data_6RTY
#
_model_server_result.job_id            5iHoJoVP75-GN2CooMY0wA 
_model_server_result.datetime_utc      '2025-08-14 20:28:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rty 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    6RTY 
#
_exptl.entry_id    6RTY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RTY 
_cell.length_a            47.718 
_cell.length_b            65.873 
_cell.length_c            150.538 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RTY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 68 A CYS 203 1_555 A SG CYS 91 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
disulf ? disulf2 A SG CYS 99 A CYS 234 1_555 A SG CYS 192 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
disulf ? disulf3 A SG CYS 161 A CYS 296 1_555 A SG CYS 169 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
covale ? covale1 A ND2 ASN 177 A ASN 312 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 A ND2 ASN 214 A ASN 349 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale3 A ND2 ASN 279 A ASN 414 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6RTY 
_atom_sites.fract_transf_matrix[1][1]    0.020956 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 501 1 NAG NAG . 
D 3 NAG A 1 502 2 NAG NAG . 
E 3 NAG A 1 503 3 NAG NAG . 
F 4 HOH A 1 601 47 HOH HOH . 
F 4 HOH A 2 602 45 HOH HOH . 
F 4 HOH A 3 603 36 HOH HOH . 
F 4 HOH A 4 604 41 HOH HOH . 
F 4 HOH A 5 605 12 HOH HOH . 
F 4 HOH A 6 606 59 HOH HOH . 
F 4 HOH A 7 607 64 HOH HOH . 
F 4 HOH A 8 608 51 HOH HOH . 
F 4 HOH A 9 609 67 HOH HOH . 
F 4 HOH A 10 610 34 HOH HOH . 
F 4 HOH A 11 611 24 HOH HOH . 
F 4 HOH A 12 612 63 HOH HOH . 
F 4 HOH A 13 613 9 HOH HOH . 
F 4 HOH A 14 614 72 HOH HOH . 
F 4 HOH A 15 615 35 HOH HOH . 
F 4 HOH A 16 616 68 HOH HOH . 
F 4 HOH A 17 617 13 HOH HOH . 
F 4 HOH A 18 618 26 HOH HOH . 
F 4 HOH A 19 619 16 HOH HOH . 
F 4 HOH A 20 620 70 HOH HOH . 
F 4 HOH A 21 621 46 HOH HOH . 
F 4 HOH A 22 622 21 HOH HOH . 
F 4 HOH A 23 623 8 HOH HOH . 
F 4 HOH A 24 624 27 HOH HOH . 
F 4 HOH A 25 625 2 HOH HOH . 
F 4 HOH A 26 626 52 HOH HOH . 
F 4 HOH A 27 627 6 HOH HOH . 
F 4 HOH A 28 628 18 HOH HOH . 
F 4 HOH A 29 629 66 HOH HOH . 
F 4 HOH A 30 630 30 HOH HOH . 
F 4 HOH A 31 631 38 HOH HOH . 
F 4 HOH A 32 632 3 HOH HOH . 
F 4 HOH A 33 633 73 HOH HOH . 
F 4 HOH A 34 634 11 HOH HOH . 
F 4 HOH A 35 635 80 HOH HOH . 
F 4 HOH A 36 636 19 HOH HOH . 
F 4 HOH A 37 637 32 HOH HOH . 
F 4 HOH A 38 638 57 HOH HOH . 
F 4 HOH A 39 639 44 HOH HOH . 
F 4 HOH A 40 640 77 HOH HOH . 
F 4 HOH A 41 641 37 HOH HOH . 
F 4 HOH A 42 642 20 HOH HOH . 
F 4 HOH A 43 643 1 HOH HOH . 
F 4 HOH A 44 644 48 HOH HOH . 
F 4 HOH A 45 645 22 HOH HOH . 
F 4 HOH A 46 646 4 HOH HOH . 
F 4 HOH A 47 647 78 HOH HOH . 
F 4 HOH A 48 648 40 HOH HOH . 
F 4 HOH A 49 649 50 HOH HOH . 
F 4 HOH A 50 650 5 HOH HOH . 
F 4 HOH A 51 651 10 HOH HOH . 
F 4 HOH A 52 652 29 HOH HOH . 
F 4 HOH A 53 653 17 HOH HOH . 
F 4 HOH A 54 654 14 HOH HOH . 
F 4 HOH A 55 655 65 HOH HOH . 
F 4 HOH A 56 656 7 HOH HOH . 
F 4 HOH A 57 657 28 HOH HOH . 
F 4 HOH A 58 658 23 HOH HOH . 
F 4 HOH A 59 659 31 HOH HOH . 
F 4 HOH A 60 660 53 HOH HOH . 
F 4 HOH A 61 661 83 HOH HOH . 
F 4 HOH A 62 662 69 HOH HOH . 
F 4 HOH A 63 663 81 HOH HOH . 
F 4 HOH A 64 664 58 HOH HOH . 
F 4 HOH A 65 665 76 HOH HOH . 
F 4 HOH A 66 666 33 HOH HOH . 
F 4 HOH A 67 667 75 HOH HOH . 
F 4 HOH A 68 668 25 HOH HOH . 
F 4 HOH A 69 669 54 HOH HOH . 
F 4 HOH A 70 670 56 HOH HOH . 
F 4 HOH A 71 671 84 HOH HOH . 
F 4 HOH A 72 672 39 HOH HOH . 
F 4 HOH A 73 673 49 HOH HOH . 
F 4 HOH A 74 674 74 HOH HOH . 
F 4 HOH A 75 675 82 HOH HOH . 
G 4 HOH B 1 201 60 HOH HOH . 
G 4 HOH B 2 202 55 HOH HOH . 
G 4 HOH B 3 203 79 HOH HOH . 
G 4 HOH B 4 204 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 9.824 23.145 -12.169 1 124.29 ? C1 NAG 503 A 1 
HETATM 2 C C2 NAG . . . E 3 10.23 23.917 -13.419 1 127.72 ? C2 NAG 503 A 1 
HETATM 3 C C3 NAG . . . E 3 9.839 25.394 -13.341 1 130.39 ? C3 NAG 503 A 1 
HETATM 4 C C4 NAG . . . E 3 8.637 25.721 -12.438 1 130.07 ? C4 NAG 503 A 1 
HETATM 5 C C5 NAG . . . E 3 8.505 24.816 -11.215 1 126.08 ? C5 NAG 503 A 1 
HETATM 6 C C6 NAG . . . E 3 7.208 25.078 -10.463 1 124.15 ? C6 NAG 503 A 1 
HETATM 7 C C7 NAG . . . E 3 12.27 22.936 -14.459 1 130.86 ? C7 NAG 503 A 1 
HETATM 8 C C8 NAG . . . E 3 13.771 22.859 -14.378 1 128.55 ? C8 NAG 503 A 1 
HETATM 9 N N2 NAG . . . E 3 11.677 23.773 -13.59 1 129.91 ? N2 NAG 503 A 1 
HETATM 10 O O3 NAG . . . E 3 9.542 25.817 -14.678 1 127.32 ? O3 NAG 503 A 1 
HETATM 11 O O4 NAG . . . E 3 8.745 27.077 -11.981 1 122.58 ? O4 NAG 503 A 1 
HETATM 12 O O5 NAG . . . E 3 8.538 23.451 -11.63 1 128.69 ? O5 NAG 503 A 1 
HETATM 13 O O6 NAG . . . E 3 7.188 24.251 -9.299 1 132.4 ? O6 NAG 503 A 1 
HETATM 14 O O7 NAG . . . E 3 11.659 22.249 -15.261 1 122.15 ? O7 NAG 503 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#