . E 5 HOH A 30 430 49 HOH HOH . E 5 HOH A 31 431 24 HOH HOH . E 5 HOH A 32 432 30 HOH HOH . E 5 HOH A 33 433 14 HOH HOH . E 5 HOH A 34 434 2 HOH HOH . E 5 HOH A 35 435 74 HOH HOH . E 5 HOH A 36 436 10 HOH HOH . E 5 HOH A 37 437 32 HOH HOH . E 5 HOH A 38 438 18 HOH HOH . E 5 HOH A 39 439 12 HOH HOH . E 5 HOH A 40 440 62 HOH HOH . E 5 HOH A 41 441 15 HOH HOH . E 5 HOH A 42 442 3 HOH HOH . E 5 HOH A 43 443 61 HOH HOH . E 5 HOH A 44 444 44 HOH HOH . E 5 HOH A 45 445 71 HOH HOH . E 5 HOH A 46 446 19 HOH HOH . E 5 HOH A 47 447 31 HOH HOH . E 5 HOH A 48 448 11 HOH HOH . E 5 HOH A 49 449 53 HOH HOH . E 5 HOH A 50 450 81 HOH HOH . E 5 HOH A 51 451 42 HOH HOH . E 5 HOH A 52 452 36 HOH HOH . E 5 HOH A 53 453 26 HOH HOH . E 5 HOH A 54 454 56 HOH HOH . E 5 HOH A 55 455 21 HOH HOH . E 5 HOH A 56 456 55 HOH HOH . E 5 HOH A 57 457 34 HOH HOH . E 5 HOH A 58 458 82 HOH HOH . E 5 HOH A 59 459 35 HOH HOH . E 5 HOH A 60 460 68 HOH HOH . E 5 HOH A 61 461 50 HOH HOH . E 5 HOH A 62 462 76 HOH HOH . E 5 HOH A 63 463 39 HOH HOH . E 5 HOH A 64 464 73 HOH HOH . E 5 HOH A 65 465 29 HOH HOH . E 5 HOH A 66 466 51 HOH HOH . E 5 HOH A 67 467 58 HOH HOH . E 5 HOH A 68 468 78 HOH HOH . E 5 HOH A 69 469 47 HOH HOH . E 5 HOH A 70 470 80 HOH HOH . E 5 HOH A 71 471 52 HOH HOH . E 5 HOH A 72 472 41 HOH HOH . E 5 HOH A 73 473 59 HOH HOH . E 5 HOH A 74 474 38 HOH HOH . E 5 HOH A 75 475 48 HOH HOH . E 5 HOH A 76 476 70 HOH HOH . E 5 HOH A 77 477 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . D 4 13.902 8.273 12.735 1 58.87 ? CS MTA 303 A 1 HETATM 2 S S5' MTA . . . D 4 14.055 10.021 12.384 1 59.23 ? S5' MTA 303 A 1 HETATM 3 C C5' MTA . . . D 4 13.97 10.024 10.581 1 59.31 ? C5' MTA 303 A 1 HETATM 4 C C4' MTA . . . D 4 15.361 9.963 9.981 1 58.9 ? C4' MTA 303 A 1 HETATM 5 O O4' MTA . . . D 4 15.887 8.624 10.035 1 59.33 ? O4' MTA 303 A 1 HETATM 6 C C2' MTA . . . D 4 16.6 9.595 7.975 1 57.83 ? C2' MTA 303 A 1 HETATM 7 O O2' MTA . . . D 4 17.688 10.508 7.902 1 57.32 ? O2' MTA 303 A 1 HETATM 8 C C3' MTA . . . D 4 15.319 10.268 8.491 1 57.26 ? C3' MTA 303 A 1 HETATM 9 O O3' MTA . . . D 4 15.323 11.669 8.242 1 55.19 ? O3' MTA 303 A 1 HETATM 10 C C1' MTA . . . D 4 16.879 8.51 9.032 1 59.32 ? C1' MTA 303 A 1 HETATM 11 N N9 MTA . . . D 4 16.861 7.152 8.496 1 60.42 ? N9 MTA 303 A 1 HETATM 12 C C8 MTA . . . D 4 15.819 6.512 7.881 1 60.67 ? C8 MTA 303 A 1 HETATM 13 N N7 MTA . . . D 4 16.121 5.319 7.421 1 60.81 ? N7 MTA 303 A 1 HETATM 14 C C5 MTA . . . D 4 17.453 5.165 7.764 1 60.15 ? C5 MTA 303 A 1 HETATM 15 C C6 MTA . . . D 4 18.378 4.123 7.544 1 58.97 ? C6 MTA 303 A 1 HETATM 16 N N6 MTA . . . D 4 18.081 2.988 6.901 1 57.91 ? N6 MTA 303 A 1 HETATM 17 N N1 MTA . . . D 4 19.636 4.292 8.002 1 58.9 ? N1 MTA 303 A 1 HETATM 18 C C2 MTA . . . D 4 19.942 5.426 8.639 1 59.44 ? C2 MTA 303 A 1 HETATM 19 N N3 MTA . . . D 4 19.159 6.474 8.905 1 59.65 ? N3 MTA 303 A 1 HETATM 20 C C4 MTA . . . D 4 17.925 6.282 8.436 1 60.31 ? C4 MTA 303 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #