data_6RVB # _model_server_result.job_id SVsCE6Lfr_PCFJsyJ7wPvQ _model_server_result.datetime_utc '2025-03-13 17:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":503}' # _entry.id 6RVB # _exptl.entry_id 6RVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RVB _cell.length_a 160.75 _cell.length_b 160.75 _cell.length_c 256.92 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,K,L,M,S 2 1 D,N,O,P,T 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 160.75 -160.75 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 44 A CYS 44 1_555 G S1P COA . A COA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? covale ? covale2 B SG CYS 44 B CYS 44 1_555 J S1P COA . B COA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? covale ? covale3 C SG CYS 44 C CYS 44 1_555 M S1P COA . C COA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? covale ? covale4 D SG CYS 44 D CYS 44 1_555 P S1P COA . D COA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6RVB _atom_sites.fract_transf_matrix[1][1] 0.006221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 501 FAD FAD . F 3 NAD A 1 502 502 NAD NAD . G 4 COA A 1 503 503 COA COA . H 2 FAD B 1 501 501 FAD FAD . I 3 NAD B 1 502 502 NAD NAD . J 4 COA B 1 503 503 COA COA . K 2 FAD C 1 501 501 FAD FAD . L 3 NAD C 1 502 502 NAD NAD . M 4 COA C 1 503 503 COA COA . N 2 FAD D 1 501 501 FAD FAD . O 3 NAD D 1 502 502 NAD NAD . P 4 COA D 1 503 503 COA COA . Q 5 HOH A 1 601 112 HOH HOH . Q 5 HOH A 2 602 91 HOH HOH . Q 5 HOH A 3 603 52 HOH HOH . Q 5 HOH A 4 604 15 HOH HOH . Q 5 HOH A 5 605 12 HOH HOH . Q 5 HOH A 6 606 106 HOH HOH . Q 5 HOH A 7 607 40 HOH HOH . Q 5 HOH A 8 608 18 HOH HOH . Q 5 HOH A 9 609 5 HOH HOH . Q 5 HOH A 10 610 75 HOH HOH . Q 5 HOH A 11 611 54 HOH HOH . Q 5 HOH A 12 612 33 HOH HOH . Q 5 HOH A 13 613 2 HOH HOH . Q 5 HOH A 14 614 20 HOH HOH . Q 5 HOH A 15 615 68 HOH HOH . Q 5 HOH A 16 616 47 HOH HOH . Q 5 HOH A 17 617 39 HOH HOH . Q 5 HOH A 18 618 62 HOH HOH . Q 5 HOH A 19 619 22 HOH HOH . Q 5 HOH A 20 620 103 HOH HOH . Q 5 HOH A 21 621 95 HOH HOH . Q 5 HOH A 22 622 41 HOH HOH . Q 5 HOH A 23 623 76 HOH HOH . Q 5 HOH A 24 624 35 HOH HOH . Q 5 HOH A 25 625 42 HOH HOH . Q 5 HOH A 26 626 30 HOH HOH . Q 5 HOH A 27 627 86 HOH HOH . Q 5 HOH A 28 628 105 HOH HOH . Q 5 HOH A 29 629 3 HOH HOH . Q 5 HOH A 30 630 96 HOH HOH . Q 5 HOH A 31 631 45 HOH HOH . Q 5 HOH A 32 632 58 HOH HOH . R 5 HOH B 1 601 34 HOH HOH . R 5 HOH B 2 602 70 HOH HOH . R 5 HOH B 3 603 37 HOH HOH . R 5 HOH B 4 604 51 HOH HOH . R 5 HOH B 5 605 48 HOH HOH . R 5 HOH B 6 606 82 HOH HOH . R 5 HOH B 7 607 104 HOH HOH . R 5 HOH B 8 608 85 HOH HOH . R 5 HOH B 9 609 88 HOH HOH . R 5 HOH B 10 610 26 HOH HOH . R 5 HOH B 11 611 100 HOH HOH . R 5 HOH B 12 612 77 HOH HOH . R 5 HOH B 13 613 93 HOH HOH . R 5 HOH B 14 614 32 HOH HOH . R 5 HOH B 15 615 16 HOH HOH . R 5 HOH B 16 616 99 HOH HOH . R 5 HOH B 17 617 74 HOH HOH . R 5 HOH B 18 618 63 HOH HOH . R 5 HOH B 19 619 4 HOH HOH . R 5 HOH B 20 620 24 HOH HOH . R 5 HOH B 21 621 60 HOH HOH . R 5 HOH B 22 622 46 HOH HOH . R 5 HOH B 23 623 55 HOH HOH . R 5 HOH B 24 624 9 HOH HOH . R 5 HOH B 25 625 111 HOH HOH . R 5 HOH B 26 626 102 HOH HOH . R 5 HOH B 27 627 109 HOH HOH . S 5 HOH C 1 601 1 HOH HOH . S 5 HOH C 2 602 13 HOH HOH . S 5 HOH C 3 603 17 HOH HOH . S 5 HOH C 4 604 21 HOH HOH . S 5 HOH C 5 605 89 HOH HOH . S 5 HOH C 6 606 65 HOH HOH . S 5 HOH C 7 607 11 HOH HOH . S 5 HOH C 8 608 7 HOH HOH . S 5 HOH C 9 609 23 HOH HOH . S 5 HOH C 10 610 66 HOH HOH . S 5 HOH C 11 611 90 HOH HOH . S 5 HOH C 12 612 50 HOH HOH . S 5 HOH C 13 613 97 HOH HOH . S 5 HOH C 14 614 71 HOH HOH . S 5 HOH C 15 615 36 HOH HOH . S 5 HOH C 16 616 80 HOH HOH . S 5 HOH C 17 617 44 HOH HOH . S 5 HOH C 18 618 53 HOH HOH . S 5 HOH C 19 619 59 HOH HOH . S 5 HOH C 20 620 84 HOH HOH . S 5 HOH C 21 621 38 HOH HOH . S 5 HOH C 22 622 73 HOH HOH . S 5 HOH C 23 623 94 HOH HOH . S 5 HOH C 24 624 107 HOH HOH . S 5 HOH C 25 625 61 HOH HOH . S 5 HOH C 26 626 110 HOH HOH . S 5 HOH C 27 627 98 HOH HOH . T 5 HOH D 1 601 27 HOH HOH . T 5 HOH D 2 602 83 HOH HOH . T 5 HOH D 3 603 108 HOH HOH . T 5 HOH D 4 604 78 HOH HOH . T 5 HOH D 5 605 31 HOH HOH . T 5 HOH D 6 606 64 HOH HOH . T 5 HOH D 7 607 28 HOH HOH . T 5 HOH D 8 608 56 HOH HOH . T 5 HOH D 9 609 14 HOH HOH . T 5 HOH D 10 610 92 HOH HOH . T 5 HOH D 11 611 25 HOH HOH . T 5 HOH D 12 612 10 HOH HOH . T 5 HOH D 13 613 67 HOH HOH . T 5 HOH D 14 614 6 HOH HOH . T 5 HOH D 15 615 43 HOH HOH . T 5 HOH D 16 616 19 HOH HOH . T 5 HOH D 17 617 8 HOH HOH . T 5 HOH D 18 618 69 HOH HOH . T 5 HOH D 19 619 49 HOH HOH . T 5 HOH D 20 620 29 HOH HOH . T 5 HOH D 21 621 87 HOH HOH . T 5 HOH D 22 622 72 HOH HOH . T 5 HOH D 23 623 101 HOH HOH . T 5 HOH D 24 624 57 HOH HOH . T 5 HOH D 25 625 79 HOH HOH . T 5 HOH D 26 626 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . M 4 122.567 -89.201 46.97 1 57.03 ? N1A COA 503 C 1 HETATM 2 C C2A COA . . . M 4 123.701 -89.007 47.726 1 58.51 ? C2A COA 503 C 1 HETATM 3 N N3A COA . . . M 4 124.16 -87.798 48.149 1 57.85 ? N3A COA 503 C 1 HETATM 4 C C4A COA . . . M 4 123.528 -86.626 47.835 1 62.6 ? C4A COA 503 C 1 HETATM 5 C C5A COA . . . M 4 122.295 -86.731 47.008 1 67.01 ? C5A COA 503 C 1 HETATM 6 C C6A COA . . . M 4 121.834 -88.095 46.574 1 65.48 ? C6A COA 503 C 1 HETATM 7 N N6A COA . . . M 4 120.704 -88.148 45.793 1 63.45 ? N6A COA 503 C 1 HETATM 8 N N7A COA . . . M 4 121.843 -85.454 46.801 1 70.95 ? N7A COA 503 C 1 HETATM 9 C C8A COA . . . M 4 122.717 -84.593 47.409 1 67.69 ? C8A COA 503 C 1 HETATM 10 N N9A COA . . . M 4 123.711 -85.28 48.039 1 70.83 ? N9A COA 503 C 1 HETATM 11 C C1B COA . . . M 4 124.796 -84.608 48.823 1 75.85 ? C1B COA 503 C 1 HETATM 12 C C2B COA . . . M 4 125.635 -83.658 47.992 1 71.76 ? C2B COA 503 C 1 HETATM 13 O O2B COA . . . M 4 126.654 -84.433 47.35 1 70.73 ? O2B COA 503 C 1 HETATM 14 C C3B COA . . . M 4 126.224 -82.721 49.044 1 73.28 ? C3B COA 503 C 1 HETATM 15 O O3B COA . . . M 4 127.545 -83.151 49.475 1 74.63 ? O3B COA 503 C 1 HETATM 16 P P3B COA . . . M 4 128.536 -82.466 50.562 1 73.8 ? P3B COA 503 C 1 HETATM 17 O O7A COA . . . M 4 129.899 -82.984 50.033 1 66.07 ? O7A COA 503 C 1 HETATM 18 O O8A COA . . . M 4 128.29 -80.966 50.594 1 59.73 ? O8A COA 503 C 1 HETATM 19 O O9A COA . . . M 4 128.014 -82.998 51.872 1 79.21 ? O9A COA 503 C 1 HETATM 20 C C4B COA . . . M 4 125.198 -82.751 50.175 1 71.32 ? C4B COA 503 C 1 HETATM 21 O O4B COA . . . M 4 124.301 -83.813 49.907 1 76.4 ? O4B COA 503 C 1 HETATM 22 C C5B COA . . . M 4 124.335 -81.51 50.279 1 72.48 ? C5B COA 503 C 1 HETATM 23 O O5B COA . . . M 4 123.266 -81.535 49.31 1 80.8 ? O5B COA 503 C 1 HETATM 24 P P1A COA . . . M 4 121.857 -80.757 49.632 1 82.73 ? P1A COA 503 C 1 HETATM 25 O O1A COA . . . M 4 120.976 -81.138 48.5 1 68.25 ? O1A COA 503 C 1 HETATM 26 O O2A COA . . . M 4 121.402 -81.016 51.074 1 79.6 ? O2A COA 503 C 1 HETATM 27 O O3A COA . . . M 4 122.31 -79.22 49.38 1 75.5 ? O3A COA 503 C 1 HETATM 28 P P2A COA . . . M 4 122.605 -77.984 50.419 1 78.24 ? P2A COA 503 C 1 HETATM 29 O O4A COA . . . M 4 123.969 -77.317 50.138 1 64.68 ? O4A COA 503 C 1 HETATM 30 O O5A COA . . . M 4 122.231 -78.332 51.845 1 73.45 ? O5A COA 503 C 1 HETATM 31 O O6A COA . . . M 4 121.358 -77.088 49.921 1 77.92 ? O6A COA 503 C 1 HETATM 32 C CBP COA . . . M 4 120.001 -75.378 49.129 1 63.52 ? CBP COA 503 C 1 HETATM 33 C CCP COA . . . M 4 121.4 -75.724 49.547 1 68.03 ? CCP COA 503 C 1 HETATM 34 C CDP COA . . . M 4 119.042 -76.538 49.16 1 54.08 ? CDP COA 503 C 1 HETATM 35 C CEP COA . . . M 4 119.512 -74.483 50.244 1 60.13 ? CEP COA 503 C 1 HETATM 36 C CAP COA . . . M 4 120.171 -74.786 47.702 1 74.9 ? CAP COA 503 C 1 HETATM 37 O OAP COA . . . M 4 120.709 -75.766 46.752 1 73.43 ? OAP COA 503 C 1 HETATM 38 C C9P COA . . . M 4 118.919 -74.167 47.124 1 71.43 ? C9P COA 503 C 1 HETATM 39 O O9P COA . . . M 4 118.37 -73.204 47.625 1 65.26 ? O9P COA 503 C 1 HETATM 40 N N8P COA . . . M 4 118.369 -74.714 46.05 1 78.21 ? N8P COA 503 C 1 HETATM 41 C C7P COA . . . M 4 116.98 -74.3 45.838 1 72.4 ? C7P COA 503 C 1 HETATM 42 C C6P COA . . . M 4 116.904 -73.184 44.818 1 64.04 ? C6P COA 503 C 1 HETATM 43 C C5P COA . . . M 4 117.646 -73.702 43.604 1 73.7 ? C5P COA 503 C 1 HETATM 44 O O5P COA . . . M 4 118.88 -73.679 43.55 1 82.55 ? O5P COA 503 C 1 HETATM 45 N N4P COA . . . M 4 116.961 -74.181 42.585 1 80.23 ? N4P COA 503 C 1 HETATM 46 C C3P COA . . . M 4 117.647 -73.974 41.333 1 79.21 ? C3P COA 503 C 1 HETATM 47 C C2P COA . . . M 4 117.812 -72.477 41.134 1 71.75 ? C2P COA 503 C 1 HETATM 48 S S1P COA . . . M 4 116.48 -72.08 39.96 1 116.02 ? S1P COA 503 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #