data_6RSY
#
_model_server_result.job_id            q3DapCVDEhPt2THuLKgcNg 
_model_server_result.datetime_utc      '2024-12-28 04:11:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rsy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6RSY 
#
_exptl.entry_id    6RSY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RSY 
_cell.length_a            94.61 
_cell.length_b            114.75 
_cell.length_c            185.39 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RSY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,N,O,P,Q 1 1 
F,G,H,I,J,M,R,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 102 1_555 A SG CYS 164 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 203 A CYS 204 1_555 A SG CYS 259 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf3 B SG CYS 26 B CYS 26 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf5 D SG CYS 137 D CYS 137 1_555 D SG CYS 187 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 D SG CYS 162 D CYS 162 1_555 E SG CYS 172 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 E SG CYS 24 E CYS 24 1_555 E SG CYS 93 E CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf8 E SG CYS 146 E CYS 146 1_555 E SG CYS 211 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf9 F SG CYS 101 F CYS 102 1_555 F SG CYS 164 F CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf10 F SG CYS 203 F CYS 204 1_555 F SG CYS 259 F CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf11 G SG CYS 26 G CYS 26 1_555 G SG CYS 81 G CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf12 I SG CYS 24 I CYS 24 1_555 I SG CYS 90 I CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf13 I SG CYS 137 I CYS 137 1_555 I SG CYS 187 I CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf14 I SG CYS 162 I CYS 162 1_555 J SG CYS 172 J CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf15 J SG CYS 24 J CYS 24 1_555 J SG CYS 93 J CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf16 J SG CYS 146 J CYS 146 1_555 J SG CYS 211 J CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6RSY 
_atom_sites.fract_transf_matrix[1][1]    0.01057 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008715 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 EDO A 1 301 2 EDO EDO . 
L 6 EDO A 1 302 3 EDO EDO . 
M 6 EDO F 1 301 1 EDO EDO . 
N 7 HOH A 1 401 57 HOH HOH . 
N 7 HOH A 2 402 14 HOH HOH . 
N 7 HOH A 3 403 1 HOH HOH . 
N 7 HOH A 4 404 89 HOH HOH . 
N 7 HOH A 5 405 94 HOH HOH . 
N 7 HOH A 6 406 13 HOH HOH . 
N 7 HOH A 7 407 119 HOH HOH . 
N 7 HOH A 8 408 97 HOH HOH . 
N 7 HOH A 9 409 141 HOH HOH . 
N 7 HOH A 10 410 59 HOH HOH . 
N 7 HOH A 11 411 32 HOH HOH . 
N 7 HOH A 12 412 4 HOH HOH . 
N 7 HOH A 13 413 90 HOH HOH . 
N 7 HOH A 14 414 55 HOH HOH . 
N 7 HOH A 15 415 58 HOH HOH . 
N 7 HOH A 16 416 62 HOH HOH . 
N 7 HOH A 17 417 22 HOH HOH . 
N 7 HOH A 18 418 83 HOH HOH . 
N 7 HOH A 19 419 101 HOH HOH . 
N 7 HOH A 20 420 153 HOH HOH . 
N 7 HOH A 21 421 149 HOH HOH . 
N 7 HOH A 22 422 122 HOH HOH . 
N 7 HOH A 23 423 126 HOH HOH . 
N 7 HOH A 24 424 135 HOH HOH . 
N 7 HOH A 25 425 61 HOH HOH . 
N 7 HOH A 26 426 127 HOH HOH . 
N 7 HOH A 27 427 67 HOH HOH . 
O 7 HOH B 1 201 17 HOH HOH . 
O 7 HOH B 2 202 37 HOH HOH . 
O 7 HOH B 3 203 98 HOH HOH . 
O 7 HOH B 4 204 154 HOH HOH . 
O 7 HOH B 5 205 146 HOH HOH . 
O 7 HOH B 6 206 114 HOH HOH . 
P 7 HOH D 1 301 3 HOH HOH . 
P 7 HOH D 2 302 39 HOH HOH . 
P 7 HOH D 3 303 35 HOH HOH . 
P 7 HOH D 4 304 91 HOH HOH . 
P 7 HOH D 5 305 60 HOH HOH . 
P 7 HOH D 6 306 100 HOH HOH . 
P 7 HOH D 7 307 24 HOH HOH . 
P 7 HOH D 8 308 36 HOH HOH . 
P 7 HOH D 9 309 129 HOH HOH . 
P 7 HOH D 10 310 125 HOH HOH . 
P 7 HOH D 11 311 143 HOH HOH . 
P 7 HOH D 12 312 78 HOH HOH . 
P 7 HOH D 13 313 40 HOH HOH . 
P 7 HOH D 14 314 87 HOH HOH . 
Q 7 HOH E 1 301 112 HOH HOH . 
Q 7 HOH E 2 302 6 HOH HOH . 
Q 7 HOH E 3 303 79 HOH HOH . 
Q 7 HOH E 4 304 103 HOH HOH . 
Q 7 HOH E 5 305 77 HOH HOH . 
Q 7 HOH E 6 306 140 HOH HOH . 
Q 7 HOH E 7 307 130 HOH HOH . 
Q 7 HOH E 8 308 11 HOH HOH . 
Q 7 HOH E 9 309 82 HOH HOH . 
Q 7 HOH E 10 310 151 HOH HOH . 
Q 7 HOH E 11 311 80 HOH HOH . 
Q 7 HOH E 12 312 147 HOH HOH . 
Q 7 HOH E 13 313 2 HOH HOH . 
Q 7 HOH E 14 314 51 HOH HOH . 
Q 7 HOH E 15 315 76 HOH HOH . 
Q 7 HOH E 16 316 137 HOH HOH . 
Q 7 HOH E 17 317 81 HOH HOH . 
R 7 HOH F 1 401 65 HOH HOH . 
R 7 HOH F 2 402 108 HOH HOH . 
R 7 HOH F 3 403 21 HOH HOH . 
R 7 HOH F 4 404 33 HOH HOH . 
R 7 HOH F 5 405 20 HOH HOH . 
R 7 HOH F 6 406 66 HOH HOH . 
R 7 HOH F 7 407 88 HOH HOH . 
R 7 HOH F 8 408 104 HOH HOH . 
R 7 HOH F 9 409 142 HOH HOH . 
R 7 HOH F 10 410 12 HOH HOH . 
R 7 HOH F 11 411 5 HOH HOH . 
R 7 HOH F 12 412 45 HOH HOH . 
R 7 HOH F 13 413 109 HOH HOH . 
R 7 HOH F 14 414 56 HOH HOH . 
R 7 HOH F 15 415 23 HOH HOH . 
R 7 HOH F 16 416 16 HOH HOH . 
R 7 HOH F 17 417 42 HOH HOH . 
R 7 HOH F 18 418 72 HOH HOH . 
R 7 HOH F 19 419 18 HOH HOH . 
R 7 HOH F 20 420 86 HOH HOH . 
R 7 HOH F 21 421 133 HOH HOH . 
R 7 HOH F 22 422 46 HOH HOH . 
R 7 HOH F 23 423 116 HOH HOH . 
R 7 HOH F 24 424 124 HOH HOH . 
R 7 HOH F 25 425 73 HOH HOH . 
R 7 HOH F 26 426 111 HOH HOH . 
R 7 HOH F 27 427 132 HOH HOH . 
R 7 HOH F 28 428 75 HOH HOH . 
R 7 HOH F 29 429 70 HOH HOH . 
R 7 HOH F 30 430 74 HOH HOH . 
R 7 HOH F 31 431 128 HOH HOH . 
R 7 HOH F 32 432 41 HOH HOH . 
S 7 HOH G 1 201 120 HOH HOH . 
S 7 HOH G 2 202 155 HOH HOH . 
S 7 HOH G 3 203 71 HOH HOH . 
S 7 HOH G 4 204 69 HOH HOH . 
S 7 HOH G 5 205 107 HOH HOH . 
S 7 HOH G 6 206 28 HOH HOH . 
S 7 HOH G 7 207 118 HOH HOH . 
S 7 HOH G 8 208 54 HOH HOH . 
S 7 HOH G 9 209 99 HOH HOH . 
S 7 HOH G 10 210 106 HOH HOH . 
S 7 HOH G 11 211 150 HOH HOH . 
T 7 HOH I 1 301 152 HOH HOH . 
T 7 HOH I 2 302 31 HOH HOH . 
T 7 HOH I 3 303 19 HOH HOH . 
T 7 HOH I 4 304 7 HOH HOH . 
T 7 HOH I 5 305 96 HOH HOH . 
T 7 HOH I 6 306 25 HOH HOH . 
T 7 HOH I 7 307 9 HOH HOH . 
T 7 HOH I 8 308 84 HOH HOH . 
T 7 HOH I 9 309 102 HOH HOH . 
T 7 HOH I 10 310 34 HOH HOH . 
T 7 HOH I 11 311 113 HOH HOH . 
T 7 HOH I 12 312 121 HOH HOH . 
T 7 HOH I 13 313 30 HOH HOH . 
T 7 HOH I 14 314 85 HOH HOH . 
T 7 HOH I 15 315 95 HOH HOH . 
T 7 HOH I 16 316 15 HOH HOH . 
T 7 HOH I 17 317 38 HOH HOH . 
T 7 HOH I 18 318 148 HOH HOH . 
T 7 HOH I 19 319 134 HOH HOH . 
T 7 HOH I 20 320 64 HOH HOH . 
T 7 HOH I 21 321 139 HOH HOH . 
T 7 HOH I 22 322 63 HOH HOH . 
T 7 HOH I 23 323 47 HOH HOH . 
T 7 HOH I 24 324 68 HOH HOH . 
U 7 HOH J 1 301 48 HOH HOH . 
U 7 HOH J 2 302 50 HOH HOH . 
U 7 HOH J 3 303 10 HOH HOH . 
U 7 HOH J 4 304 92 HOH HOH . 
U 7 HOH J 5 305 27 HOH HOH . 
U 7 HOH J 6 306 110 HOH HOH . 
U 7 HOH J 7 307 156 HOH HOH . 
U 7 HOH J 8 308 8 HOH HOH . 
U 7 HOH J 9 309 93 HOH HOH . 
U 7 HOH J 10 310 105 HOH HOH . 
U 7 HOH J 11 311 43 HOH HOH . 
U 7 HOH J 12 312 26 HOH HOH . 
U 7 HOH J 13 313 29 HOH HOH . 
U 7 HOH J 14 314 144 HOH HOH . 
U 7 HOH J 15 315 52 HOH HOH . 
U 7 HOH J 16 316 145 HOH HOH . 
U 7 HOH J 17 317 117 HOH HOH . 
U 7 HOH J 18 318 115 HOH HOH . 
U 7 HOH J 19 319 123 HOH HOH . 
U 7 HOH J 20 320 136 HOH HOH . 
U 7 HOH J 21 321 44 HOH HOH . 
U 7 HOH J 22 322 53 HOH HOH . 
U 7 HOH J 23 323 131 HOH HOH . 
U 7 HOH J 24 324 49 HOH HOH . 
U 7 HOH J 25 325 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 6 17.831 -62.997 10.263 1 63.69 ? C1 EDO 301 F 1 
HETATM 2 O O1 EDO . . . M 6 17.726 -62.179 11.417 1 63.29 ? O1 EDO 301 F 1 
HETATM 3 C C2 EDO . . . M 6 16.512 -63.429 9.735 1 63.9 ? C2 EDO 301 F 1 
HETATM 4 O O2 EDO . . . M 6 16.559 -64.655 9.022 1 66.82 ? O2 EDO 301 F 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           417 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#