data_6RUX
#
_model_server_result.job_id            vMmgnxDw-O4GhAotH5NJbw 
_model_server_result.datetime_utc      '2025-03-06 10:16:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    6RUX 
#
_exptl.entry_id    6RUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6RUX 
_cell.length_a            136.178 
_cell.length_b            136.178 
_cell.length_c            139.332 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,J 1 1 
B,E,H,K 2 1 
C,F,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   GLC 
_pdbx_entity_branch_link.comp_id_2                   GLC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n D GLC 1 D 1 GLC A 501 MAL 
2 n D GLC 2 D 2 GLC A 501 MAL 
2 n E GLC 1 E 1 GLC B 501 MAL 
2 n E GLC 2 E 2 GLC B 501 MAL 
2 n F GLC 1 F 1 GLC C 501 MAL 
2 n F GLC 2 F 2 GLC C 501 MAL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing 
covale ? covale2 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing 
covale ? covale3 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6RUX 
_atom_sites.fract_transf_matrix[1][1]    0.007343 
_atom_sites.fract_transf_matrix[1][2]    0.00424 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007177 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NA A 1 502 502 NA NA . 
H 3 NA B 1 502 502 NA NA . 
I 3 NA C 1 502 502 NA NA . 
J 4 HOH A 1 601 601 HOH HOH . 
J 4 HOH A 2 602 602 HOH HOH . 
J 4 HOH A 3 603 603 HOH HOH . 
J 4 HOH A 4 604 604 HOH HOH . 
J 4 HOH A 5 605 605 HOH HOH . 
J 4 HOH A 6 606 606 HOH HOH . 
J 4 HOH A 7 607 607 HOH HOH . 
J 4 HOH A 8 608 608 HOH HOH . 
J 4 HOH A 9 609 609 HOH HOH . 
J 4 HOH A 10 610 610 HOH HOH . 
J 4 HOH A 11 611 611 HOH HOH . 
J 4 HOH A 12 612 612 HOH HOH . 
J 4 HOH A 13 613 613 HOH HOH . 
J 4 HOH A 14 614 614 HOH HOH . 
J 4 HOH A 15 615 615 HOH HOH . 
J 4 HOH A 16 616 616 HOH HOH . 
J 4 HOH A 17 617 617 HOH HOH . 
J 4 HOH A 18 618 618 HOH HOH . 
J 4 HOH A 19 619 619 HOH HOH . 
J 4 HOH A 20 620 620 HOH HOH . 
J 4 HOH A 21 621 621 HOH HOH . 
J 4 HOH A 22 622 622 HOH HOH . 
J 4 HOH A 23 623 623 HOH HOH . 
J 4 HOH A 24 624 624 HOH HOH . 
J 4 HOH A 25 625 625 HOH HOH . 
J 4 HOH A 26 626 626 HOH HOH . 
J 4 HOH A 27 627 627 HOH HOH . 
J 4 HOH A 28 628 628 HOH HOH . 
J 4 HOH A 29 629 629 HOH HOH . 
J 4 HOH A 30 630 630 HOH HOH . 
J 4 HOH A 31 631 631 HOH HOH . 
J 4 HOH A 32 632 632 HOH HOH . 
J 4 HOH A 33 633 633 HOH HOH . 
J 4 HOH A 34 634 634 HOH HOH . 
J 4 HOH A 35 635 635 HOH HOH . 
J 4 HOH A 36 636 636 HOH HOH . 
J 4 HOH A 37 637 637 HOH HOH . 
J 4 HOH A 38 638 638 HOH HOH . 
K 4 HOH B 1 601 601 HOH HOH . 
K 4 HOH B 2 602 602 HOH HOH . 
K 4 HOH B 3 603 603 HOH HOH . 
K 4 HOH B 4 604 604 HOH HOH . 
K 4 HOH B 5 605 605 HOH HOH . 
K 4 HOH B 6 606 606 HOH HOH . 
K 4 HOH B 7 607 607 HOH HOH . 
K 4 HOH B 8 608 608 HOH HOH . 
K 4 HOH B 9 609 609 HOH HOH . 
K 4 HOH B 10 610 610 HOH HOH . 
K 4 HOH B 11 611 611 HOH HOH . 
K 4 HOH B 12 612 612 HOH HOH . 
K 4 HOH B 13 613 613 HOH HOH . 
K 4 HOH B 14 614 614 HOH HOH . 
K 4 HOH B 15 615 615 HOH HOH . 
K 4 HOH B 16 616 616 HOH HOH . 
K 4 HOH B 17 617 617 HOH HOH . 
K 4 HOH B 18 618 618 HOH HOH . 
K 4 HOH B 19 619 619 HOH HOH . 
K 4 HOH B 20 620 620 HOH HOH . 
K 4 HOH B 21 621 621 HOH HOH . 
K 4 HOH B 22 622 622 HOH HOH . 
K 4 HOH B 23 623 623 HOH HOH . 
K 4 HOH B 24 624 624 HOH HOH . 
K 4 HOH B 25 625 625 HOH HOH . 
K 4 HOH B 26 626 626 HOH HOH . 
K 4 HOH B 27 627 627 HOH HOH . 
K 4 HOH B 28 628 628 HOH HOH . 
K 4 HOH B 29 629 629 HOH HOH . 
K 4 HOH B 30 630 630 HOH HOH . 
K 4 HOH B 31 631 631 HOH HOH . 
K 4 HOH B 32 632 632 HOH HOH . 
K 4 HOH B 33 633 633 HOH HOH . 
K 4 HOH B 34 634 634 HOH HOH . 
K 4 HOH B 35 635 635 HOH HOH . 
K 4 HOH B 36 636 636 HOH HOH . 
K 4 HOH B 37 637 637 HOH HOH . 
K 4 HOH B 38 638 638 HOH HOH . 
K 4 HOH B 39 639 639 HOH HOH . 
K 4 HOH B 40 640 640 HOH HOH . 
K 4 HOH B 41 641 641 HOH HOH . 
K 4 HOH B 42 642 642 HOH HOH . 
K 4 HOH B 43 643 643 HOH HOH . 
K 4 HOH B 44 644 644 HOH HOH . 
L 4 HOH C 1 601 601 HOH HOH . 
L 4 HOH C 2 602 602 HOH HOH . 
L 4 HOH C 3 603 603 HOH HOH . 
L 4 HOH C 4 604 604 HOH HOH . 
L 4 HOH C 5 605 605 HOH HOH . 
L 4 HOH C 6 606 606 HOH HOH . 
L 4 HOH C 7 607 607 HOH HOH . 
L 4 HOH C 8 608 608 HOH HOH . 
L 4 HOH C 9 609 609 HOH HOH . 
L 4 HOH C 10 610 610 HOH HOH . 
L 4 HOH C 11 611 611 HOH HOH . 
L 4 HOH C 12 612 612 HOH HOH . 
L 4 HOH C 13 613 613 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -43.38 
_atom_site.Cartn_y               29.738 
_atom_site.Cartn_z               6.221 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        53.63 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#