data_6RT1
#
_model_server_result.job_id            aGPJEOx_1PvTI0iqBEuudA 
_model_server_result.datetime_utc      '2024-11-16 16:44:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rt1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6RT1 
#
_exptl.entry_id    6RT1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RT1 
_cell.length_a            78.634 
_cell.length_b            78.634 
_cell.length_c            36.993 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RT1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc5 J NA NA . A NA 209 1_555 K O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc6 J NA NA . A NA 209 1_555 K O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6RT1 
_atom_sites.fract_transf_matrix[1][1]    0.012717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027032 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 201 EDO EDO . 
C 2 EDO A 1 202 301 EDO EDO . 
D 2 EDO A 1 203 401 EDO EDO . 
E 3 CL A 1 204 1 CL CL . 
F 3 CL A 1 205 2 CL CL . 
G 3 CL A 1 206 3 CL CL . 
H 3 CL A 1 207 4 CL CL . 
I 3 CL A 1 208 5 CL CL . 
J 4 NA A 1 209 1 NA NA . 
K 5 HOH A 1 301 55 HOH HOH . 
K 5 HOH A 2 302 160 HOH HOH . 
K 5 HOH A 3 303 114 HOH HOH . 
K 5 HOH A 4 304 10 HOH HOH . 
K 5 HOH A 5 305 129 HOH HOH . 
K 5 HOH A 6 306 108 HOH HOH . 
K 5 HOH A 7 307 171 HOH HOH . 
K 5 HOH A 8 308 75 HOH HOH . 
K 5 HOH A 9 309 67 HOH HOH . 
K 5 HOH A 10 310 78 HOH HOH . 
K 5 HOH A 11 311 96 HOH HOH . 
K 5 HOH A 12 312 111 HOH HOH . 
K 5 HOH A 13 313 142 HOH HOH . 
K 5 HOH A 14 314 26 HOH HOH . 
K 5 HOH A 15 315 2 HOH HOH . 
K 5 HOH A 16 316 53 HOH HOH . 
K 5 HOH A 17 317 47 HOH HOH . 
K 5 HOH A 18 318 40 HOH HOH . 
K 5 HOH A 19 319 5 HOH HOH . 
K 5 HOH A 20 320 14 HOH HOH . 
K 5 HOH A 21 321 48 HOH HOH . 
K 5 HOH A 22 322 60 HOH HOH . 
K 5 HOH A 23 323 57 HOH HOH . 
K 5 HOH A 24 324 9 HOH HOH . 
K 5 HOH A 25 325 136 HOH HOH . 
K 5 HOH A 26 326 90 HOH HOH . 
K 5 HOH A 27 327 13 HOH HOH . 
K 5 HOH A 28 328 71 HOH HOH . 
K 5 HOH A 29 329 66 HOH HOH . 
K 5 HOH A 30 330 143 HOH HOH . 
K 5 HOH A 31 331 22 HOH HOH . 
K 5 HOH A 32 332 59 HOH HOH . 
K 5 HOH A 33 333 100 HOH HOH . 
K 5 HOH A 34 334 168 HOH HOH . 
K 5 HOH A 35 335 134 HOH HOH . 
K 5 HOH A 36 336 52 HOH HOH . 
K 5 HOH A 37 337 68 HOH HOH . 
K 5 HOH A 38 338 76 HOH HOH . 
K 5 HOH A 39 339 86 HOH HOH . 
K 5 HOH A 40 340 37 HOH HOH . 
K 5 HOH A 41 341 91 HOH HOH . 
K 5 HOH A 42 342 1 HOH HOH . 
K 5 HOH A 43 343 148 HOH HOH . 
K 5 HOH A 44 344 54 HOH HOH . 
K 5 HOH A 45 345 25 HOH HOH . 
K 5 HOH A 46 346 94 HOH HOH . 
K 5 HOH A 47 347 81 HOH HOH . 
K 5 HOH A 48 348 119 HOH HOH . 
K 5 HOH A 49 349 28 HOH HOH . 
K 5 HOH A 50 350 70 HOH HOH . 
K 5 HOH A 51 351 38 HOH HOH . 
K 5 HOH A 52 352 32 HOH HOH . 
K 5 HOH A 53 353 147 HOH HOH . 
K 5 HOH A 54 354 105 HOH HOH . 
K 5 HOH A 55 355 159 HOH HOH . 
K 5 HOH A 56 356 101 HOH HOH . 
K 5 HOH A 57 357 41 HOH HOH . 
K 5 HOH A 58 358 30 HOH HOH . 
K 5 HOH A 59 359 69 HOH HOH . 
K 5 HOH A 60 360 51 HOH HOH . 
K 5 HOH A 61 361 27 HOH HOH . 
K 5 HOH A 62 362 16 HOH HOH . 
K 5 HOH A 63 363 118 HOH HOH . 
K 5 HOH A 64 364 12 HOH HOH . 
K 5 HOH A 65 365 92 HOH HOH . 
K 5 HOH A 66 366 164 HOH HOH . 
K 5 HOH A 67 367 73 HOH HOH . 
K 5 HOH A 68 368 24 HOH HOH . 
K 5 HOH A 69 369 63 HOH HOH . 
K 5 HOH A 70 370 149 HOH HOH . 
K 5 HOH A 71 371 31 HOH HOH . 
K 5 HOH A 72 372 50 HOH HOH . 
K 5 HOH A 73 373 49 HOH HOH . 
K 5 HOH A 74 374 98 HOH HOH . 
K 5 HOH A 75 375 18 HOH HOH . 
K 5 HOH A 76 376 89 HOH HOH . 
K 5 HOH A 77 377 33 HOH HOH . 
K 5 HOH A 78 378 155 HOH HOH . 
K 5 HOH A 79 379 121 HOH HOH . 
K 5 HOH A 80 380 64 HOH HOH . 
K 5 HOH A 81 381 23 HOH HOH . 
K 5 HOH A 82 382 3 HOH HOH . 
K 5 HOH A 83 383 72 HOH HOH . 
K 5 HOH A 84 384 152 HOH HOH . 
K 5 HOH A 85 385 6 HOH HOH . 
K 5 HOH A 86 386 128 HOH HOH . 
K 5 HOH A 87 387 7 HOH HOH . 
K 5 HOH A 88 388 21 HOH HOH . 
K 5 HOH A 89 389 131 HOH HOH . 
K 5 HOH A 90 390 133 HOH HOH . 
K 5 HOH A 91 391 117 HOH HOH . 
K 5 HOH A 92 392 8 HOH HOH . 
K 5 HOH A 93 393 61 HOH HOH . 
K 5 HOH A 94 394 113 HOH HOH . 
K 5 HOH A 95 395 139 HOH HOH . 
K 5 HOH A 96 396 36 HOH HOH . 
K 5 HOH A 97 397 34 HOH HOH . 
K 5 HOH A 98 398 45 HOH HOH . 
K 5 HOH A 99 399 56 HOH HOH . 
K 5 HOH A 100 400 151 HOH HOH . 
K 5 HOH A 101 401 17 HOH HOH . 
K 5 HOH A 102 402 122 HOH HOH . 
K 5 HOH A 103 403 154 HOH HOH . 
K 5 HOH A 104 404 138 HOH HOH . 
K 5 HOH A 105 405 123 HOH HOH . 
K 5 HOH A 106 406 62 HOH HOH . 
K 5 HOH A 107 407 104 HOH HOH . 
K 5 HOH A 108 408 11 HOH HOH . 
K 5 HOH A 109 409 44 HOH HOH . 
K 5 HOH A 110 410 19 HOH HOH . 
K 5 HOH A 111 411 4 HOH HOH . 
K 5 HOH A 112 412 156 HOH HOH . 
K 5 HOH A 113 413 39 HOH HOH . 
K 5 HOH A 114 414 116 HOH HOH . 
K 5 HOH A 115 415 106 HOH HOH . 
K 5 HOH A 116 416 87 HOH HOH . 
K 5 HOH A 117 417 135 HOH HOH . 
K 5 HOH A 118 418 97 HOH HOH . 
K 5 HOH A 119 419 29 HOH HOH . 
K 5 HOH A 120 420 15 HOH HOH . 
K 5 HOH A 121 421 127 HOH HOH . 
K 5 HOH A 122 422 172 HOH HOH . 
K 5 HOH A 123 423 58 HOH HOH . 
K 5 HOH A 124 424 43 HOH HOH . 
K 5 HOH A 125 425 42 HOH HOH . 
K 5 HOH A 126 426 161 HOH HOH . 
K 5 HOH A 127 427 157 HOH HOH . 
K 5 HOH A 128 428 46 HOH HOH . 
K 5 HOH A 129 429 20 HOH HOH . 
K 5 HOH A 130 430 107 HOH HOH . 
K 5 HOH A 131 431 110 HOH HOH . 
K 5 HOH A 132 432 77 HOH HOH . 
K 5 HOH A 133 433 175 HOH HOH . 
K 5 HOH A 134 434 74 HOH HOH . 
K 5 HOH A 135 435 79 HOH HOH . 
K 5 HOH A 136 436 93 HOH HOH . 
K 5 HOH A 137 437 137 HOH HOH . 
K 5 HOH A 138 438 125 HOH HOH . 
K 5 HOH A 139 439 144 HOH HOH . 
K 5 HOH A 140 440 140 HOH HOH . 
K 5 HOH A 141 441 130 HOH HOH . 
K 5 HOH A 142 442 163 HOH HOH . 
K 5 HOH A 143 443 35 HOH HOH . 
K 5 HOH A 144 444 165 HOH HOH . 
K 5 HOH A 145 445 65 HOH HOH . 
K 5 HOH A 146 446 120 HOH HOH . 
K 5 HOH A 147 447 167 HOH HOH . 
K 5 HOH A 148 448 99 HOH HOH . 
K 5 HOH A 149 449 124 HOH HOH . 
K 5 HOH A 150 450 145 HOH HOH . 
K 5 HOH A 151 451 84 HOH HOH . 
K 5 HOH A 152 452 169 HOH HOH . 
K 5 HOH A 153 453 102 HOH HOH . 
K 5 HOH A 154 454 166 HOH HOH . 
K 5 HOH A 155 455 95 HOH HOH . 
K 5 HOH A 156 456 112 HOH HOH . 
K 5 HOH A 157 457 153 HOH HOH . 
K 5 HOH A 158 458 162 HOH HOH . 
K 5 HOH A 159 459 174 HOH HOH . 
K 5 HOH A 160 460 141 HOH HOH . 
K 5 HOH A 161 461 80 HOH HOH . 
K 5 HOH A 162 462 83 HOH HOH . 
K 5 HOH A 163 463 88 HOH HOH . 
K 5 HOH A 164 464 109 HOH HOH . 
K 5 HOH A 165 465 158 HOH HOH . 
K 5 HOH A 166 466 132 HOH HOH . 
K 5 HOH A 167 467 82 HOH HOH . 
K 5 HOH A 168 468 126 HOH HOH . 
K 5 HOH A 169 469 173 HOH HOH . 
K 5 HOH A 170 470 115 HOH HOH . 
K 5 HOH A 171 471 170 HOH HOH . 
K 5 HOH A 172 472 103 HOH HOH . 
K 5 HOH A 173 473 150 HOH HOH . 
K 5 HOH A 174 474 146 HOH HOH . 
K 5 HOH A 175 475 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 23.736 3.43 -5.662 1 23.17 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . B 2 24.075 4.762 -5.307 1 25.02 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . B 2 22.279 3.19 -5.626 1 20.62 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . B 2 21.556 4.001 -6.527 1 20.63 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#