data_6RUL # _model_server_result.job_id fV517vtYgJ3sOY-wdNfFXg _model_server_result.datetime_utc '2024-11-08 20:54:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6RUL # _exptl.entry_id 6RUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RUL _cell.length_a 86.61 _cell.length_b 86.61 _cell.length_c 73.04 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 22 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 97 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.051 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 319 n n C1 C2 PGE sing 320 n n C1 H1 PGE sing 321 n n C1 H12 PGE sing 322 n n O1 HO1 PGE sing 323 n n C2 O2 PGE sing 324 n n C2 H2 PGE sing 325 n n C2 H22 PGE sing 326 n n O2 C3 PGE sing 327 n n C3 C4 PGE sing 328 n n C3 H3 PGE sing 329 n n C3 H32 PGE sing 330 n n C4 O3 PGE sing 331 n n C4 H4 PGE sing 332 n n C4 H42 PGE sing 333 n n O4 C6 PGE sing 334 n n O4 HO4 PGE sing 335 n n C6 C5 PGE sing 336 n n C6 H6 PGE sing 337 n n C6 H62 PGE sing 338 n n C5 O3 PGE sing 339 n n C5 H5 PGE sing 340 n n C5 H52 PGE sing 341 n n # _atom_sites.entry_id 6RUL _atom_sites.fract_transf_matrix[1][1] 0.011546 _atom_sites.fract_transf_matrix[1][2] 0.006666 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOP A 1 301 1 TOP TOP . C 3 NDP A 1 302 2 NDP NDP . D 4 PGE A 1 303 11 PGE PGE . E 5 HOH A 1 401 31 HOH HOH . E 5 HOH A 2 402 47 HOH HOH . E 5 HOH A 3 403 46 HOH HOH . E 5 HOH A 4 404 26 HOH HOH . E 5 HOH A 5 405 38 HOH HOH . E 5 HOH A 6 406 18 HOH HOH . E 5 HOH A 7 407 35 HOH HOH . E 5 HOH A 8 408 72 HOH HOH . E 5 HOH A 9 409 37 HOH HOH . E 5 HOH A 10 410 9 HOH HOH . E 5 HOH A 11 411 2 HOH HOH . E 5 HOH A 12 412 3 HOH HOH . E 5 HOH A 13 413 73 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 8 HOH HOH . E 5 HOH A 16 416 7 HOH HOH . E 5 HOH A 17 417 56 HOH HOH . E 5 HOH A 18 418 28 HOH HOH . E 5 HOH A 19 419 25 HOH HOH . E 5 HOH A 20 420 59 HOH HOH . E 5 HOH A 21 421 75 HOH HOH . E 5 HOH A 22 422 41 HOH HOH . E 5 HOH A 23 423 14 HOH HOH . E 5 HOH A 24 424 4 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 44 HOH HOH . E 5 HOH A 27 427 5 HOH HOH . E 5 HOH A 28 428 19 HOH HOH . E 5 HOH A 29 429 45 HOH HOH . E 5 HOH A 30 430 12 HOH HOH . E 5 HOH A 31 431 6 HOH HOH . E 5 HOH A 32 432 61 HOH HOH . E 5 HOH A 33 433 24 HOH HOH . E 5 HOH A 34 434 10 HOH HOH . E 5 HOH A 35 435 36 HOH HOH . E 5 HOH A 36 436 57 HOH HOH . E 5 HOH A 37 437 71 HOH HOH . E 5 HOH A 38 438 22 HOH HOH . E 5 HOH A 39 439 62 HOH HOH . E 5 HOH A 40 440 54 HOH HOH . E 5 HOH A 41 441 1 HOH HOH . E 5 HOH A 42 442 67 HOH HOH . E 5 HOH A 43 443 16 HOH HOH . E 5 HOH A 44 444 55 HOH HOH . E 5 HOH A 45 445 23 HOH HOH . E 5 HOH A 46 446 50 HOH HOH . E 5 HOH A 47 447 53 HOH HOH . E 5 HOH A 48 448 11 HOH HOH . E 5 HOH A 49 449 58 HOH HOH . E 5 HOH A 50 450 51 HOH HOH . E 5 HOH A 51 451 33 HOH HOH . E 5 HOH A 52 452 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 4 34.501 31.05 -12.268 1 55.97 ? C1 PGE 303 A 1 HETATM 2 O O1 PGE . . . D 4 33.538 31.922 -12.861 1 62.44 ? O1 PGE 303 A 1 HETATM 3 C C2 PGE . . . D 4 34.301 31.055 -10.764 1 52.89 ? C2 PGE 303 A 1 HETATM 4 O O2 PGE . . . D 4 35.482 31.439 -10.069 1 55.11 ? O2 PGE 303 A 1 HETATM 5 C C3 PGE . . . D 4 35.189 32.139 -8.869 1 49.53 ? C3 PGE 303 A 1 HETATM 6 C C4 PGE . . . D 4 36.436 32.857 -8.378 1 52.46 ? C4 PGE 303 A 1 HETATM 7 O O4 PGE . . . D 4 34.151 36.401 -6.558 1 58.39 ? O4 PGE 303 A 1 HETATM 8 C C6 PGE . . . D 4 34.466 35.075 -6.967 1 60.92 ? C6 PGE 303 A 1 HETATM 9 C C5 PGE . . . D 4 35.965 34.872 -7.145 1 53.88 ? C5 PGE 303 A 1 HETATM 10 O O3 PGE . . . D 4 36.175 33.467 -7.128 1 58.29 ? O3 PGE 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 10 #