data_6RSK # _model_server_result.job_id gEmm3NsffCHM6MSjAwQamQ _model_server_result.datetime_utc '2024-11-13 10:05:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":210}' # _entry.id 6RSK # _exptl.entry_id 6RSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RSK _cell.length_a 100.459 _cell.length_b 100.459 _cell.length_c 89.539 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,Z 1 1 B,O,P,Q,R,S,T,U,V,W,X,Y,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 X N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CBC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? covale ? covale3 B SG CYS 19 B CYS 14 1_555 O CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale4 B SG CYS 22 B CYS 17 1_555 O CBC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 C FE HEC . A HEC 201 1_555 Z O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 B NE2 HIS 23 B HIS 18 1_555 O FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 O FE HEC . B HEC 201 1_555 AA O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 530 n n N1 HN11 SPM sing 531 n n N1 HN12 SPM sing 532 n n C2 C3 SPM sing 533 n n C2 H21 SPM sing 534 n n C2 H22 SPM sing 535 n n C3 C4 SPM sing 536 n n C3 H31 SPM sing 537 n n C3 H32 SPM sing 538 n n C4 N5 SPM sing 539 n n C4 H41 SPM sing 540 n n C4 H42 SPM sing 541 n n N5 C6 SPM sing 542 n n N5 HN5 SPM sing 543 n n C6 C7 SPM sing 544 n n C6 H61 SPM sing 545 n n C6 H62 SPM sing 546 n n C7 C8 SPM sing 547 n n C7 H71 SPM sing 548 n n C7 H72 SPM sing 549 n n C8 C9 SPM sing 550 n n C8 H81 SPM sing 551 n n C8 H82 SPM sing 552 n n C9 N10 SPM sing 553 n n C9 H91 SPM sing 554 n n C9 H92 SPM sing 555 n n N10 C11 SPM sing 556 n n N10 HN0 SPM sing 557 n n C11 C12 SPM sing 558 n n C11 H111 SPM sing 559 n n C11 H112 SPM sing 560 n n C12 C13 SPM sing 561 n n C12 H121 SPM sing 562 n n C12 H122 SPM sing 563 n n C13 N14 SPM sing 564 n n C13 H131 SPM sing 565 n n C13 H132 SPM sing 566 n n N14 HN41 SPM sing 567 n n N14 HN42 SPM sing 568 n n # _atom_sites.entry_id 6RSK _atom_sites.fract_transf_matrix[1][1] 0.009954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 201 HEC HEC . D 3 EVB A 1 202 202 EVB EVB . E 3 EVB A 1 203 203 EVB EVB . F 3 EVB A 1 204 204 EVB EVB . G 4 SO4 A 1 205 5 SO4 SO4 . H 4 SO4 A 1 206 6 SO4 SO4 . I 4 SO4 A 1 207 7 SO4 SO4 . J 4 SO4 A 1 208 8 SO4 SO4 . K 4 SO4 A 1 209 9 SO4 SO4 . L 4 SO4 A 1 210 10 SO4 SO4 . M 5 SPM A 1 211 1 SPM SPM . N 5 SPM A 1 212 2 SPM SPM . O 2 HEC B 1 201 201 HEC HEC . P 3 EVB B 1 202 202 EVB EVB . Q 3 EVB B 1 203 1 EVB EVB . R 3 EVB B 1 204 2 EVB EVB . S 4 SO4 B 1 205 1 SO4 SO4 . T 4 SO4 B 1 206 2 SO4 SO4 . U 4 SO4 B 1 207 3 SO4 SO4 . V 4 SO4 B 1 208 4 SO4 SO4 . W 4 SO4 B 1 209 11 SO4 SO4 . X 5 SPM B 1 210 3 SPM SPM . Y 5 SPM B 1 211 5 SPM SPM . Z 6 HOH A 1 301 179 HOH HOH . Z 6 HOH A 2 302 2 HOH HOH . Z 6 HOH A 3 303 5 HOH HOH . Z 6 HOH A 4 304 22 HOH HOH . Z 6 HOH A 5 305 176 HOH HOH . Z 6 HOH A 6 306 39 HOH HOH . Z 6 HOH A 7 307 112 HOH HOH . Z 6 HOH A 8 308 43 HOH HOH . Z 6 HOH A 9 309 189 HOH HOH . Z 6 HOH A 10 310 113 HOH HOH . Z 6 HOH A 11 311 21 HOH HOH . Z 6 HOH A 12 312 186 HOH HOH . Z 6 HOH A 13 313 20 HOH HOH . Z 6 HOH A 14 314 114 HOH HOH . Z 6 HOH A 15 315 173 HOH HOH . Z 6 HOH A 16 316 86 HOH HOH . Z 6 HOH A 17 317 9 HOH HOH . Z 6 HOH A 18 318 38 HOH HOH . Z 6 HOH A 19 319 116 HOH HOH . Z 6 HOH A 20 320 63 HOH HOH . Z 6 HOH A 21 321 16 HOH HOH . Z 6 HOH A 22 322 118 HOH HOH . Z 6 HOH A 23 323 117 HOH HOH . Z 6 HOH A 24 324 79 HOH HOH . Z 6 HOH A 25 325 7 HOH HOH . Z 6 HOH A 26 326 172 HOH HOH . Z 6 HOH A 27 327 170 HOH HOH . Z 6 HOH A 28 328 94 HOH HOH . Z 6 HOH A 29 329 30 HOH HOH . Z 6 HOH A 30 330 119 HOH HOH . Z 6 HOH A 31 331 10 HOH HOH . Z 6 HOH A 32 332 54 HOH HOH . Z 6 HOH A 33 333 138 HOH HOH . Z 6 HOH A 34 334 1 HOH HOH . Z 6 HOH A 35 335 18 HOH HOH . Z 6 HOH A 36 336 78 HOH HOH . Z 6 HOH A 37 337 68 HOH HOH . Z 6 HOH A 38 338 157 HOH HOH . Z 6 HOH A 39 339 19 HOH HOH . Z 6 HOH A 40 340 53 HOH HOH . Z 6 HOH A 41 341 13 HOH HOH . Z 6 HOH A 42 342 66 HOH HOH . Z 6 HOH A 43 343 12 HOH HOH . Z 6 HOH A 44 344 128 HOH HOH . Z 6 HOH A 45 345 174 HOH HOH . Z 6 HOH A 46 346 24 HOH HOH . Z 6 HOH A 47 347 158 HOH HOH . Z 6 HOH A 48 348 171 HOH HOH . Z 6 HOH A 49 349 35 HOH HOH . Z 6 HOH A 50 350 147 HOH HOH . Z 6 HOH A 51 351 3 HOH HOH . Z 6 HOH A 52 352 41 HOH HOH . Z 6 HOH A 53 353 84 HOH HOH . Z 6 HOH A 54 354 6 HOH HOH . Z 6 HOH A 55 355 121 HOH HOH . Z 6 HOH A 56 356 72 HOH HOH . Z 6 HOH A 57 357 88 HOH HOH . Z 6 HOH A 58 358 34 HOH HOH . Z 6 HOH A 59 359 108 HOH HOH . Z 6 HOH A 60 360 150 HOH HOH . Z 6 HOH A 61 361 33 HOH HOH . Z 6 HOH A 62 362 120 HOH HOH . Z 6 HOH A 63 363 133 HOH HOH . Z 6 HOH A 64 364 23 HOH HOH . Z 6 HOH A 65 365 64 HOH HOH . Z 6 HOH A 66 366 106 HOH HOH . Z 6 HOH A 67 367 89 HOH HOH . Z 6 HOH A 68 368 124 HOH HOH . Z 6 HOH A 69 369 4 HOH HOH . Z 6 HOH A 70 370 44 HOH HOH . Z 6 HOH A 71 371 32 HOH HOH . Z 6 HOH A 72 372 29 HOH HOH . Z 6 HOH A 73 373 27 HOH HOH . Z 6 HOH A 74 374 144 HOH HOH . Z 6 HOH A 75 375 96 HOH HOH . Z 6 HOH A 76 376 51 HOH HOH . Z 6 HOH A 77 377 61 HOH HOH . Z 6 HOH A 78 378 55 HOH HOH . Z 6 HOH A 79 379 36 HOH HOH . Z 6 HOH A 80 380 100 HOH HOH . Z 6 HOH A 81 381 42 HOH HOH . Z 6 HOH A 82 382 80 HOH HOH . Z 6 HOH A 83 383 45 HOH HOH . Z 6 HOH A 84 384 134 HOH HOH . Z 6 HOH A 85 385 175 HOH HOH . Z 6 HOH A 86 386 136 HOH HOH . Z 6 HOH A 87 387 162 HOH HOH . Z 6 HOH A 88 388 40 HOH HOH . Z 6 HOH A 89 389 130 HOH HOH . Z 6 HOH A 90 390 52 HOH HOH . Z 6 HOH A 91 391 77 HOH HOH . Z 6 HOH A 92 392 126 HOH HOH . Z 6 HOH A 93 393 125 HOH HOH . Z 6 HOH A 94 394 14 HOH HOH . Z 6 HOH A 95 395 87 HOH HOH . Z 6 HOH A 96 396 76 HOH HOH . Z 6 HOH A 97 397 155 HOH HOH . Z 6 HOH A 98 398 75 HOH HOH . Z 6 HOH A 99 399 60 HOH HOH . Z 6 HOH A 100 400 67 HOH HOH . Z 6 HOH A 101 401 180 HOH HOH . Z 6 HOH A 102 402 25 HOH HOH . Z 6 HOH A 103 403 160 HOH HOH . Z 6 HOH A 104 404 181 HOH HOH . Z 6 HOH A 105 405 98 HOH HOH . Z 6 HOH A 106 406 151 HOH HOH . Z 6 HOH A 107 407 95 HOH HOH . Z 6 HOH A 108 408 37 HOH HOH . Z 6 HOH A 109 409 152 HOH HOH . Z 6 HOH A 110 410 182 HOH HOH . Z 6 HOH A 111 411 149 HOH HOH . Z 6 HOH A 112 412 83 HOH HOH . Z 6 HOH A 113 413 85 HOH HOH . Z 6 HOH A 114 414 165 HOH HOH . Z 6 HOH A 115 415 59 HOH HOH . Z 6 HOH A 116 416 109 HOH HOH . Z 6 HOH A 117 417 188 HOH HOH . Z 6 HOH A 118 418 73 HOH HOH . Z 6 HOH A 119 419 69 HOH HOH . Z 6 HOH A 120 420 58 HOH HOH . Z 6 HOH A 121 421 148 HOH HOH . Z 6 HOH A 122 422 107 HOH HOH . Z 6 HOH A 123 423 159 HOH HOH . Z 6 HOH A 124 424 122 HOH HOH . Z 6 HOH A 125 425 111 HOH HOH . Z 6 HOH A 126 426 163 HOH HOH . Z 6 HOH A 127 427 97 HOH HOH . Z 6 HOH A 128 428 164 HOH HOH . Z 6 HOH A 129 429 183 HOH HOH . Z 6 HOH A 130 430 154 HOH HOH . Z 6 HOH A 131 431 129 HOH HOH . Z 6 HOH A 132 432 168 HOH HOH . AA 6 HOH B 1 301 185 HOH HOH . AA 6 HOH B 2 302 135 HOH HOH . AA 6 HOH B 3 303 190 HOH HOH . AA 6 HOH B 4 304 26 HOH HOH . AA 6 HOH B 5 305 71 HOH HOH . AA 6 HOH B 6 306 17 HOH HOH . AA 6 HOH B 7 307 31 HOH HOH . AA 6 HOH B 8 308 81 HOH HOH . AA 6 HOH B 9 309 187 HOH HOH . AA 6 HOH B 10 310 104 HOH HOH . AA 6 HOH B 11 311 115 HOH HOH . AA 6 HOH B 12 312 46 HOH HOH . AA 6 HOH B 13 313 74 HOH HOH . AA 6 HOH B 14 314 184 HOH HOH . AA 6 HOH B 15 315 145 HOH HOH . AA 6 HOH B 16 316 90 HOH HOH . AA 6 HOH B 17 317 161 HOH HOH . AA 6 HOH B 18 318 82 HOH HOH . AA 6 HOH B 19 319 70 HOH HOH . AA 6 HOH B 20 320 47 HOH HOH . AA 6 HOH B 21 321 127 HOH HOH . AA 6 HOH B 22 322 65 HOH HOH . AA 6 HOH B 23 323 49 HOH HOH . AA 6 HOH B 24 324 56 HOH HOH . AA 6 HOH B 25 325 62 HOH HOH . AA 6 HOH B 26 326 132 HOH HOH . AA 6 HOH B 27 327 57 HOH HOH . AA 6 HOH B 28 328 105 HOH HOH . AA 6 HOH B 29 329 166 HOH HOH . AA 6 HOH B 30 330 48 HOH HOH . AA 6 HOH B 31 331 50 HOH HOH . AA 6 HOH B 32 332 141 HOH HOH . AA 6 HOH B 33 333 178 HOH HOH . AA 6 HOH B 34 334 143 HOH HOH . AA 6 HOH B 35 335 153 HOH HOH . AA 6 HOH B 36 336 15 HOH HOH . AA 6 HOH B 37 337 139 HOH HOH . AA 6 HOH B 38 338 167 HOH HOH . AA 6 HOH B 39 339 101 HOH HOH . AA 6 HOH B 40 340 137 HOH HOH . AA 6 HOH B 41 341 131 HOH HOH . AA 6 HOH B 42 342 91 HOH HOH . AA 6 HOH B 43 343 92 HOH HOH . AA 6 HOH B 44 344 169 HOH HOH . AA 6 HOH B 45 345 142 HOH HOH . AA 6 HOH B 46 346 93 HOH HOH . AA 6 HOH B 47 347 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . X 5 -31.394 -1.837 19.126 1 94.53 ? N1 SPM 210 B 1 HETATM 2 C C2 SPM . . . X 5 -31.009 -0.437 19.102 1 94.21 ? C2 SPM 210 B 1 HETATM 3 C C3 SPM . . . X 5 -29.486 -0.295 19.133 1 94.68 ? C3 SPM 210 B 1 HETATM 4 C C4 SPM . . . X 5 -29.017 1.156 19.287 1 94.48 ? C4 SPM 210 B 1 HETATM 5 N N5 SPM . . . X 5 -28.198 1.561 18.152 1 94.26 ? N5 SPM 210 B 1 HETATM 6 C C6 SPM . . . X 5 -28.44 2.961 17.83 1 93.54 ? C6 SPM 210 B 1 HETATM 7 C C7 SPM . . . X 5 -28.563 3.181 16.323 1 92.29 ? C7 SPM 210 B 1 HETATM 8 C C8 SPM . . . X 5 -29.575 4.274 15.99 1 92.18 ? C8 SPM 210 B 1 HETATM 9 C C9 SPM . . . X 5 -28.906 5.492 15.363 1 93.89 ? C9 SPM 210 B 1 HETATM 10 N N10 SPM . . . X 5 -29.893 6.511 15.052 1 96.02 ? N10 SPM 210 B 1 HETATM 11 C C11 SPM . . . X 5 -29.291 7.554 14.234 1 97.57 ? C11 SPM 210 B 1 HETATM 12 C C12 SPM . . . X 5 -29.836 8.93 14.626 1 99.06 ? C12 SPM 210 B 1 HETATM 13 C C13 SPM . . . X 5 -30.196 9.802 13.418 1 99.9 ? C13 SPM 210 B 1 HETATM 14 N N14 SPM . . . X 5 -29.908 11.208 13.672 1 98.93 ? N14 SPM 210 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 138 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 458 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #