data_6RUL # _model_server_result.job_id gxjRgzB_8Fa76vNfv-oaUA _model_server_result.datetime_utc '2024-11-08 20:47:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RUL # _exptl.entry_id 6RUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIMETHOPRIM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RUL _cell.length_a 86.61 _cell.length_b 86.61 _cell.length_c 73.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 97 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H18 N4 O3' _chem_comp.formula_weight 290.318 _chem_comp.id TOP _chem_comp.mon_nstd_flag . _chem_comp.name TRIMETHOPRIM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 TOP doub 411 n y C1 C8 TOP sing 412 n y C1 H1 TOP sing 413 n n N2 C3 TOP sing 414 n y C3 N4 TOP sing 415 n n C3 N5 TOP doub 416 n y N4 HN41 TOP sing 417 n n N4 HN42 TOP sing 418 n n N5 C6 TOP sing 419 n y C6 N7 TOP sing 420 n n C6 C8 TOP doub 421 n y N7 HN71 TOP sing 422 n n N7 HN72 TOP sing 423 n n C8 C9 TOP sing 424 n n C9 C10 TOP sing 425 n n C9 H91 TOP sing 426 n n C9 H92 TOP sing 427 n n C10 C11 TOP doub 428 n y C10 C21 TOP sing 429 n y C11 C12 TOP sing 430 n y C11 H11 TOP sing 431 n n C12 O13 TOP sing 432 n n C12 C15 TOP doub 433 n y O13 C14 TOP sing 434 n n C14 H141 TOP sing 435 n n C14 H142 TOP sing 436 n n C14 H143 TOP sing 437 n n C15 O16 TOP sing 438 n n C15 C18 TOP sing 439 n y O16 C17 TOP sing 440 n n C17 H171 TOP sing 441 n n C17 H172 TOP sing 442 n n C17 H173 TOP sing 443 n n C18 O19 TOP sing 444 n n C18 C21 TOP doub 445 n y O19 C20 TOP sing 446 n n C20 H201 TOP sing 447 n n C20 H202 TOP sing 448 n n C20 H203 TOP sing 449 n n C21 H21 TOP sing 450 n n # _atom_sites.entry_id 6RUL _atom_sites.fract_transf_matrix[1][1] 0.011546 _atom_sites.fract_transf_matrix[1][2] 0.006666 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP A 1 301 1 TOP TOP . C 3 NDP A 1 302 2 NDP NDP . D 4 PGE A 1 303 11 PGE PGE . E 5 HOH A 1 401 31 HOH HOH . E 5 HOH A 2 402 47 HOH HOH . E 5 HOH A 3 403 46 HOH HOH . E 5 HOH A 4 404 26 HOH HOH . E 5 HOH A 5 405 38 HOH HOH . E 5 HOH A 6 406 18 HOH HOH . E 5 HOH A 7 407 35 HOH HOH . E 5 HOH A 8 408 72 HOH HOH . E 5 HOH A 9 409 37 HOH HOH . E 5 HOH A 10 410 9 HOH HOH . E 5 HOH A 11 411 2 HOH HOH . E 5 HOH A 12 412 3 HOH HOH . E 5 HOH A 13 413 73 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 8 HOH HOH . E 5 HOH A 16 416 7 HOH HOH . E 5 HOH A 17 417 56 HOH HOH . E 5 HOH A 18 418 28 HOH HOH . E 5 HOH A 19 419 25 HOH HOH . E 5 HOH A 20 420 59 HOH HOH . E 5 HOH A 21 421 75 HOH HOH . E 5 HOH A 22 422 41 HOH HOH . E 5 HOH A 23 423 14 HOH HOH . E 5 HOH A 24 424 4 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 44 HOH HOH . E 5 HOH A 27 427 5 HOH HOH . E 5 HOH A 28 428 19 HOH HOH . E 5 HOH A 29 429 45 HOH HOH . E 5 HOH A 30 430 12 HOH HOH . E 5 HOH A 31 431 6 HOH HOH . E 5 HOH A 32 432 61 HOH HOH . E 5 HOH A 33 433 24 HOH HOH . E 5 HOH A 34 434 10 HOH HOH . E 5 HOH A 35 435 36 HOH HOH . E 5 HOH A 36 436 57 HOH HOH . E 5 HOH A 37 437 71 HOH HOH . E 5 HOH A 38 438 22 HOH HOH . E 5 HOH A 39 439 62 HOH HOH . E 5 HOH A 40 440 54 HOH HOH . E 5 HOH A 41 441 1 HOH HOH . E 5 HOH A 42 442 67 HOH HOH . E 5 HOH A 43 443 16 HOH HOH . E 5 HOH A 44 444 55 HOH HOH . E 5 HOH A 45 445 23 HOH HOH . E 5 HOH A 46 446 50 HOH HOH . E 5 HOH A 47 447 53 HOH HOH . E 5 HOH A 48 448 11 HOH HOH . E 5 HOH A 49 449 58 HOH HOH . E 5 HOH A 50 450 51 HOH HOH . E 5 HOH A 51 451 33 HOH HOH . E 5 HOH A 52 452 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TOP . . . B 2 35.775 17.765 -10.725 1 33.57 ? C1 TOP 301 A 1 HETATM 2 N N2 TOP . . . B 2 36.632 16.764 -10.566 1 30.67 ? N2 TOP 301 A 1 HETATM 3 C C3 TOP . . . B 2 36.225 15.644 -9.917 1 30.31 ? C3 TOP 301 A 1 HETATM 4 N N4 TOP . . . B 2 37.133 14.531 -9.773 1 33.17 ? N4 TOP 301 A 1 HETATM 5 N N5 TOP . . . B 2 34.975 15.567 -9.411 1 32.95 ? N5 TOP 301 A 1 HETATM 6 C C6 TOP . . . B 2 34.135 16.573 -9.545 1 28.87 ? C6 TOP 301 A 1 HETATM 7 N N7 TOP . . . B 2 32.832 16.444 -8.97 1 28.18 ? N7 TOP 301 A 1 HETATM 8 C C8 TOP . . . B 2 34.509 17.705 -10.216 1 30.6 ? C8 TOP 301 A 1 HETATM 9 C C9 TOP . . . B 2 33.528 18.887 -10.398 1 33.07 ? C9 TOP 301 A 1 HETATM 10 C C10 TOP . . . B 2 34.163 20.092 -11.106 1 30.32 ? C10 TOP 301 A 1 HETATM 11 C C11 TOP . . . B 2 34.345 20.143 -12.48 1 29.25 ? C11 TOP 301 A 1 HETATM 12 C C12 TOP . . . B 2 34.944 21.26 -13.066 1 36.69 ? C12 TOP 301 A 1 HETATM 13 O O13 TOP . . . B 2 35.165 21.342 -14.444 1 34.83 ? O13 TOP 301 A 1 HETATM 14 C C14 TOP . . . B 2 34.519 20.397 -15.247 1 32.98 ? C14 TOP 301 A 1 HETATM 15 C C15 TOP . . . B 2 35.33 22.335 -12.284 1 37.27 ? C15 TOP 301 A 1 HETATM 16 O O16 TOP . . . B 2 35.903 23.471 -12.884 1 39.92 ? O16 TOP 301 A 1 HETATM 17 C C17 TOP . . . B 2 37.294 23.51 -12.819 1 40.21 ? C17 TOP 301 A 1 HETATM 18 C C18 TOP . . . B 2 35.123 22.287 -10.907 1 35.06 ? C18 TOP 301 A 1 HETATM 19 O O19 TOP . . . B 2 35.509 23.37 -10.094 1 38.58 ? O19 TOP 301 A 1 HETATM 20 C C20 TOP . . . B 2 35.365 23.173 -8.713 1 36.62 ? C20 TOP 301 A 1 HETATM 21 C C21 TOP . . . B 2 34.547 21.162 -10.33 1 32.07 ? C21 TOP 301 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #