data_6RTO # _model_server_result.job_id jf3JhtVaoHZxiV5rIWg1ZQ _model_server_result.datetime_utc '2025-01-10 14:47:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6RTO # _exptl.entry_id 6RTO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.573 _cell.angle_gamma 90 _cell.entry_id 6RTO _cell.length_a 142.271 _cell.length_b 101.977 _cell.length_c 58.472 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 284.542 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 154 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 154 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 159 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 159 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 349 n n C1 C2 PGE sing 350 n n C1 H1 PGE sing 351 n n C1 H12 PGE sing 352 n n O1 HO1 PGE sing 353 n n C2 O2 PGE sing 354 n n C2 H2 PGE sing 355 n n C2 H22 PGE sing 356 n n O2 C3 PGE sing 357 n n C3 C4 PGE sing 358 n n C3 H3 PGE sing 359 n n C3 H32 PGE sing 360 n n C4 O3 PGE sing 361 n n C4 H4 PGE sing 362 n n C4 H42 PGE sing 363 n n O4 C6 PGE sing 364 n n O4 HO4 PGE sing 365 n n C6 C5 PGE sing 366 n n C6 H6 PGE sing 367 n n C6 H62 PGE sing 368 n n C5 O3 PGE sing 369 n n C5 H5 PGE sing 370 n n C5 H52 PGE sing 371 n n # _atom_sites.entry_id 6RTO _atom_sites.fract_transf_matrix[1][1] 0.007029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002922 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1594 FAD FAD . C 3 KJH A 1 602 1 KJH LIG . D 4 PGE A 1 603 1 PGE PGE . E 5 HOH A 1 701 1194 HOH HOH . E 5 HOH A 2 702 625 HOH HOH . E 5 HOH A 3 703 133 HOH HOH . E 5 HOH A 4 704 44 HOH HOH . E 5 HOH A 5 705 294 HOH HOH . E 5 HOH A 6 706 1441 HOH HOH . E 5 HOH A 7 707 136 HOH HOH . E 5 HOH A 8 708 154 HOH HOH . E 5 HOH A 9 709 87 HOH HOH . E 5 HOH A 10 710 139 HOH HOH . E 5 HOH A 11 711 111 HOH HOH . E 5 HOH A 12 712 1266 HOH HOH . E 5 HOH A 13 713 37 HOH HOH . E 5 HOH A 14 714 11 HOH HOH . E 5 HOH A 15 715 2009 HOH HOH . E 5 HOH A 16 716 7 HOH HOH . E 5 HOH A 17 717 167 HOH HOH . E 5 HOH A 18 718 33 HOH HOH . E 5 HOH A 19 719 317 HOH HOH . E 5 HOH A 20 720 2004 HOH HOH . E 5 HOH A 21 721 530 HOH HOH . E 5 HOH A 22 722 59 HOH HOH . E 5 HOH A 23 723 1600 HOH HOH . E 5 HOH A 24 724 60 HOH HOH . E 5 HOH A 25 725 22 HOH HOH . E 5 HOH A 26 726 2051 HOH HOH . E 5 HOH A 27 727 65 HOH HOH . E 5 HOH A 28 728 24 HOH HOH . E 5 HOH A 29 729 99 HOH HOH . E 5 HOH A 30 730 13 HOH HOH . E 5 HOH A 31 731 2018 HOH HOH . E 5 HOH A 32 732 485 HOH HOH . E 5 HOH A 33 733 25 HOH HOH . E 5 HOH A 34 734 72 HOH HOH . E 5 HOH A 35 735 196 HOH HOH . E 5 HOH A 36 736 53 HOH HOH . E 5 HOH A 37 737 15 HOH HOH . E 5 HOH A 38 738 30 HOH HOH . E 5 HOH A 39 739 16 HOH HOH . E 5 HOH A 40 740 1444 HOH HOH . E 5 HOH A 41 741 158 HOH HOH . E 5 HOH A 42 742 2002 HOH HOH . E 5 HOH A 43 743 1190 HOH HOH . E 5 HOH A 44 744 93 HOH HOH . E 5 HOH A 45 745 79 HOH HOH . E 5 HOH A 46 746 561 HOH HOH . E 5 HOH A 47 747 1989 HOH HOH . E 5 HOH A 48 748 619 HOH HOH . E 5 HOH A 49 749 1049 HOH HOH . E 5 HOH A 50 750 140 HOH HOH . E 5 HOH A 51 751 135 HOH HOH . E 5 HOH A 52 752 3 HOH HOH . E 5 HOH A 53 753 226 HOH HOH . E 5 HOH A 54 754 2019 HOH HOH . E 5 HOH A 55 755 107 HOH HOH . E 5 HOH A 56 756 1719 HOH HOH . E 5 HOH A 57 757 126 HOH HOH . E 5 HOH A 58 758 163 HOH HOH . E 5 HOH A 59 759 41 HOH HOH . E 5 HOH A 60 760 89 HOH HOH . E 5 HOH A 61 761 2010 HOH HOH . E 5 HOH A 62 762 147 HOH HOH . E 5 HOH A 63 763 1809 HOH HOH . E 5 HOH A 64 764 199 HOH HOH . E 5 HOH A 65 765 96 HOH HOH . E 5 HOH A 66 766 155 HOH HOH . E 5 HOH A 67 767 1504 HOH HOH . E 5 HOH A 68 768 31 HOH HOH . E 5 HOH A 69 769 35 HOH HOH . E 5 HOH A 70 770 2006 HOH HOH . E 5 HOH A 71 771 180 HOH HOH . E 5 HOH A 72 772 21 HOH HOH . E 5 HOH A 73 773 50 HOH HOH . E 5 HOH A 74 774 27 HOH HOH . E 5 HOH A 75 775 1896 HOH HOH . E 5 HOH A 76 776 2072 HOH HOH . E 5 HOH A 77 777 195 HOH HOH . E 5 HOH A 78 778 75 HOH HOH . E 5 HOH A 79 779 1754 HOH HOH . E 5 HOH A 80 780 19 HOH HOH . E 5 HOH A 81 781 1413 HOH HOH . E 5 HOH A 82 782 605 HOH HOH . E 5 HOH A 83 783 217 HOH HOH . E 5 HOH A 84 784 46 HOH HOH . E 5 HOH A 85 785 29 HOH HOH . E 5 HOH A 86 786 118 HOH HOH . E 5 HOH A 87 787 1507 HOH HOH . E 5 HOH A 88 788 23 HOH HOH . E 5 HOH A 89 789 58 HOH HOH . E 5 HOH A 90 790 219 HOH HOH . E 5 HOH A 91 791 176 HOH HOH . E 5 HOH A 92 792 52 HOH HOH . E 5 HOH A 93 793 1751 HOH HOH . E 5 HOH A 94 794 2067 HOH HOH . E 5 HOH A 95 795 194 HOH HOH . E 5 HOH A 96 796 1278 HOH HOH . E 5 HOH A 97 797 76 HOH HOH . E 5 HOH A 98 798 102 HOH HOH . E 5 HOH A 99 799 505 HOH HOH . E 5 HOH A 100 800 88 HOH HOH . E 5 HOH A 101 801 173 HOH HOH . E 5 HOH A 102 802 66 HOH HOH . E 5 HOH A 103 803 1202 HOH HOH . E 5 HOH A 104 804 32 HOH HOH . E 5 HOH A 105 805 214 HOH HOH . E 5 HOH A 106 806 9 HOH HOH . E 5 HOH A 107 807 1335 HOH HOH . E 5 HOH A 108 808 618 HOH HOH . E 5 HOH A 109 809 1399 HOH HOH . E 5 HOH A 110 810 628 HOH HOH . E 5 HOH A 111 811 1856 HOH HOH . E 5 HOH A 112 812 1353 HOH HOH . E 5 HOH A 113 813 61 HOH HOH . E 5 HOH A 114 814 203 HOH HOH . E 5 HOH A 115 815 132 HOH HOH . E 5 HOH A 116 816 1411 HOH HOH . E 5 HOH A 117 817 120 HOH HOH . E 5 HOH A 118 818 5 HOH HOH . E 5 HOH A 119 819 70 HOH HOH . E 5 HOH A 120 820 771 HOH HOH . E 5 HOH A 121 821 178 HOH HOH . E 5 HOH A 122 822 1897 HOH HOH . E 5 HOH A 123 823 1310 HOH HOH . E 5 HOH A 124 824 8 HOH HOH . E 5 HOH A 125 825 2003 HOH HOH . E 5 HOH A 126 826 1350 HOH HOH . E 5 HOH A 127 827 48 HOH HOH . E 5 HOH A 128 828 289 HOH HOH . E 5 HOH A 129 829 77 HOH HOH . E 5 HOH A 130 830 64 HOH HOH . E 5 HOH A 131 831 635 HOH HOH . E 5 HOH A 132 832 200 HOH HOH . E 5 HOH A 133 833 1611 HOH HOH . E 5 HOH A 134 834 127 HOH HOH . E 5 HOH A 135 835 100 HOH HOH . E 5 HOH A 136 836 2056 HOH HOH . E 5 HOH A 137 837 2012 HOH HOH . E 5 HOH A 138 838 451 HOH HOH . E 5 HOH A 139 839 110 HOH HOH . E 5 HOH A 140 840 171 HOH HOH . E 5 HOH A 141 841 40 HOH HOH . E 5 HOH A 142 842 950 HOH HOH . E 5 HOH A 143 843 1028 HOH HOH . E 5 HOH A 144 844 517 HOH HOH . E 5 HOH A 145 845 2046 HOH HOH . E 5 HOH A 146 846 162 HOH HOH . E 5 HOH A 147 847 74 HOH HOH . E 5 HOH A 148 848 1833 HOH HOH . E 5 HOH A 149 849 175 HOH HOH . E 5 HOH A 150 850 510 HOH HOH . E 5 HOH A 151 851 1111 HOH HOH . E 5 HOH A 152 852 1174 HOH HOH . E 5 HOH A 153 853 2042 HOH HOH . E 5 HOH A 154 854 18 HOH HOH . E 5 HOH A 155 855 83 HOH HOH . E 5 HOH A 156 856 1511 HOH HOH . E 5 HOH A 157 857 1807 HOH HOH . E 5 HOH A 158 858 596 HOH HOH . E 5 HOH A 159 859 2014 HOH HOH . E 5 HOH A 160 860 230 HOH HOH . E 5 HOH A 161 861 1796 HOH HOH . E 5 HOH A 162 862 94 HOH HOH . E 5 HOH A 163 863 238 HOH HOH . E 5 HOH A 164 864 252 HOH HOH . E 5 HOH A 165 865 56 HOH HOH . E 5 HOH A 166 866 2062 HOH HOH . E 5 HOH A 167 867 78 HOH HOH . E 5 HOH A 168 868 1806 HOH HOH . E 5 HOH A 169 869 131 HOH HOH . E 5 HOH A 170 870 164 HOH HOH . E 5 HOH A 171 871 216 HOH HOH . E 5 HOH A 172 872 396 HOH HOH . E 5 HOH A 173 873 232 HOH HOH . E 5 HOH A 174 874 732 HOH HOH . E 5 HOH A 175 875 125 HOH HOH . E 5 HOH A 176 876 108 HOH HOH . E 5 HOH A 177 877 142 HOH HOH . E 5 HOH A 178 878 764 HOH HOH . E 5 HOH A 179 879 109 HOH HOH . E 5 HOH A 180 880 364 HOH HOH . E 5 HOH A 181 881 312 HOH HOH . E 5 HOH A 182 882 353 HOH HOH . E 5 HOH A 183 883 1604 HOH HOH . E 5 HOH A 184 884 2050 HOH HOH . E 5 HOH A 185 885 1594 HOH HOH . E 5 HOH A 186 886 2073 HOH HOH . E 5 HOH A 187 887 1614 HOH HOH . E 5 HOH A 188 888 187 HOH HOH . E 5 HOH A 189 889 84 HOH HOH . E 5 HOH A 190 890 161 HOH HOH . E 5 HOH A 191 891 166 HOH HOH . E 5 HOH A 192 892 1449 HOH HOH . E 5 HOH A 193 893 543 HOH HOH . E 5 HOH A 194 894 1750 HOH HOH . E 5 HOH A 195 895 231 HOH HOH . E 5 HOH A 196 896 910 HOH HOH . E 5 HOH A 197 897 1205 HOH HOH . E 5 HOH A 198 898 1810 HOH HOH . E 5 HOH A 199 899 643 HOH HOH . E 5 HOH A 200 900 660 HOH HOH . E 5 HOH A 201 901 190 HOH HOH . E 5 HOH A 202 902 342 HOH HOH . E 5 HOH A 203 903 1517 HOH HOH . E 5 HOH A 204 904 837 HOH HOH . E 5 HOH A 205 905 123 HOH HOH . E 5 HOH A 206 906 186 HOH HOH . E 5 HOH A 207 907 2077 HOH HOH . E 5 HOH A 208 908 1895 HOH HOH . E 5 HOH A 209 909 2001 HOH HOH . E 5 HOH A 210 910 2075 HOH HOH . E 5 HOH A 211 911 122 HOH HOH . E 5 HOH A 212 912 1701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 155.679 2.11 32.276 1 55.34 ? C1 PGE 603 A 1 HETATM 2 O O1 PGE . . . D 4 156.703 2.548 33.16 1 55.72 ? O1 PGE 603 A 1 HETATM 3 C C2 PGE . . . D 4 154.314 2.035 32.963 1 51.86 ? C2 PGE 603 A 1 HETATM 4 O O2 PGE . . . D 4 154.007 0.725 33.364 1 48.07 ? O2 PGE 603 A 1 HETATM 5 C C3 PGE . . . D 4 152.625 0.423 33.31 1 50.51 ? C3 PGE 603 A 1 HETATM 6 C C4 PGE . . . D 4 152.308 -1.021 33.713 1 49.66 ? C4 PGE 603 A 1 HETATM 7 O O4 PGE . . . D 4 147.797 -2.273 32.482 1 53.76 ? O4 PGE 603 A 1 HETATM 8 C C6 PGE . . . D 4 148.877 -1.408 31.987 1 56.06 ? C6 PGE 603 A 1 HETATM 9 C C5 PGE . . . D 4 149.891 -0.884 33.028 1 54.95 ? C5 PGE 603 A 1 HETATM 10 O O3 PGE . . . D 4 151.201 -1.526 32.972 1 56.25 ? O3 PGE 603 A 1 HETATM 11 H H1 PGE . . . D 4 155.575 2.794 31.42 1 66.37 ? H1 PGE 603 A 1 HETATM 12 H H12 PGE . . . D 4 155.899 1.107 31.881 1 66.37 ? H12 PGE 603 A 1 HETATM 13 H HO1 PGE . . . D 4 157.519 2.665 32.641 1 66.83 ? HO1 PGE 603 A 1 HETATM 14 H H2 PGE . . . D 4 154.324 2.709 33.837 1 62.2 ? H2 PGE 603 A 1 HETATM 15 H H22 PGE . . . D 4 153.547 2.41 32.262 1 62.2 ? H22 PGE 603 A 1 HETATM 16 H H3 PGE . . . D 4 152.066 1.094 33.984 1 60.57 ? H3 PGE 603 A 1 HETATM 17 H H32 PGE . . . D 4 152.244 0.581 32.287 1 60.57 ? H32 PGE 603 A 1 HETATM 18 H H4 PGE . . . D 4 153.204 -1.642 33.536 1 59.56 ? H4 PGE 603 A 1 HETATM 19 H H42 PGE . . . D 4 152.09 -1.046 34.795 1 59.56 ? H42 PGE 603 A 1 HETATM 20 H HO4 PGE . . . D 4 147.363 -2.684 31.722 1 64.48 ? HO4 PGE 603 A 1 HETATM 21 H H6 PGE . . . D 4 149.471 -1.948 31.231 1 67.24 ? H6 PGE 603 A 1 HETATM 22 H H62 PGE . . . D 4 148.448 -0.514 31.505 1 67.24 ? H62 PGE 603 A 1 HETATM 23 H H5 PGE . . . D 4 149.445 -1.03 34.026 1 65.9 ? H5 PGE 603 A 1 HETATM 24 H H52 PGE . . . D 4 149.999 0.202 32.866 1 65.9 ? H52 PGE 603 A 1 # _model_server_stats.io_time_ms 144 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #