data_6RUQ # _model_server_result.job_id NlpjjGQomAq_jZhmiqK_TA _model_server_result.datetime_utc '2024-11-28 21:03:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ruq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":902}' # _entry.id 6RUQ # _exptl.entry_id 6RUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.254 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.264 _cell.angle_gamma 90 _cell.entry_id 6RUQ _cell.length_a 91.773 _cell.length_b 306.596 _cell.length_c 107.728 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N ? 5 M N N ? 5 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG H 834 NAG 2 n E NAG 2 E 2 NAG H 835 NAG 2 n E BMA 3 E 3 BMA H 836 BMA 3 n F NAG 1 F 1 NAG G 834 NAG 3 n F NAG 2 F 2 NAG G 835 NAG 3 n F BMA 3 F 3 BMA G 836 BMA 3 n F BMA 4 F 4 BMA G 837 BMA 2 n G NAG 1 G 1 NAG I 834 NAG 2 n G NAG 2 G 2 NAG I 835 NAG 2 n G BMA 3 G 3 BMA I 836 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 346 A ASN 355 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 B ND2 ASN 346 B ASN 355 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 C ND2 ASN 346 C ASN 355 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale7 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C14 H15 F3 N3 O6 P' _chem_comp.formula_weight 409.254 _chem_comp.id ZK1 _chem_comp.mon_nstd_flag . _chem_comp.name '{[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[[3,4-Dihydro-7-(4-morpholinyl)-2,3-dioxo-6-(trifluorom ethyl)-1(2H)-quinoxalinyl]methyl]phosphonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OAA ZK1 doub 477 n n CAU OAB ZK1 doub 478 n n OAC PBA ZK1 doub 479 n n OAD PBA ZK1 sing 480 n n OAD HOAD ZK1 sing 481 n n PBA OAE ZK1 sing 482 n n OAE HOAE ZK1 sing 483 n n FAF CAZ ZK1 sing 484 n n CAZ FAG ZK1 sing 485 n n CAZ FAH ZK1 sing 486 n n CAR CAI ZK1 doub 487 n y CAI CAW ZK1 sing 488 n y CAI HAI ZK1 sing 489 n n CAS CAJ ZK1 doub 490 n y CAJ CAV ZK1 sing 491 n y CAJ HAJ ZK1 sing 492 n n CAK CAM ZK1 sing 493 n n CAK OAQ ZK1 sing 494 n n CAK HAK ZK1 sing 495 n n CAK HAKA ZK1 sing 496 n n OAQ CAL ZK1 sing 497 n n CAL CAN ZK1 sing 498 n n CAL HAL ZK1 sing 499 n n CAL HALA ZK1 sing 500 n n CAM NAX ZK1 sing 501 n n CAM HAM ZK1 sing 502 n n CAM HAMA ZK1 sing 503 n n NAX CAN ZK1 sing 504 n n CAN HAN ZK1 sing 505 n n CAN HANA ZK1 sing 506 n n PBA CAO ZK1 sing 507 n n NAY CAO ZK1 sing 508 n n CAO HAO ZK1 sing 509 n n CAO HAOA ZK1 sing 510 n n CAV NAP ZK1 sing 511 n n NAP CAT ZK1 sing 512 n n NAP HNAP ZK1 sing 513 n n NAX CAR ZK1 sing 514 n n CAS CAR ZK1 sing 515 n y CAZ CAS ZK1 sing 516 n n CAT CAU ZK1 sing 517 n n NAY CAU ZK1 sing 518 n n CAV CAW ZK1 doub 519 n y CAW NAY ZK1 sing 520 n n # _atom_sites.entry_id 6RUQ _atom_sites.fract_transf_matrix[1][1] 0.010896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000812 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 GYK A 1 901 1 GYK GYK . I 5 ZK1 A 1 902 2 ZK1 ZK1 . J 4 GYK B 1 901 3 GYK GYK . K 5 ZK1 B 1 902 3 ZK1 ZK1 . L 4 GYK C 1 901 2 GYK GYK . M 5 ZK1 C 1 902 1 ZK1 ZK1 . N 4 GYK D 1 901 4 GYK GYK . O 5 ZK1 D 1 902 4 ZK1 ZK1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZK1 . . . I 5 -63.815 -73.585 23.141 1 200.93 ? OAA ZK1 902 A 1 HETATM 2 O OAB ZK1 . . . I 5 -62.751 -74.79 20.781 1 201.92 ? OAB ZK1 902 A 1 HETATM 3 O OAC ZK1 . . . I 5 -60.159 -73.235 16.881 1 209.13 -1 OAC ZK1 902 A 1 HETATM 4 O OAD ZK1 . . . I 5 -62.048 -72.282 18.287 1 180.35 -1 OAD ZK1 902 A 1 HETATM 5 O OAE ZK1 . . . I 5 -62.249 -74.744 17.679 1 219.78 ? OAE ZK1 902 A 1 HETATM 6 F FAF ZK1 . . . I 5 -58.145 -67.757 22.679 1 190.09 ? FAF ZK1 902 A 1 HETATM 7 F FAG ZK1 . . . I 5 -58.653 -68.655 24.645 1 196.99 ? FAG ZK1 902 A 1 HETATM 8 F FAH ZK1 . . . I 5 -56.746 -69.198 23.662 1 204.76 ? FAH ZK1 902 A 1 HETATM 9 C CAI ZK1 . . . I 5 -58.961 -71.713 20.964 1 195.04 ? CAI ZK1 902 A 1 HETATM 10 C CAJ ZK1 . . . I 5 -60.012 -70.519 23.301 1 195.06 ? CAJ ZK1 902 A 1 HETATM 11 C CAK ZK1 . . . I 5 -55.618 -68.671 19.558 1 224.19 ? CAK ZK1 902 A 1 HETATM 12 C CAL ZK1 . . . I 5 -54.513 -70.442 20.519 1 223.27 ? CAL ZK1 902 A 1 HETATM 13 C CAM ZK1 . . . I 5 -56.991 -69.035 20.038 1 213.75 ? CAM ZK1 902 A 1 HETATM 14 C CAN ZK1 . . . I 5 -55.756 -70.976 21.267 1 213.76 ? CAN ZK1 902 A 1 HETATM 15 C CAO ZK1 . . . I 5 -60.357 -73.897 19.67 1 181.54 ? CAO ZK1 902 A 1 HETATM 16 N NAP ZK1 . . . I 5 -61.9 -72.035 23.229 1 184.1 ? NAP ZK1 902 A 1 HETATM 17 O OAQ ZK1 . . . I 5 -54.869 -69.808 19.318 1 232.16 ? OAQ ZK1 902 A 1 HETATM 18 C CAR ZK1 . . . I 5 -58.255 -70.642 21.576 1 198.29 ? CAR ZK1 902 A 1 HETATM 19 C CAS ZK1 . . . I 5 -58.772 -70.039 22.745 1 197.21 ? CAS ZK1 902 A 1 HETATM 20 C CAT ZK1 . . . I 5 -62.604 -73.117 22.598 1 188.41 ? CAT ZK1 902 A 1 HETATM 21 C CAU ZK1 . . . I 5 -62.066 -73.732 21.399 1 188.06 ? CAU ZK1 902 A 1 HETATM 22 C CAV ZK1 . . . I 5 -60.709 -71.578 22.692 1 188.76 ? CAV ZK1 902 A 1 HETATM 23 C CAW ZK1 . . . I 5 -60.185 -72.181 21.518 1 187 ? CAW ZK1 902 A 1 HETATM 24 N NAX ZK1 . . . I 5 -57.005 -70.21 20.964 1 206.61 ? NAX ZK1 902 A 1 HETATM 25 N NAY ZK1 . . . I 5 -60.901 -73.286 20.876 1 181.18 ? NAY ZK1 902 A 1 HETATM 26 C CAZ ZK1 . . . I 5 -58.057 -68.886 23.445 1 197.44 ? CAZ ZK1 902 A 1 HETATM 27 P PBA ZK1 . . . I 5 -61.253 -73.492 18.088 1 187.01 ? PBA ZK1 902 A 1 # _model_server_stats.io_time_ms 147 _model_server_stats.parse_time_ms 170 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #