data_6RTO # _model_server_result.job_id WMJJTI0ULfMt3xoUROsRhA _model_server_result.datetime_utc '2025-01-10 14:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6RTO # _exptl.entry_id 6RTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methylidenenaphthalen-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.573 _cell.angle_gamma 90 _cell.entry_id 6RTO _cell.length_a 142.271 _cell.length_b 101.977 _cell.length_c 58.472 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 284.542 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 154 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 159 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 159 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H8 O' _chem_comp.formula_weight 156.181 _chem_comp.id KJH _chem_comp.mon_nstd_flag . _chem_comp.name 1-methylidenenaphthalen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C08 KJH doub 264 n n C09 C08 KJH sing 265 n n C09 C05 KJH doub 266 n n C08 C04 KJH sing 267 n n C05 C03 KJH sing 268 n n C04 C12 KJH doub 269 n n C04 C02 KJH sing 270 n n C03 C02 KJH doub 271 n y C03 C07 KJH sing 272 n y C02 C06 KJH sing 273 n y C07 C11 KJH doub 274 n y C06 C10 KJH doub 275 n y C11 C10 KJH sing 276 n y C10 H101 KJH sing 277 n n C05 H051 KJH sing 278 n n C06 H061 KJH sing 279 n n C07 H071 KJH sing 280 n n C09 H091 KJH sing 281 n n C11 H111 KJH sing 282 n n C12 H122 KJH sing 283 n n C12 H2 KJH sing 284 n n # _atom_sites.entry_id 6RTO _atom_sites.fract_transf_matrix[1][1] 0.007029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002922 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1594 FAD FAD . C 3 KJH A 1 602 1 KJH LIG . D 4 PGE A 1 603 1 PGE PGE . E 5 HOH A 1 701 1194 HOH HOH . E 5 HOH A 2 702 625 HOH HOH . E 5 HOH A 3 703 133 HOH HOH . E 5 HOH A 4 704 44 HOH HOH . E 5 HOH A 5 705 294 HOH HOH . E 5 HOH A 6 706 1441 HOH HOH . E 5 HOH A 7 707 136 HOH HOH . E 5 HOH A 8 708 154 HOH HOH . E 5 HOH A 9 709 87 HOH HOH . E 5 HOH A 10 710 139 HOH HOH . E 5 HOH A 11 711 111 HOH HOH . E 5 HOH A 12 712 1266 HOH HOH . E 5 HOH A 13 713 37 HOH HOH . E 5 HOH A 14 714 11 HOH HOH . E 5 HOH A 15 715 2009 HOH HOH . E 5 HOH A 16 716 7 HOH HOH . E 5 HOH A 17 717 167 HOH HOH . E 5 HOH A 18 718 33 HOH HOH . E 5 HOH A 19 719 317 HOH HOH . E 5 HOH A 20 720 2004 HOH HOH . E 5 HOH A 21 721 530 HOH HOH . E 5 HOH A 22 722 59 HOH HOH . E 5 HOH A 23 723 1600 HOH HOH . E 5 HOH A 24 724 60 HOH HOH . E 5 HOH A 25 725 22 HOH HOH . E 5 HOH A 26 726 2051 HOH HOH . E 5 HOH A 27 727 65 HOH HOH . E 5 HOH A 28 728 24 HOH HOH . E 5 HOH A 29 729 99 HOH HOH . E 5 HOH A 30 730 13 HOH HOH . E 5 HOH A 31 731 2018 HOH HOH . E 5 HOH A 32 732 485 HOH HOH . E 5 HOH A 33 733 25 HOH HOH . E 5 HOH A 34 734 72 HOH HOH . E 5 HOH A 35 735 196 HOH HOH . E 5 HOH A 36 736 53 HOH HOH . E 5 HOH A 37 737 15 HOH HOH . E 5 HOH A 38 738 30 HOH HOH . E 5 HOH A 39 739 16 HOH HOH . E 5 HOH A 40 740 1444 HOH HOH . E 5 HOH A 41 741 158 HOH HOH . E 5 HOH A 42 742 2002 HOH HOH . E 5 HOH A 43 743 1190 HOH HOH . E 5 HOH A 44 744 93 HOH HOH . E 5 HOH A 45 745 79 HOH HOH . E 5 HOH A 46 746 561 HOH HOH . E 5 HOH A 47 747 1989 HOH HOH . E 5 HOH A 48 748 619 HOH HOH . E 5 HOH A 49 749 1049 HOH HOH . E 5 HOH A 50 750 140 HOH HOH . E 5 HOH A 51 751 135 HOH HOH . E 5 HOH A 52 752 3 HOH HOH . E 5 HOH A 53 753 226 HOH HOH . E 5 HOH A 54 754 2019 HOH HOH . E 5 HOH A 55 755 107 HOH HOH . E 5 HOH A 56 756 1719 HOH HOH . E 5 HOH A 57 757 126 HOH HOH . E 5 HOH A 58 758 163 HOH HOH . E 5 HOH A 59 759 41 HOH HOH . E 5 HOH A 60 760 89 HOH HOH . E 5 HOH A 61 761 2010 HOH HOH . E 5 HOH A 62 762 147 HOH HOH . E 5 HOH A 63 763 1809 HOH HOH . E 5 HOH A 64 764 199 HOH HOH . E 5 HOH A 65 765 96 HOH HOH . E 5 HOH A 66 766 155 HOH HOH . E 5 HOH A 67 767 1504 HOH HOH . E 5 HOH A 68 768 31 HOH HOH . E 5 HOH A 69 769 35 HOH HOH . E 5 HOH A 70 770 2006 HOH HOH . E 5 HOH A 71 771 180 HOH HOH . E 5 HOH A 72 772 21 HOH HOH . E 5 HOH A 73 773 50 HOH HOH . E 5 HOH A 74 774 27 HOH HOH . E 5 HOH A 75 775 1896 HOH HOH . E 5 HOH A 76 776 2072 HOH HOH . E 5 HOH A 77 777 195 HOH HOH . E 5 HOH A 78 778 75 HOH HOH . E 5 HOH A 79 779 1754 HOH HOH . E 5 HOH A 80 780 19 HOH HOH . E 5 HOH A 81 781 1413 HOH HOH . E 5 HOH A 82 782 605 HOH HOH . E 5 HOH A 83 783 217 HOH HOH . E 5 HOH A 84 784 46 HOH HOH . E 5 HOH A 85 785 29 HOH HOH . E 5 HOH A 86 786 118 HOH HOH . E 5 HOH A 87 787 1507 HOH HOH . E 5 HOH A 88 788 23 HOH HOH . E 5 HOH A 89 789 58 HOH HOH . E 5 HOH A 90 790 219 HOH HOH . E 5 HOH A 91 791 176 HOH HOH . E 5 HOH A 92 792 52 HOH HOH . E 5 HOH A 93 793 1751 HOH HOH . E 5 HOH A 94 794 2067 HOH HOH . E 5 HOH A 95 795 194 HOH HOH . E 5 HOH A 96 796 1278 HOH HOH . E 5 HOH A 97 797 76 HOH HOH . E 5 HOH A 98 798 102 HOH HOH . E 5 HOH A 99 799 505 HOH HOH . E 5 HOH A 100 800 88 HOH HOH . E 5 HOH A 101 801 173 HOH HOH . E 5 HOH A 102 802 66 HOH HOH . E 5 HOH A 103 803 1202 HOH HOH . E 5 HOH A 104 804 32 HOH HOH . E 5 HOH A 105 805 214 HOH HOH . E 5 HOH A 106 806 9 HOH HOH . E 5 HOH A 107 807 1335 HOH HOH . E 5 HOH A 108 808 618 HOH HOH . E 5 HOH A 109 809 1399 HOH HOH . E 5 HOH A 110 810 628 HOH HOH . E 5 HOH A 111 811 1856 HOH HOH . E 5 HOH A 112 812 1353 HOH HOH . E 5 HOH A 113 813 61 HOH HOH . E 5 HOH A 114 814 203 HOH HOH . E 5 HOH A 115 815 132 HOH HOH . E 5 HOH A 116 816 1411 HOH HOH . E 5 HOH A 117 817 120 HOH HOH . E 5 HOH A 118 818 5 HOH HOH . E 5 HOH A 119 819 70 HOH HOH . E 5 HOH A 120 820 771 HOH HOH . E 5 HOH A 121 821 178 HOH HOH . E 5 HOH A 122 822 1897 HOH HOH . E 5 HOH A 123 823 1310 HOH HOH . E 5 HOH A 124 824 8 HOH HOH . E 5 HOH A 125 825 2003 HOH HOH . E 5 HOH A 126 826 1350 HOH HOH . E 5 HOH A 127 827 48 HOH HOH . E 5 HOH A 128 828 289 HOH HOH . E 5 HOH A 129 829 77 HOH HOH . E 5 HOH A 130 830 64 HOH HOH . E 5 HOH A 131 831 635 HOH HOH . E 5 HOH A 132 832 200 HOH HOH . E 5 HOH A 133 833 1611 HOH HOH . E 5 HOH A 134 834 127 HOH HOH . E 5 HOH A 135 835 100 HOH HOH . E 5 HOH A 136 836 2056 HOH HOH . E 5 HOH A 137 837 2012 HOH HOH . E 5 HOH A 138 838 451 HOH HOH . E 5 HOH A 139 839 110 HOH HOH . E 5 HOH A 140 840 171 HOH HOH . E 5 HOH A 141 841 40 HOH HOH . E 5 HOH A 142 842 950 HOH HOH . E 5 HOH A 143 843 1028 HOH HOH . E 5 HOH A 144 844 517 HOH HOH . E 5 HOH A 145 845 2046 HOH HOH . E 5 HOH A 146 846 162 HOH HOH . E 5 HOH A 147 847 74 HOH HOH . E 5 HOH A 148 848 1833 HOH HOH . E 5 HOH A 149 849 175 HOH HOH . E 5 HOH A 150 850 510 HOH HOH . E 5 HOH A 151 851 1111 HOH HOH . E 5 HOH A 152 852 1174 HOH HOH . E 5 HOH A 153 853 2042 HOH HOH . E 5 HOH A 154 854 18 HOH HOH . E 5 HOH A 155 855 83 HOH HOH . E 5 HOH A 156 856 1511 HOH HOH . E 5 HOH A 157 857 1807 HOH HOH . E 5 HOH A 158 858 596 HOH HOH . E 5 HOH A 159 859 2014 HOH HOH . E 5 HOH A 160 860 230 HOH HOH . E 5 HOH A 161 861 1796 HOH HOH . E 5 HOH A 162 862 94 HOH HOH . E 5 HOH A 163 863 238 HOH HOH . E 5 HOH A 164 864 252 HOH HOH . E 5 HOH A 165 865 56 HOH HOH . E 5 HOH A 166 866 2062 HOH HOH . E 5 HOH A 167 867 78 HOH HOH . E 5 HOH A 168 868 1806 HOH HOH . E 5 HOH A 169 869 131 HOH HOH . E 5 HOH A 170 870 164 HOH HOH . E 5 HOH A 171 871 216 HOH HOH . E 5 HOH A 172 872 396 HOH HOH . E 5 HOH A 173 873 232 HOH HOH . E 5 HOH A 174 874 732 HOH HOH . E 5 HOH A 175 875 125 HOH HOH . E 5 HOH A 176 876 108 HOH HOH . E 5 HOH A 177 877 142 HOH HOH . E 5 HOH A 178 878 764 HOH HOH . E 5 HOH A 179 879 109 HOH HOH . E 5 HOH A 180 880 364 HOH HOH . E 5 HOH A 181 881 312 HOH HOH . E 5 HOH A 182 882 353 HOH HOH . E 5 HOH A 183 883 1604 HOH HOH . E 5 HOH A 184 884 2050 HOH HOH . E 5 HOH A 185 885 1594 HOH HOH . E 5 HOH A 186 886 2073 HOH HOH . E 5 HOH A 187 887 1614 HOH HOH . E 5 HOH A 188 888 187 HOH HOH . E 5 HOH A 189 889 84 HOH HOH . E 5 HOH A 190 890 161 HOH HOH . E 5 HOH A 191 891 166 HOH HOH . E 5 HOH A 192 892 1449 HOH HOH . E 5 HOH A 193 893 543 HOH HOH . E 5 HOH A 194 894 1750 HOH HOH . E 5 HOH A 195 895 231 HOH HOH . E 5 HOH A 196 896 910 HOH HOH . E 5 HOH A 197 897 1205 HOH HOH . E 5 HOH A 198 898 1810 HOH HOH . E 5 HOH A 199 899 643 HOH HOH . E 5 HOH A 200 900 660 HOH HOH . E 5 HOH A 201 901 190 HOH HOH . E 5 HOH A 202 902 342 HOH HOH . E 5 HOH A 203 903 1517 HOH HOH . E 5 HOH A 204 904 837 HOH HOH . E 5 HOH A 205 905 123 HOH HOH . E 5 HOH A 206 906 186 HOH HOH . E 5 HOH A 207 907 2077 HOH HOH . E 5 HOH A 208 908 1895 HOH HOH . E 5 HOH A 209 909 2001 HOH HOH . E 5 HOH A 210 910 2075 HOH HOH . E 5 HOH A 211 911 122 HOH HOH . E 5 HOH A 212 912 1701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KJH . . . C 3 138.914 0.015 27.934 1 60.51 ? C10 KJH 602 A 1 HETATM 2 C C02 KJH . . . C 3 137.307 -0.268 26.174 1 63.91 ? C02 KJH 602 A 1 HETATM 3 C C03 KJH . . . C 3 137.82 -1.528 25.91 1 57.24 ? C03 KJH 602 A 1 HETATM 4 C C04 KJH . . . C 3 136.248 0.219 25.426 1 66.58 ? C04 KJH 602 A 1 HETATM 5 C C05 KJH . . . C 3 137.274 -2.3 24.899 1 53.17 ? C05 KJH 602 A 1 HETATM 6 C C06 KJH . . . C 3 137.855 0.503 27.186 1 60.4 ? C06 KJH 602 A 1 HETATM 7 C C07 KJH . . . C 3 138.879 -2.015 26.658 1 57.81 ? C07 KJH 602 A 1 HETATM 8 C C08 KJH . . . C 3 135.702 -0.554 24.414 1 62.18 ? C08 KJH 602 A 1 HETATM 9 C C09 KJH . . . C 3 136.215 -1.813 24.151 1 53.4 ? C09 KJH 602 A 1 HETATM 10 C C11 KJH . . . C 3 139.426 -1.244 27.67 1 63.49 ? C11 KJH 602 A 1 HETATM 11 C C12 KJH . . . C 3 135.76 1.416 25.676 1 61.25 ? C12 KJH 602 A 1 HETATM 12 O O01 KJH . . . C 3 134.795 -0.139 23.773 1 64.64 ? O01 KJH 602 A 1 HETATM 13 H H101 KJH . . . C 3 139.281 0.533 28.613 1 72.58 ? H101 KJH 602 A 1 HETATM 14 H H051 KJH . . . C 3 137.618 -3.146 24.722 1 63.78 ? H051 KJH 602 A 1 HETATM 15 H H061 KJH . . . C 3 137.513 1.349 27.365 1 72.45 ? H061 KJH 602 A 1 HETATM 16 H H071 KJH . . . C 3 139.223 -2.861 26.48 1 69.33 ? H071 KJH 602 A 1 HETATM 17 H H091 KJH . . . C 3 135.848 -2.332 23.471 1 64.04 ? H091 KJH 602 A 1 HETATM 18 H H111 KJH . . . C 3 140.137 -1.572 28.172 1 76.16 ? H111 KJH 602 A 1 HETATM 19 H H122 KJH . . . C 3 136.078 2.153 25.207 1 73.46 ? H122 KJH 602 A 1 HETATM 20 H H2 KJH . . . C 3 135.177 1.539 26.39 1 73.46 ? H2 KJH 602 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #