data_6RSA # _model_server_result.job_id UY4WIsVi3PHfzx-Ky3o95A _model_server_result.datetime_utc '2025-09-06 07:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":125}' # _entry.id 6RSA # loop_ _exptl.entry_id _exptl.method 6RSA 'NEUTRON DIFFRACTION' 6RSA 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 343.141 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-2',3'-VANADATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.4 _cell.angle_gamma 90 _cell.entry_id 6RSA _cell.length_a 30.3 _cell.length_b 38.35 _cell.length_c 53.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C9 H12 N2 O9 V' _chem_comp.formula_weight 343.141 _chem_comp.id UVC _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-2',3'-VANADATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UVC sing 330 n n N1 C6 UVC sing 331 n n N1 C1' UVC sing 332 n n C2 N3 UVC sing 333 n n C2 O2 UVC doub 334 n n N3 C4 UVC sing 335 n n N3 HN3 UVC sing 336 n n C4 C5 UVC sing 337 n n C4 O4 UVC doub 338 n n C5 C6 UVC doub 339 n n C5 H5 UVC sing 340 n n C6 H6 UVC sing 341 n n C1' C2' UVC sing 342 n n C1' O4' UVC sing 343 n n C1' H1' UVC sing 344 n n C2' O2' UVC sing 345 n n C2' C3' UVC sing 346 n n C2' H2' UVC sing 347 n n O2' V UVC sing 348 n n C3' C4' UVC sing 349 n n C3' O3' UVC sing 350 n n C3' H3' UVC sing 351 n n C4' O4' UVC sing 352 n n C4' C5' UVC sing 353 n n C4' H4' UVC sing 354 n n O3' V UVC sing 355 n n C5' O5' UVC sing 356 n n C5' "H5'1" UVC sing 357 n n C5' "H5'2" UVC sing 358 n n O5' HO5' UVC sing 359 n n V O1V UVC sing 360 n n V O2V UVC doub 361 n n V O3V UVC sing 362 n n O1V HOV1 UVC sing 363 n n O3V HOV3 UVC sing 364 n n # _atom_sites.entry_id 6RSA _atom_sites.fract_transf_matrix[1][1] 0.033003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009713 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UVC A 1 125 1 UVC UVC . C 3 DOD A 1 128 128 DOD DOD . C 3 DOD A 2 129 129 DOD DOD . C 3 DOD A 3 133 133 DOD DOD . C 3 DOD A 4 135 135 DOD DOD . C 3 DOD A 5 138 138 DOD DOD . C 3 DOD A 6 140 140 DOD DOD . C 3 DOD A 7 142 142 DOD DOD . C 3 DOD A 8 145 145 DOD DOD . C 3 DOD A 9 147 147 DOD DOD . C 3 DOD A 10 151 151 DOD DOD . C 3 DOD A 11 154 154 DOD DOD . C 3 DOD A 12 155 155 DOD DOD . C 3 DOD A 13 156 156 DOD DOD . C 3 DOD A 14 157 157 DOD DOD . C 3 DOD A 15 158 158 DOD DOD . C 3 DOD A 16 163 163 DOD DOD . C 3 DOD A 17 164 164 DOD DOD . C 3 DOD A 18 165 165 DOD DOD . C 3 DOD A 19 166 166 DOD DOD . C 3 DOD A 20 167 167 DOD DOD . C 3 DOD A 21 168 168 DOD DOD . C 3 DOD A 22 169 169 DOD DOD . C 3 DOD A 23 171 171 DOD DOD . C 3 DOD A 24 172 172 DOD DOD . C 3 DOD A 25 175 175 DOD DOD . C 3 DOD A 26 177 177 DOD DOD . C 3 DOD A 27 178 178 DOD DOD . C 3 DOD A 28 179 179 DOD DOD . C 3 DOD A 29 180 180 DOD DOD . C 3 DOD A 30 181 181 DOD DOD . C 3 DOD A 31 182 182 DOD DOD . C 3 DOD A 32 183 183 DOD DOD . C 3 DOD A 33 184 184 DOD DOD . C 3 DOD A 34 187 187 DOD DOD . C 3 DOD A 35 188 188 DOD DOD . C 3 DOD A 36 189 189 DOD DOD . C 3 DOD A 37 190 190 DOD DOD . C 3 DOD A 38 192 192 DOD DOD . C 3 DOD A 39 194 194 DOD DOD . C 3 DOD A 40 195 195 DOD DOD . C 3 DOD A 41 196 196 DOD DOD . C 3 DOD A 42 197 197 DOD DOD . C 3 DOD A 43 198 198 DOD DOD . C 3 DOD A 44 199 199 DOD DOD . C 3 DOD A 45 200 200 DOD DOD . C 3 DOD A 46 201 201 DOD DOD . C 3 DOD A 47 203 203 DOD DOD . C 3 DOD A 48 205 205 DOD DOD . C 3 DOD A 49 206 206 DOD DOD . C 3 DOD A 50 209 209 DOD DOD . C 3 DOD A 51 210 210 DOD DOD . C 3 DOD A 52 211 211 DOD DOD . C 3 DOD A 53 212 212 DOD DOD . C 3 DOD A 54 213 213 DOD DOD . C 3 DOD A 55 214 214 DOD DOD . C 3 DOD A 56 216 216 DOD DOD . C 3 DOD A 57 217 217 DOD DOD . C 3 DOD A 58 218 218 DOD DOD . C 3 DOD A 59 220 220 DOD DOD . C 3 DOD A 60 221 221 DOD DOD . C 3 DOD A 61 222 222 DOD DOD . C 3 DOD A 62 223 223 DOD DOD . C 3 DOD A 63 228 228 DOD DOD . C 3 DOD A 64 233 233 DOD DOD . C 3 DOD A 65 235 235 DOD DOD . C 3 DOD A 66 238 238 DOD DOD . C 3 DOD A 67 239 239 DOD DOD . C 3 DOD A 68 242 242 DOD DOD . C 3 DOD A 69 244 244 DOD DOD . C 3 DOD A 70 246 246 DOD DOD . C 3 DOD A 71 248 248 DOD DOD . C 3 DOD A 72 249 249 DOD DOD . C 3 DOD A 73 251 251 DOD DOD . C 3 DOD A 74 253 253 DOD DOD . C 3 DOD A 75 254 254 DOD DOD . C 3 DOD A 76 258 258 DOD DOD . C 3 DOD A 77 270 270 DOD DOD . C 3 DOD A 78 271 271 DOD DOD . C 3 DOD A 79 275 275 DOD DOD . C 3 DOD A 80 276 276 DOD DOD . C 3 DOD A 81 278 278 DOD DOD . C 3 DOD A 82 287 287 DOD DOD . C 3 DOD A 83 294 294 DOD DOD . C 3 DOD A 84 296 296 DOD DOD . C 3 DOD A 85 297 297 DOD DOD . C 3 DOD A 86 301 301 DOD DOD . C 3 DOD A 87 302 302 DOD DOD . C 3 DOD A 88 303 303 DOD DOD . C 3 DOD A 89 320 320 DOD DOD . C 3 DOD A 90 321 321 DOD DOD . C 3 DOD A 91 322 322 DOD DOD . C 3 DOD A 92 323 323 DOD DOD . C 3 DOD A 93 324 324 DOD DOD . C 3 DOD A 94 325 325 DOD DOD . C 3 DOD A 95 326 326 DOD DOD . C 3 DOD A 96 327 327 DOD DOD . C 3 DOD A 97 328 328 DOD DOD . C 3 DOD A 98 329 329 DOD DOD . C 3 DOD A 99 330 330 DOD DOD . C 3 DOD A 100 332 332 DOD DOD . C 3 DOD A 101 333 333 DOD DOD . C 3 DOD A 102 337 337 DOD DOD . C 3 DOD A 103 338 338 DOD DOD . C 3 DOD A 104 339 339 DOD DOD . C 3 DOD A 105 341 341 DOD DOD . C 3 DOD A 106 342 342 DOD DOD . C 3 DOD A 107 343 343 DOD DOD . C 3 DOD A 108 344 344 DOD DOD . C 3 DOD A 109 345 345 DOD DOD . C 3 DOD A 110 347 347 DOD DOD . C 3 DOD A 111 348 348 DOD DOD . C 3 DOD A 112 349 349 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UVC . . . B 2 31.969 13.661 9.352 1 15.1 ? N1 UVC 125 A 1 HETATM 2 C C2 UVC . . . B 2 31.656 13.999 10.612 1 13.91 ? C2 UVC 125 A 1 HETATM 3 N N3 UVC . . . B 2 32.67 13.732 11.468 1 14.76 ? N3 UVC 125 A 1 HETATM 4 C C4 UVC . . . B 2 33.945 13.283 11.176 1 15.07 ? C4 UVC 125 A 1 HETATM 5 C C5 UVC . . . B 2 34.175 13.003 9.795 1 14.52 ? C5 UVC 125 A 1 HETATM 6 C C6 UVC . . . B 2 33.174 13.182 8.937 1 13.84 ? C6 UVC 125 A 1 HETATM 7 O O2 UVC . . . B 2 30.578 14.391 10.997 1 13.09 ? O2 UVC 125 A 1 HETATM 8 O O4 UVC . . . B 2 34.772 13.201 12.075 1 17.08 ? O4 UVC 125 A 1 HETATM 9 C C1' UVC . . . B 2 30.899 13.89 8.308 1 16.41 ? C1' UVC 125 A 1 HETATM 10 C C2' UVC . . . B 2 31.041 15.368 7.854 1 17.77 ? C2' UVC 125 A 1 HETATM 11 O O2' UVC . . . B 2 29.722 15.834 7.639 1 19.26 ? O2' UVC 125 A 1 HETATM 12 C C3' UVC . . . B 2 31.862 15.373 6.59 1 18.53 ? C3' UVC 125 A 1 HETATM 13 C C4' UVC . . . B 2 31.472 13.945 6.112 1 18.91 ? C4' UVC 125 A 1 HETATM 14 O O3' UVC . . . B 2 31.488 16.498 5.719 1 20 ? O3' UVC 125 A 1 HETATM 15 O O4' UVC . . . B 2 31.432 13.033 7.258 1 17.18 ? O4' UVC 125 A 1 HETATM 16 C C5' UVC . . . B 2 32.332 13.231 5.108 1 19.28 ? C5' UVC 125 A 1 HETATM 17 O O5' UVC . . . B 2 33.514 12.846 5.813 1 20.91 ? O5' UVC 125 A 1 HETATM 18 V V UVC . . . B 2 29.854 17.21 6.366 1 19.32 ? V UVC 125 A 1 HETATM 19 O O1V UVC . . . B 2 28.228 17.098 5.741 1 18.3 ? O1V UVC 125 A 1 HETATM 20 O O2V UVC . . . B 2 30.159 18.258 4.797 1 20.33 ? O2V UVC 125 A 1 HETATM 21 O O3V UVC . . . B 2 29.927 18.625 7.388 1 19 ? O3V UVC 125 A 1 HETATM 22 D DN3 UVC . . . B 2 32.483 13.948 12.465 1 14.54 ? DN3 UVC 125 A 1 HETATM 23 H H5 UVC . . . B 2 35.098 12.662 9.551 1 14.6 ? H5 UVC 125 A 1 HETATM 24 H H6 UVC . . . B 2 33.322 13.009 7.94 1 14.29 ? H6 UVC 125 A 1 HETATM 25 H H1' UVC . . . B 2 29.987 13.681 8.639 1 16.34 ? H1' UVC 125 A 1 HETATM 26 H H2' UVC . . . B 2 31.548 16.016 8.486 1 17.96 ? H2' UVC 125 A 1 HETATM 27 H H3' UVC . . . B 2 32.848 15.496 6.319 1 19.02 ? H3' UVC 125 A 1 HETATM 28 H H4' UVC . . . B 2 30.529 14.148 5.817 1 18.35 ? H4' UVC 125 A 1 HETATM 29 H "H5'1" UVC . . . B 2 31.942 12.471 4.642 1 19.45 ? "H5'1" UVC 125 A 1 HETATM 30 H "H5'2" UVC . . . B 2 32.688 13.883 4.421 1 19.31 ? "H5'2" UVC 125 A 1 HETATM 31 D DO5' UVC . . . B 2 34.322 13.296 5.377 1 21.05 ? DO5' UVC 125 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #