data_6RUL # _model_server_result.job_id kbmug8lsDSWYA0sLULx2rQ _model_server_result.datetime_utc '2024-11-23 11:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RUL # _exptl.entry_id 6RUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RUL _cell.length_a 86.61 _cell.length_b 86.61 _cell.length_c 73.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 97 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 6RUL _atom_sites.fract_transf_matrix[1][1] 0.011546 _atom_sites.fract_transf_matrix[1][2] 0.006666 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP A 1 301 1 TOP TOP . C 3 NDP A 1 302 2 NDP NDP . D 4 PGE A 1 303 11 PGE PGE . E 5 HOH A 1 401 31 HOH HOH . E 5 HOH A 2 402 47 HOH HOH . E 5 HOH A 3 403 46 HOH HOH . E 5 HOH A 4 404 26 HOH HOH . E 5 HOH A 5 405 38 HOH HOH . E 5 HOH A 6 406 18 HOH HOH . E 5 HOH A 7 407 35 HOH HOH . E 5 HOH A 8 408 72 HOH HOH . E 5 HOH A 9 409 37 HOH HOH . E 5 HOH A 10 410 9 HOH HOH . E 5 HOH A 11 411 2 HOH HOH . E 5 HOH A 12 412 3 HOH HOH . E 5 HOH A 13 413 73 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 8 HOH HOH . E 5 HOH A 16 416 7 HOH HOH . E 5 HOH A 17 417 56 HOH HOH . E 5 HOH A 18 418 28 HOH HOH . E 5 HOH A 19 419 25 HOH HOH . E 5 HOH A 20 420 59 HOH HOH . E 5 HOH A 21 421 75 HOH HOH . E 5 HOH A 22 422 41 HOH HOH . E 5 HOH A 23 423 14 HOH HOH . E 5 HOH A 24 424 4 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 44 HOH HOH . E 5 HOH A 27 427 5 HOH HOH . E 5 HOH A 28 428 19 HOH HOH . E 5 HOH A 29 429 45 HOH HOH . E 5 HOH A 30 430 12 HOH HOH . E 5 HOH A 31 431 6 HOH HOH . E 5 HOH A 32 432 61 HOH HOH . E 5 HOH A 33 433 24 HOH HOH . E 5 HOH A 34 434 10 HOH HOH . E 5 HOH A 35 435 36 HOH HOH . E 5 HOH A 36 436 57 HOH HOH . E 5 HOH A 37 437 71 HOH HOH . E 5 HOH A 38 438 22 HOH HOH . E 5 HOH A 39 439 62 HOH HOH . E 5 HOH A 40 440 54 HOH HOH . E 5 HOH A 41 441 1 HOH HOH . E 5 HOH A 42 442 67 HOH HOH . E 5 HOH A 43 443 16 HOH HOH . E 5 HOH A 44 444 55 HOH HOH . E 5 HOH A 45 445 23 HOH HOH . E 5 HOH A 46 446 50 HOH HOH . E 5 HOH A 47 447 53 HOH HOH . E 5 HOH A 48 448 11 HOH HOH . E 5 HOH A 49 449 58 HOH HOH . E 5 HOH A 50 450 51 HOH HOH . E 5 HOH A 51 451 33 HOH HOH . E 5 HOH A 52 452 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 27.618 23.489 -2.677 1 36.58 ? PA NDP 302 A 1 HETATM 2 O O1A NDP . . . C 3 28.266 23.486 -4.011 1 36.67 ? O1A NDP 302 A 1 HETATM 3 O O2A NDP . . . C 3 27.359 22.219 -1.91 1 35.98 ? O2A NDP 302 A 1 HETATM 4 O O5B NDP . . . C 3 26.184 24.188 -2.958 1 37.39 ? O5B NDP 302 A 1 HETATM 5 C C5B NDP . . . C 3 25.717 24.749 -1.734 1 33.65 ? C5B NDP 302 A 1 HETATM 6 C C4B NDP . . . C 3 24.32 25.388 -2.078 1 36.68 ? C4B NDP 302 A 1 HETATM 7 O O4B NDP . . . C 3 23.499 24.473 -2.8 1 39.61 ? O4B NDP 302 A 1 HETATM 8 C C3B NDP . . . C 3 23.499 25.822 -0.829 1 44.59 ? C3B NDP 302 A 1 HETATM 9 O O3B NDP . . . C 3 23.935 27.045 -0.353 1 42.83 ? O3B NDP 302 A 1 HETATM 10 C C2B NDP . . . C 3 22.095 25.976 -1.493 1 42.53 ? C2B NDP 302 A 1 HETATM 11 O O2B NDP . . . C 3 22.014 26.967 -2.371 1 44.8 ? O2B NDP 302 A 1 HETATM 12 C C1B NDP . . . C 3 22.119 24.674 -2.401 1 41.34 ? C1B NDP 302 A 1 HETATM 13 N N9A NDP . . . C 3 21.624 23.528 -1.689 1 44.08 ? N9A NDP 302 A 1 HETATM 14 C C8A NDP . . . C 3 22.333 22.51 -1.038 1 43.19 ? C8A NDP 302 A 1 HETATM 15 N N7A NDP . . . C 3 21.517 21.602 -0.458 1 43.3 ? N7A NDP 302 A 1 HETATM 16 C C5A NDP . . . C 3 20.223 22.069 -0.745 1 41.64 ? C5A NDP 302 A 1 HETATM 17 C C6A NDP . . . C 3 18.937 21.574 -0.423 1 45.49 ? C6A NDP 302 A 1 HETATM 18 N N6A NDP . . . C 3 18.783 20.411 0.302 1 48 ? N6A NDP 302 A 1 HETATM 19 N N1A NDP . . . C 3 17.801 22.21 -0.829 1 45.85 ? N1A NDP 302 A 1 HETATM 20 C C2A NDP . . . C 3 18.026 23.366 -1.554 1 44.13 ? C2A NDP 302 A 1 HETATM 21 N N3A NDP . . . C 3 19.171 23.951 -1.94 1 42.53 ? N3A NDP 302 A 1 HETATM 22 C C4A NDP . . . C 3 20.278 23.266 -1.51 1 42.79 ? C4A NDP 302 A 1 HETATM 23 O O3 NDP . . . C 3 28.416 24.642 -1.818 1 34.45 ? O3 NDP 302 A 1 HETATM 24 P PN NDP . . . C 3 29.767 24.272 -1.064 1 35.2 ? PN NDP 302 A 1 HETATM 25 O O1N NDP . . . C 3 29.542 23.176 -0.105 1 40.95 ? O1N NDP 302 A 1 HETATM 26 O O2N NDP . . . C 3 30.427 25.55 -0.595 1 35.43 ? O2N NDP 302 A 1 HETATM 27 O O5D NDP . . . C 3 30.986 23.63 -2.134 1 39.47 ? O5D NDP 302 A 1 HETATM 28 C C5D NDP . . . C 3 31.478 24.594 -3.003 1 32.09 ? C5D NDP 302 A 1 HETATM 29 C C4D NDP . . . C 3 33 24.374 -3.079 1 36.09 ? C4D NDP 302 A 1 HETATM 30 O O4D NDP . . . C 3 33.334 22.966 -3.45 1 35.84 ? O4D NDP 302 A 1 HETATM 31 C C3D NDP . . . C 3 33.647 25.28 -4.146 1 34.59 ? C3D NDP 302 A 1 HETATM 32 O O3D NDP . . . C 3 34.864 25.71 -3.613 1 31.51 ? O3D NDP 302 A 1 HETATM 33 C C2D NDP . . . C 3 33.957 24.327 -5.289 1 31.31 ? C2D NDP 302 A 1 HETATM 34 O O2D NDP . . . C 3 35.124 24.734 -5.959 1 31.69 ? O2D NDP 302 A 1 HETATM 35 C C1D NDP . . . C 3 34.323 23.028 -4.476 1 34.18 ? C1D NDP 302 A 1 HETATM 36 N N1N NDP . . . C 3 34.165 21.848 -5.322 1 31.43 ? N1N NDP 302 A 1 HETATM 37 C C2N NDP . . . C 3 35.187 20.889 -5.409 1 33.63 ? C2N NDP 302 A 1 HETATM 38 C C3N NDP . . . C 3 34.957 19.712 -6.064 1 33.8 ? C3N NDP 302 A 1 HETATM 39 C C7N NDP . . . C 3 36.018 18.713 -6.124 1 33.47 ? C7N NDP 302 A 1 HETATM 40 O O7N NDP . . . C 3 35.81 17.56 -6.519 1 33.36 ? O7N NDP 302 A 1 HETATM 41 N N7N NDP . . . C 3 37.282 19.037 -5.723 1 27.92 ? N7N NDP 302 A 1 HETATM 42 C C4N NDP . . . C 3 33.625 19.369 -6.683 1 32.35 ? C4N NDP 302 A 1 HETATM 43 C C5N NDP . . . C 3 32.686 20.532 -6.693 1 36.64 ? C5N NDP 302 A 1 HETATM 44 C C6N NDP . . . C 3 32.976 21.677 -6.043 1 32.65 ? C6N NDP 302 A 1 HETATM 45 P P2B NDP . . . C 3 20.964 28.429 -1.954 1 40.82 ? P2B NDP 302 A 1 HETATM 46 O O1X NDP . . . C 3 21.983 28.955 -0.99 1 37.12 ? O1X NDP 302 A 1 HETATM 47 O O2X NDP . . . C 3 20.841 29.092 -3.33 1 42.3 ? O2X NDP 302 A 1 HETATM 48 O O3X NDP . . . C 3 19.73 27.773 -1.399 1 42.21 ? O3X NDP 302 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #