data_6RST # _model_server_result.job_id uChEe1AvWGdl6jjkizbwng _model_server_result.datetime_utc '2024-11-26 21:14:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6RST # _exptl.entry_id 6RST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.594 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-[(1~{R})-1-[2-[[5-[1-(cyclopropylmethyl)pyrazol-4-yl]-1~{H}-benzimidazol-2-yl]amino]pyridin-4-yl]ethyl]piperazin-1-yl]-3,3,3-tris(fluoranyl)propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RST _cell.length_a 136.354 _cell.length_b 136.354 _cell.length_c 87.195 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RST _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 1 A,B 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 y,x,-z+2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 174.39 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 F3 N8 O' _chem_comp.formula_weight 552.594 _chem_comp.id KHQ _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-[(1~{R})-1-[2-[[5-[1-(cyclopropylmethyl)pyrazol-4-yl]-1~{H}-benzimidazol-2-yl]amino]pyridin-4-yl]ethyl]piperazin-1-yl]-3,3,3-tris(fluoranyl)propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C6 KHQ sing 171 n n C18 C19 KHQ sing 172 n n C18 N10 KHQ sing 173 n n C19 N7 KHQ sing 174 n n F17 C14 KHQ sing 175 n n C13 C14 KHQ sing 176 n n C13 C11 KHQ sing 177 n n N7 C6 KHQ sing 178 n n N7 C8 KHQ sing 179 n n C6 C5 KHQ sing 180 n n C14 F15 KHQ sing 181 n n C14 F16 KHQ sing 182 n n C4 C5 KHQ doub 183 n y C4 C3 KHQ sing 184 n y N10 C11 KHQ sing 185 n n N10 C9 KHQ sing 186 n n C11 O12 KHQ doub 187 n n C5 C21 KHQ sing 188 n y C3 N2 KHQ doub 189 n y C9 C8 KHQ sing 190 n n C21 C1 KHQ doub 191 n y N2 C1 KHQ sing 192 n y C1 N22 KHQ sing 193 n n N22 C23 KHQ sing 194 n n N40 C23 KHQ doub 195 n y N40 C26 KHQ sing 196 n y C23 N24 KHQ sing 197 n y C36 C37 KHQ sing 198 n n C36 C35 KHQ sing 199 n n C26 C27 KHQ doub 200 n y C26 C25 KHQ sing 201 n y C37 C35 KHQ sing 202 n n N24 C25 KHQ sing 203 n y C27 C28 KHQ sing 204 n y C25 C30 KHQ doub 205 n y C35 C34 KHQ sing 206 n n C32 C31 KHQ doub 207 n y C32 N33 KHQ sing 208 n y C28 C31 KHQ sing 209 n n C28 C29 KHQ doub 210 n y C34 N33 KHQ sing 211 n n C30 C29 KHQ sing 212 n y C31 C39 KHQ sing 213 n y N33 N38 KHQ sing 214 n y C39 N38 KHQ doub 215 n y C4 H1 KHQ sing 216 n n C6 H2 KHQ sing 217 n n C8 H3 KHQ sing 218 n n C8 H4 KHQ sing 219 n n C9 H5 KHQ sing 220 n n C9 H6 KHQ sing 221 n n C13 H7 KHQ sing 222 n n C13 H8 KHQ sing 223 n n C3 H9 KHQ sing 224 n n C18 H10 KHQ sing 225 n n C18 H11 KHQ sing 226 n n C19 H12 KHQ sing 227 n n C19 H13 KHQ sing 228 n n C20 H14 KHQ sing 229 n n C20 H15 KHQ sing 230 n n C20 H16 KHQ sing 231 n n C21 H17 KHQ sing 232 n n C27 H18 KHQ sing 233 n n C29 H19 KHQ sing 234 n n C30 H20 KHQ sing 235 n n C32 H21 KHQ sing 236 n n C34 H22 KHQ sing 237 n n C34 H23 KHQ sing 238 n n C35 H24 KHQ sing 239 n n C36 H25 KHQ sing 240 n n C36 H26 KHQ sing 241 n n C37 H27 KHQ sing 242 n n C37 H28 KHQ sing 243 n n C39 H29 KHQ sing 244 n n N22 H30 KHQ sing 245 n n N24 H31 KHQ sing 246 n n # _atom_sites.entry_id 6RST _atom_sites.fract_transf_matrix[1][1] 0.007334 _atom_sites.fract_transf_matrix[1][2] 0.004234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KHQ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id KHQ _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 KHQ . . . B 2 44.708 99.522 95.609 1 92.86 ? C4 KHQ 701 A 1 HETATM 2 C C14 KHQ . . . B 2 51.366 102.985 95.484 1 117.63 ? C14 KHQ 701 A 1 HETATM 3 C C5 KHQ . . . B 2 45.516 98.546 96.175 1 96.59 ? C5 KHQ 701 A 1 HETATM 4 C C6 KHQ . . . B 2 46.458 97.694 95.332 1 100.26 ? C6 KHQ 701 A 1 HETATM 5 C C11 KHQ . . . B 2 50.498 100.666 96.092 1 115.06 ? C11 KHQ 701 A 1 HETATM 6 C C8 KHQ . . . B 2 48.391 98.322 96.692 1 98.97 ? C8 KHQ 701 A 1 HETATM 7 C C9 KHQ . . . B 2 49.927 98.33 96.564 1 103.81 ? C9 KHQ 701 A 1 HETATM 8 C C13 KHQ . . . B 2 50.473 101.818 95.087 1 116.93 ? C13 KHQ 701 A 1 HETATM 9 N N2 KHQ . . . B 2 43.857 100.073 97.735 1 94.03 ? N2 KHQ 701 A 1 HETATM 10 C C3 KHQ . . . B 2 43.873 100.273 96.428 1 96.29 ? C3 KHQ 701 A 1 HETATM 11 C C1 KHQ . . . B 2 44.623 99.124 98.283 1 94.61 ? C1 KHQ 701 A 1 HETATM 12 C C18 KHQ . . . B 2 49.716 99.176 94.308 1 107.67 ? C18 KHQ 701 A 1 HETATM 13 C C19 KHQ . . . B 2 48.803 97.933 94.346 1 96.69 ? C19 KHQ 701 A 1 HETATM 14 C C20 KHQ . . . B 2 45.927 97.626 93.904 1 101.89 ? C20 KHQ 701 A 1 HETATM 15 C C21 KHQ . . . B 2 45.47 98.349 97.53 1 96.33 ? C21 KHQ 701 A 1 HETATM 16 C C23 KHQ . . . B 2 43.932 99.503 100.453 1 91.94 ? C23 KHQ 701 A 1 HETATM 17 C C25 KHQ . . . B 2 43.241 99.983 102.383 1 93.8 ? C25 KHQ 701 A 1 HETATM 18 C C26 KHQ . . . B 2 42.709 100.882 101.47 1 92.56 ? C26 KHQ 701 A 1 HETATM 19 C C27 KHQ . . . B 2 41.854 101.871 101.908 1 97.1 ? C27 KHQ 701 A 1 HETATM 20 C C28 KHQ . . . B 2 41.551 101.926 103.258 1 100.05 ? C28 KHQ 701 A 1 HETATM 21 C C29 KHQ . . . B 2 42.077 101.024 104.168 1 97.62 ? C29 KHQ 701 A 1 HETATM 22 C C30 KHQ . . . B 2 42.942 100.042 103.73 1 95.62 ? C30 KHQ 701 A 1 HETATM 23 C C31 KHQ . . . B 2 40.724 102.915 103.732 1 110.91 ? C31 KHQ 701 A 1 HETATM 24 C C32 KHQ . . . B 2 40.169 103.9 103.033 1 117.56 ? C32 KHQ 701 A 1 HETATM 25 C C34 KHQ . . . B 2 38.689 105.835 103.67 1 118.12 ? C34 KHQ 701 A 1 HETATM 26 C C35 KHQ . . . B 2 39.217 106.688 102.495 1 126.73 ? C35 KHQ 701 A 1 HETATM 27 C C36 KHQ . . . B 2 39.133 106.042 101.11 1 130.87 ? C36 KHQ 701 A 1 HETATM 28 C C37 KHQ . . . B 2 38.215 107.224 101.479 1 130.19 ? C37 KHQ 701 A 1 HETATM 29 C C39 KHQ . . . B 2 40.352 103.05 104.995 1 114.43 ? C39 KHQ 701 A 1 HETATM 30 F F15 KHQ . . . B 2 52.643 102.624 95.487 1 119.7 ? F15 KHQ 701 A 1 HETATM 31 F F16 KHQ . . . B 2 51.072 103.288 96.746 1 114 ? F16 KHQ 701 A 1 HETATM 32 F F17 KHQ . . . B 2 51.117 104.034 94.703 1 119.51 ? F17 KHQ 701 A 1 HETATM 33 N N10 KHQ . . . B 2 50.137 99.451 95.688 1 110.74 ? N10 KHQ 701 A 1 HETATM 34 N N22 KHQ . . . B 2 44.648 98.865 99.569 1 93.72 ? N22 KHQ 701 A 1 HETATM 35 N N24 KHQ . . . B 2 44.032 99.162 101.726 1 92.95 ? N24 KHQ 701 A 1 HETATM 36 N N33 KHQ . . . B 2 39.47 104.611 103.919 1 120.02 ? N33 KHQ 701 A 1 HETATM 37 N N38 KHQ . . . B 2 39.574 104.13 105.05 1 120.76 ? N38 KHQ 701 A 1 HETATM 38 N N40 KHQ . . . B 2 43.178 100.571 100.27 1 89.6 ? N40 KHQ 701 A 1 HETATM 39 N N7 KHQ . . . B 2 47.787 98.338 95.32 1 99.25 ? N7 KHQ 701 A 1 HETATM 40 O O12 KHQ . . . B 2 50.751 100.869 97.28 1 111.89 ? O12 KHQ 701 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #