data_6RSX # _model_server_result.job_id llUatMa4B9bQ6XXXAY8CuQ _model_server_result.datetime_utc '2025-04-14 12:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6RSX # _exptl.entry_id 6RSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RSX _cell.length_a 80.586 _cell.length_b 80.586 _cell.length_c 110.755 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 6RSX _atom_sites.fract_transf_matrix[1][1] 0.012409 _atom_sites.fract_transf_matrix[1][2] 0.007164 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 501 3 CMP CMP . C 2 CMP A 1 502 4 CMP CMP . D 3 HOH A 1 601 220 HOH HOH . D 3 HOH A 2 602 124 HOH HOH . D 3 HOH A 3 603 63 HOH HOH . D 3 HOH A 4 604 17 HOH HOH . D 3 HOH A 5 605 93 HOH HOH . D 3 HOH A 6 606 58 HOH HOH . D 3 HOH A 7 607 24 HOH HOH . D 3 HOH A 8 608 138 HOH HOH . D 3 HOH A 9 609 41 HOH HOH . D 3 HOH A 10 610 3 HOH HOH . D 3 HOH A 11 611 32 HOH HOH . D 3 HOH A 12 612 37 HOH HOH . D 3 HOH A 13 613 163 HOH HOH . D 3 HOH A 14 614 181 HOH HOH . D 3 HOH A 15 615 85 HOH HOH . D 3 HOH A 16 616 44 HOH HOH . D 3 HOH A 17 617 87 HOH HOH . D 3 HOH A 18 618 55 HOH HOH . D 3 HOH A 19 619 106 HOH HOH . D 3 HOH A 20 620 7 HOH HOH . D 3 HOH A 21 621 141 HOH HOH . D 3 HOH A 22 622 128 HOH HOH . D 3 HOH A 23 623 13 HOH HOH . D 3 HOH A 24 624 73 HOH HOH . D 3 HOH A 25 625 2 HOH HOH . D 3 HOH A 26 626 49 HOH HOH . D 3 HOH A 27 627 59 HOH HOH . D 3 HOH A 28 628 5 HOH HOH . D 3 HOH A 29 629 224 HOH HOH . D 3 HOH A 30 630 170 HOH HOH . D 3 HOH A 31 631 211 HOH HOH . D 3 HOH A 32 632 1 HOH HOH . D 3 HOH A 33 633 222 HOH HOH . D 3 HOH A 34 634 31 HOH HOH . D 3 HOH A 35 635 54 HOH HOH . D 3 HOH A 36 636 52 HOH HOH . D 3 HOH A 37 637 66 HOH HOH . D 3 HOH A 38 638 45 HOH HOH . D 3 HOH A 39 639 212 HOH HOH . D 3 HOH A 40 640 21 HOH HOH . D 3 HOH A 41 641 33 HOH HOH . D 3 HOH A 42 642 11 HOH HOH . D 3 HOH A 43 643 46 HOH HOH . D 3 HOH A 44 644 42 HOH HOH . D 3 HOH A 45 645 173 HOH HOH . D 3 HOH A 46 646 22 HOH HOH . D 3 HOH A 47 647 10 HOH HOH . D 3 HOH A 48 648 50 HOH HOH . D 3 HOH A 49 649 70 HOH HOH . D 3 HOH A 50 650 56 HOH HOH . D 3 HOH A 51 651 16 HOH HOH . D 3 HOH A 52 652 95 HOH HOH . D 3 HOH A 53 653 90 HOH HOH . D 3 HOH A 54 654 14 HOH HOH . D 3 HOH A 55 655 9 HOH HOH . D 3 HOH A 56 656 133 HOH HOH . D 3 HOH A 57 657 27 HOH HOH . D 3 HOH A 58 658 43 HOH HOH . D 3 HOH A 59 659 179 HOH HOH . D 3 HOH A 60 660 105 HOH HOH . D 3 HOH A 61 661 160 HOH HOH . D 3 HOH A 62 662 35 HOH HOH . D 3 HOH A 63 663 6 HOH HOH . D 3 HOH A 64 664 98 HOH HOH . D 3 HOH A 65 665 142 HOH HOH . D 3 HOH A 66 666 216 HOH HOH . D 3 HOH A 67 667 57 HOH HOH . D 3 HOH A 68 668 30 HOH HOH . D 3 HOH A 69 669 67 HOH HOH . D 3 HOH A 70 670 164 HOH HOH . D 3 HOH A 71 671 25 HOH HOH . D 3 HOH A 72 672 15 HOH HOH . D 3 HOH A 73 673 223 HOH HOH . D 3 HOH A 74 674 8 HOH HOH . D 3 HOH A 75 675 23 HOH HOH . D 3 HOH A 76 676 36 HOH HOH . D 3 HOH A 77 677 94 HOH HOH . D 3 HOH A 78 678 96 HOH HOH . D 3 HOH A 79 679 227 HOH HOH . D 3 HOH A 80 680 79 HOH HOH . D 3 HOH A 81 681 38 HOH HOH . D 3 HOH A 82 682 205 HOH HOH . D 3 HOH A 83 683 155 HOH HOH . D 3 HOH A 84 684 213 HOH HOH . D 3 HOH A 85 685 81 HOH HOH . D 3 HOH A 86 686 71 HOH HOH . D 3 HOH A 87 687 77 HOH HOH . D 3 HOH A 88 688 68 HOH HOH . D 3 HOH A 89 689 102 HOH HOH . D 3 HOH A 90 690 18 HOH HOH . D 3 HOH A 91 691 76 HOH HOH . D 3 HOH A 92 692 225 HOH HOH . D 3 HOH A 93 693 72 HOH HOH . D 3 HOH A 94 694 219 HOH HOH . D 3 HOH A 95 695 108 HOH HOH . D 3 HOH A 96 696 147 HOH HOH . D 3 HOH A 97 697 125 HOH HOH . D 3 HOH A 98 698 143 HOH HOH . D 3 HOH A 99 699 69 HOH HOH . D 3 HOH A 100 700 60 HOH HOH . D 3 HOH A 101 701 180 HOH HOH . D 3 HOH A 102 702 19 HOH HOH . D 3 HOH A 103 703 226 HOH HOH . D 3 HOH A 104 704 120 HOH HOH . D 3 HOH A 105 705 156 HOH HOH . D 3 HOH A 106 706 47 HOH HOH . D 3 HOH A 107 707 185 HOH HOH . D 3 HOH A 108 708 221 HOH HOH . D 3 HOH A 109 709 116 HOH HOH . D 3 HOH A 110 710 151 HOH HOH . D 3 HOH A 111 711 150 HOH HOH . D 3 HOH A 112 712 4 HOH HOH . D 3 HOH A 113 713 61 HOH HOH . D 3 HOH A 114 714 176 HOH HOH . D 3 HOH A 115 715 84 HOH HOH . D 3 HOH A 116 716 80 HOH HOH . D 3 HOH A 117 717 91 HOH HOH . D 3 HOH A 118 718 132 HOH HOH . D 3 HOH A 119 719 28 HOH HOH . D 3 HOH A 120 720 154 HOH HOH . D 3 HOH A 121 721 97 HOH HOH . D 3 HOH A 122 722 40 HOH HOH . D 3 HOH A 123 723 26 HOH HOH . D 3 HOH A 124 724 228 HOH HOH . D 3 HOH A 125 725 183 HOH HOH . D 3 HOH A 126 726 104 HOH HOH . D 3 HOH A 127 727 158 HOH HOH . D 3 HOH A 128 728 75 HOH HOH . D 3 HOH A 129 729 20 HOH HOH . D 3 HOH A 130 730 101 HOH HOH . D 3 HOH A 131 731 189 HOH HOH . D 3 HOH A 132 732 92 HOH HOH . D 3 HOH A 133 733 148 HOH HOH . D 3 HOH A 134 734 65 HOH HOH . D 3 HOH A 135 735 165 HOH HOH . D 3 HOH A 136 736 174 HOH HOH . D 3 HOH A 137 737 229 HOH HOH . D 3 HOH A 138 738 48 HOH HOH . D 3 HOH A 139 739 162 HOH HOH . D 3 HOH A 140 740 130 HOH HOH . D 3 HOH A 141 741 178 HOH HOH . D 3 HOH A 142 742 118 HOH HOH . D 3 HOH A 143 743 215 HOH HOH . D 3 HOH A 144 744 218 HOH HOH . D 3 HOH A 145 745 53 HOH HOH . D 3 HOH A 146 746 29 HOH HOH . D 3 HOH A 147 747 194 HOH HOH . D 3 HOH A 148 748 82 HOH HOH . D 3 HOH A 149 749 74 HOH HOH . D 3 HOH A 150 750 64 HOH HOH . D 3 HOH A 151 751 230 HOH HOH . D 3 HOH A 152 752 210 HOH HOH . D 3 HOH A 153 753 198 HOH HOH . D 3 HOH A 154 754 83 HOH HOH . D 3 HOH A 155 755 196 HOH HOH . D 3 HOH A 156 756 62 HOH HOH . D 3 HOH A 