data_6RSJ
#
_model_server_result.job_id            DbnePD7kqwlW56k-53250A 
_model_server_result.datetime_utc      '2024-11-13 08:25:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rsj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    6RSJ 
#
_exptl.entry_id    6RSJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RSJ 
_cell.length_a            101.452 
_cell.length_b            101.452 
_cell.length_c            85.612 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RSJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? 
covale ? covale2 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 B FE HEC . A HEC 201 1_555 O O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 543 n n 
N1 HN11 SPM sing 544 n n 
N1 HN12 SPM sing 545 n n 
C2 C3 SPM sing 546 n n 
C2 H21 SPM sing 547 n n 
C2 H22 SPM sing 548 n n 
C3 C4 SPM sing 549 n n 
C3 H31 SPM sing 550 n n 
C3 H32 SPM sing 551 n n 
C4 N5 SPM sing 552 n n 
C4 H41 SPM sing 553 n n 
C4 H42 SPM sing 554 n n 
N5 C6 SPM sing 555 n n 
N5 HN5 SPM sing 556 n n 
C6 C7 SPM sing 557 n n 
C6 H61 SPM sing 558 n n 
C6 H62 SPM sing 559 n n 
C7 C8 SPM sing 560 n n 
C7 H71 SPM sing 561 n n 
C7 H72 SPM sing 562 n n 
C8 C9 SPM sing 563 n n 
C8 H81 SPM sing 564 n n 
C8 H82 SPM sing 565 n n 
C9 N10 SPM sing 566 n n 
C9 H91 SPM sing 567 n n 
C9 H92 SPM sing 568 n n 
N10 C11 SPM sing 569 n n 
N10 HN0 SPM sing 570 n n 
C11 C12 SPM sing 571 n n 
C11 H111 SPM sing 572 n n 
C11 H112 SPM sing 573 n n 
C12 C13 SPM sing 574 n n 
C12 H121 SPM sing 575 n n 
C12 H122 SPM sing 576 n n 
C13 N14 SPM sing 577 n n 
C13 H131 SPM sing 578 n n 
C13 H132 SPM sing 579 n n 
N14 HN41 SPM sing 580 n n 
N14 HN42 SPM sing 581 n n 
#
_atom_sites.entry_id                     6RSJ 
_atom_sites.fract_transf_matrix[1][1]    0.009857 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 201 201 HEC HEC . 
C 3 EVB A 1 202 202 EVB EVB . 
D 3 EVB A 1 203 203 EVB EVB . 
E 3 EVB A 1 204 204 EVB EVB . 
F 4 SPM A 1 205 5 SPM SPM . 
G 4 SPM A 1 206 6 SPM SPM . 
H 5 SO4 A 1 207 1 SO4 SO4 . 
I 5 SO4 A 1 208 2 SO4 SO4 . 
J 6 GOL A 1 209 1 GOL GOL . 
K 6 GOL A 1 210 3 GOL GOL . 
L 6 GOL A 1 211 4 GOL GOL . 
M 6 GOL A 1 212 5 GOL GOL . 
N 6 GOL A 1 213 6 GOL GOL . 
O 7 HOH A 1 301 103 HOH HOH . 
O 7 HOH A 2 302 9 HOH HOH . 
O 7 HOH A 3 303 4 HOH HOH . 
O 7 HOH A 4 304 14 HOH HOH . 
O 7 HOH A 5 305 46 HOH HOH . 
O 7 HOH A 6 306 46 HOH HOH . 
O 7 HOH A 7 307 89 HOH HOH . 
O 7 HOH A 8 308 29 HOH HOH . 
O 7 HOH A 9 309 8 HOH HOH . 
O 7 HOH A 10 310 16 HOH HOH . 
O 7 HOH A 11 311 11 HOH HOH . 
O 7 HOH A 12 312 41 HOH HOH . 
O 7 HOH A 13 313 48 HOH HOH . 
O 7 HOH A 14 314 5 HOH HOH . 
O 7 HOH A 15 315 7 HOH HOH . 
O 7 HOH A 16 316 33 HOH HOH . 
O 7 HOH A 17 317 2 HOH HOH . 
O 7 HOH A 18 318 3 HOH HOH . 
O 7 HOH A 19 319 34 HOH HOH . 
O 7 HOH A 20 320 49 HOH HOH . 
O 7 HOH A 21 321 35 HOH HOH . 
O 7 HOH A 22 322 68 HOH HOH . 
O 7 HOH A 23 323 27 HOH HOH . 
O 7 HOH A 24 324 24 HOH HOH . 
O 7 HOH A 25 325 61 HOH HOH . 
O 7 HOH A 26 326 30 HOH HOH . 
O 7 HOH A 27 327 35 HOH HOH . 
O 7 HOH A 28 328 40 HOH HOH . 
O 7 HOH A 29 329 30 HOH HOH . 
O 7 HOH A 30 330 102 HOH HOH . 
O 7 HOH A 31 331 83 HOH HOH . 
O 7 HOH A 32 332 42 HOH HOH . 
O 7 HOH A 33 333 10 HOH HOH . 
O 7 HOH A 34 334 31 HOH HOH . 
O 7 HOH A 35 335 26 HOH HOH . 
O 7 HOH A 36 336 32 HOH HOH . 
O 7 HOH A 37 337 74 HOH HOH . 
O 7 HOH A 38 338 22 HOH HOH . 
O 7 HOH A 39 339 78 HOH HOH . 
O 7 HOH A 40 340 12 HOH HOH . 
O 7 HOH A 41 341 21 HOH HOH . 
O 7 HOH A 42 342 71 HOH HOH . 
O 7 HOH A 43 343 16 HOH HOH . 
O 7 HOH A 44 344 19 HOH HOH . 
O 7 HOH A 45 345 15 HOH HOH . 
O 7 HOH A 46 346 13 HOH HOH . 
O 7 HOH A 47 347 28 HOH HOH . 
O 7 HOH A 48 348 14 HOH HOH . 
O 7 HOH A 49 349 67 HOH HOH . 
O 7 HOH A 50 350 45 HOH HOH . 
O 7 HOH A 51 351 5 HOH HOH . 
O 7 HOH A 52 352 56 HOH HOH . 
O 7 HOH A 53 353 34 HOH HOH . 
O 7 HOH A 54 354 85 HOH HOH . 
O 7 HOH A 55 355 49 HOH HOH . 
O 7 HOH A 56 356 17 HOH HOH . 
O 7 HOH A 57 357 96 HOH HOH . 
O 7 HOH A 58 358 97 HOH HOH . 
O 7 HOH A 59 359 24 HOH HOH . 
O 7 HOH A 60 360 6 HOH HOH . 
O 7 HOH A 61 361 82 HOH HOH . 
O 7 HOH A 62 362 15 HOH HOH . 
O 7 HOH A 63 363 23 HOH HOH . 
O 7 HOH A 64 364 86 HOH HOH . 
O 7 HOH A 65 365 92 HOH HOH . 
O 7 HOH A 66 366 57 HOH HOH . 
O 7 HOH A 67 367 8 HOH HOH . 
O 7 HOH A 68 368 13 HOH HOH . 
O 7 HOH A 69 369 47 HOH HOH . 
O 7 HOH A 70 370 21 HOH HOH . 
O 7 HOH A 71 371 22 HOH HOH . 
O 7 HOH A 72 372 43 HOH HOH . 
O 7 HOH A 73 373 37 HOH HOH . 
O 7 HOH A 74 374 19 HOH HOH . 
O 7 HOH A 75 375 69 HOH HOH . 
O 7 HOH A 76 376 11 HOH HOH . 
O 7 HOH A 77 377 43 HOH HOH . 
O 7 HOH A 78 378 20 HOH HOH . 
O 7 HOH A 79 379 23 HOH HOH . 
O 7 HOH A 80 380 33 HOH HOH . 
O 7 HOH A 81 381 25 HOH HOH . 
O 7 HOH A 82 382 50 HOH HOH . 
O 7 HOH A 83 383 76 HOH HOH . 
O 7 HOH A 84 384 18 HOH HOH . 
O 7 HOH A 85 385 101 HOH HOH . 
O 7 HOH A 86 386 29 HOH HOH . 
O 7 HOH A 87 387 27 HOH HOH . 
O 7 HOH A 88 388 68 HOH HOH . 
O 7 HOH A 89 389 66 HOH HOH . 
O 7 HOH A 90 390 3 HOH HOH . 
O 7 HOH A 91 391 39 HOH HOH . 
O 7 HOH A 92 392 36 HOH HOH . 
O 7 HOH A 93 393 20 HOH HOH . 
O 7 HOH A 94 394 38 HOH HOH . 
O 7 HOH A 95 395 26 HOH HOH . 
O 7 HOH A 96 396 80 HOH HOH . 
O 7 HOH A 97 397 98 HOH HOH . 
O 7 HOH A 98 398 83 HOH HOH . 
O 7 HOH A 99 399 91 HOH HOH . 
O 7 HOH A 100 400 1 HOH HOH . 
O 7 HOH A 101 401 28 HOH HOH . 
O 7 HOH A 102 402 90 HOH HOH . 
O 7 HOH A 103 403 2 HOH HOH . 
O 7 HOH A 104 404 4 HOH HOH . 
O 7 HOH A 105 405 60 HOH HOH . 
O 7 HOH A 106 406 64 HOH HOH . 
O 7 HOH A 107 407 9 HOH HOH . 
O 7 HOH A 108 408 69 HOH HOH . 
O 7 HOH A 109 409 81 HOH HOH . 
O 7 HOH A 110 410 93 HOH HOH . 
O 7 HOH A 111 411 7 HOH HOH . 
O 7 HOH A 112 412 65 HOH HOH . 
O 7 HOH A 113 413 63 HOH HOH . 
O 7 HOH A 114 414 56 HOH HOH . 
O 7 HOH A 115 415 12 HOH HOH . 
O 7 HOH A 116 416 54 HOH HOH . 
O 7 HOH A 117 417 73 HOH HOH . 
O 7 HOH A 118 418 72 HOH HOH . 
O 7 HOH A 119 419 6 HOH HOH . 
O 7 HOH A 120 420 51 HOH HOH . 
O 7 HOH A 121 421 45 HOH HOH . 
O 7 HOH A 122 422 32 HOH HOH . 
O 7 HOH A 123 423 61 HOH HOH . 
O 7 HOH A 124 424 71 HOH HOH . 
O 7 HOH A 125 425 51 HOH HOH . 
O 7 HOH A 126 426 31 HOH HOH . 
O 7 HOH A 127 427 36 HOH HOH . 
O 7 HOH A 128 428 62 HOH HOH . 
O 7 HOH A 129 429 70 HOH HOH . 
O 7 HOH A 130 430 76 HOH HOH . 
O 7 HOH A 131 431 78 HOH HOH . 
O 7 HOH A 132 432 52 HOH HOH . 
O 7 HOH A 133 433 100 HOH HOH . 
O 7 HOH A 134 434 53 HOH HOH . 
O 7 HOH A 135 435 18 HOH HOH . 
O 7 HOH A 136 436 67 HOH HOH . 
O 7 HOH A 137 437 84 HOH HOH . 
O 7 HOH A 138 438 92 HOH HOH . 
O 7 HOH A 139 439 84 HOH HOH . 
O 7 HOH A 140 440 99 HOH HOH . 
O 7 HOH A 141 441 95 HOH HOH . 
O 7 HOH A 142 442 59 HOH HOH . 
O 7 HOH A 143 443 87 HOH HOH . 
O 7 HOH A 144 444 40 HOH HOH . 
O 7 HOH A 145 445 88 HOH HOH . 
O 7 HOH A 146 446 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . A . G 4 16.402 -18.098 -7.486 0.5 81.38 ? N1 SPM 206 A 1 
HETATM 2 N N1 SPM . B . G 4 16.555 -17.164 -6.097 0.5 82.19 ? N1 SPM 206 A 1 
HETATM 3 C C2 SPM . A . G 4 17.59 -18.04 -8.32 0.5 81.04 ? C2 SPM 206 A 1 
HETATM 4 C C2 SPM . B . G 4 17.975 -17.363 -5.864 0.5 82.58 ? C2 SPM 206 A 1 
HETATM 5 C C3 SPM . A . G 4 18.833 -18.322 -7.48 0.5 80.25 ? C3 SPM 206 A 1 
HETATM 6 C C3 SPM . B . G 4 18.383 -18.798 -6.198 0.5 82.15 ? C3 SPM 206 A 1 
HETATM 7 C C4 SPM . A . G 4 19.489 -19.652 -7.849 0.5 78.99 ? C4 SPM 206 A 1 
HETATM 8 C C4 SPM . B . G 4 19.574 -18.855 -7.157 0.5 81.48 ? C4 SPM 206 A 1 
HETATM 9 N N5 SPM . A . G 4 20.788 -19.453 -8.473 0.5 76.08 ? N5 SPM 206 A 1 
HETATM 10 N N5 SPM . B . G 4 19.544 -20.062 -7.976 0.5 79.92 ? N5 SPM 206 A 1 
HETATM 11 C C6 SPM . A . G 4 20.89 -20.332 -9.624 0.5 72.15 ? C6 SPM 206 A 1 
HETATM 12 C C6 SPM . B . G 4 20.291 -19.85 -9.21 0.5 76.71 ? C6 SPM 206 A 1 
HETATM 13 C C7 SPM . A . G 4 22.298 -20.9 -9.778 0.5 68.74 ? C7 SPM 206 A 1 
HETATM 14 C C7 SPM . B . G 4 21.535 -20.737 -9.292 0.5 73.18 ? C7 SPM 206 A 1 
HETATM 15 C C8 SPM . A . G 4 22.431 -21.792 -11.011 0.5 67.11 ? C8 SPM 206 A 1 
HETATM 16 C C8 SPM . B . G 4 21.909 -21.11 -10.723 0.5 70.67 ? C8 SPM 206 A 1 
HETATM 17 C C9 SPM . A . G 4 22.238 -23.275 -10.694 0.5 67.04 ? C9 SPM 206 A 1 
HETATM 18 C C9 SPM . B . G 4 22.847 -22.311 -10.798 0.5 69.79 ? C9 SPM 206 A 1 
HETATM 19 N N10 SPM . A . G 4 23.499 -23.893 -10.322 0.5 67.45 ? N10 SPM 206 A 1 
HETATM 20 N N10 SPM . B . G 4 22.088 -23.545 -10.888 0.5 69.38 ? N10 SPM 206 A 1 
HETATM 21 C C11 SPM . A . G 4 23.253 -24.972 -9.379 0.5 68.47 ? C11 SPM 206 A 1 
HETATM 22 C C11 SPM . B . G 4 22.322 -24.356 -9.704 0.5 69.32 ? C11 SPM 206 A 1 
HETATM 23 C C12 SPM . A . G 4 24.543 -25.725 -9.066 0.5 69.26 ? C12 SPM 206 A 1 
HETATM 24 C C12 SPM . B . G 4 21.401 -25.576 -9.664 0.5 68.74 ? C12 SPM 206 A 1 
HETATM 25 C C13 SPM . A . G 4 24.831 -25.849 -7.574 0.5 70.4 ? C13 SPM 206 A 1 
HETATM 26 C C13 SPM . B . G 4 19.945 -25.262 -9.326 0.5 67.69 ? C13 SPM 206 A 1 
HETATM 27 N N14 SPM . A . G 4 26.237 -26.16 -7.37 0.5 71.42 ? N14 SPM 206 A 1 
HETATM 28 N N14 SPM . B . G 4 19.072 -26.323 -9.793 0.5 66.7 ? N14 SPM 206 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#