157 757 89 HOH HOH . D 3 HOH A 158 758 109 HOH HOH . D 3 HOH A 159 759 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 2 39.696 -9.971 19.367 1 40.29 ? P CMP 502 A 1 HETATM 2 O O1P CMP . . . C 2 39.163 -8.923 18.229 1 48.25 ? O1P CMP 502 A 1 HETATM 3 O O2P CMP . . . C 2 39.467 -9.579 20.775 1 42.09 ? O2P CMP 502 A 1 HETATM 4 O O5' CMP . . . C 2 41.279 -10.076 19.205 1 41.72 ? O5' CMP 502 A 1 HETATM 5 C C5' CMP . . . C 2 41.962 -11.216 19.74 1 40.23 ? C5' CMP 502 A 1 HETATM 6 C C4' CMP . . . C 2 41.175 -12.444 19.367 1 37.75 ? C4' CMP 502 A 1 HETATM 7 O O4' CMP . . . C 2 41.666 -13.685 19.901 1 39.83 ? O4' CMP 502 A 1 HETATM 8 C C3' CMP . . . C 2 39.727 -12.48 19.778 1 36.55 ? C3' CMP 502 A 1 HETATM 9 O O3' CMP . . . C 2 38.944 -11.462 19.157 1 37.53 ? O3' CMP 502 A 1 HETATM 10 C C2' CMP . . . C 2 39.343 -13.903 19.403 1 43.68 ? C2' CMP 502 A 1 HETATM 11 O O2' CMP . . . C 2 39.068 -13.951 17.989 1 41.34 ? O2' CMP 502 A 1 HETATM 12 C C1' CMP . . . C 2 40.674 -14.655 19.645 1 42.13 ? C1' CMP 502 A 1 HETATM 13 N N9 CMP . . . C 2 40.616 -15.644 20.726 1 41.66 ? N9 CMP 502 A 1 HETATM 14 C C8 CMP . . . C 2 40.921 -16.939 20.587 1 39.19 ? C8 CMP 502 A 1 HETATM 15 N N7 CMP . . . C 2 40.758 -17.519 21.772 1 46.03 ? N7 CMP 502 A 1 HETATM 16 C C5 CMP . . . C 2 40.381 -16.561 22.636 1 43.79 ? C5 CMP 502 A 1 HETATM 17 C C6 CMP . . . C 2 40.095 -16.639 23.977 1 45 ? C6 CMP 502 A 1 HETATM 18 N N6 CMP . . . C 2 40.104 -17.757 24.876 1 48.57 ? N6 CMP 502 A 1 HETATM 19 N N1 CMP . . . C 2 39.716 -15.563 24.64 1 42.27 ? N1 CMP 502 A 1 HETATM 20 C C2 CMP . . . C 2 39.628 -14.376 23.982 1 46.74 ? C2 CMP 502 A 1 HETATM 21 N N3 CMP . . . C 2 39.903 -14.292 22.637 1 39.78 ? N3 CMP 502 A 1 HETATM 22 C C4 CMP . . . C 2 40.29 -15.398 22 1 43.1 ? C4 CMP 502 A 1 HETATM 23 H "H5'1" CMP . . . C 2 42.015 -11.142 20.706 1 48.28 ? "H5'1" CMP 502 A 1 HETATM 24 H "H5'2" CMP . . . C 2 42.853 -11.271 19.361 1 48.28 ? "H5'2" CMP 502 A 1 HETATM 25 H H4' CMP . . . C 2 41.204 -12.518 18.401 1 45.3 ? H4' CMP 502 A 1 HETATM 26 H H3' CMP . . . C 2 39.669 -12.381 20.741 1 43.87 ? H3' CMP 502 A 1 HETATM 27 H H2' CMP . . . C 2 38.617 -14.248 19.946 1 52.42 ? H2' CMP 502 A 1 HETATM 28 H HO2' CMP . . . C 2 38.781 -14.724 17.783 1 49.61 ? HO2' CMP 502 A 1 HETATM 29 H H1' CMP . . . C 2 40.91 -15.115 18.824 1 50.55 ? H1' CMP 502 A 1 HETATM 30 H H8 CMP . . . C 2 41.183 -17.36 19.801 1 47.02 ? H8 CMP 502 A 1 HETATM 31 H HN61 CMP . . . C 2 39.73 -17.692 25.648 1 58.28 ? HN61 CMP 502 A 1 HETATM 32 H HN62 CMP . . . C 2 40.482 -18.494 24.643 1 58.28 ? HN62 CMP 502 A 1 HETATM 33 H H2 CMP . . . C 2 39.365 -13.613 24.445 1 56.09 ? H2 CMP 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #