data_6RVC # _model_server_result.job_id PeKCZdEkKD8yEWiLJNp3dw _model_server_result.datetime_utc '2025-07-27 21:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rvc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 6RVC # _exptl.entry_id 6RVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RVC _cell.length_a 76.18 _cell.length_b 101.12 _cell.length_c 106.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,J,M 1 1 B,E,K,N 2 1 C,F,H,I,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf3 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 113 A ASN 875 1_555 G C1 NAG . A NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 C ND2 ASN 113 C ASN 875 1_555 H C1 NAG . C NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6RVC _atom_sites.fract_transf_matrix[1][1] 0.013127 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 1101 1 NAG NAG . H 3 NAG C 1 1101 3 NAG NAG . I 4 SO4 C 1 1102 1 SO4 SO4 . J 5 HOH A 1 1201 109 HOH HOH . J 5 HOH A 2 1202 97 HOH HOH . J 5 HOH A 3 1203 165 HOH HOH . J 5 HOH A 4 1204 170 HOH HOH . J 5 HOH A 5 1205 44 HOH HOH . J 5 HOH A 6 1206 27 HOH HOH . J 5 HOH A 7 1207 84 HOH HOH . J 5 HOH A 8 1208 70 HOH HOH . J 5 HOH A 9 1209 103 HOH HOH . J 5 HOH A 10 1210 23 HOH HOH . J 5 HOH A 11 1211 38 HOH HOH . J 5 HOH A 12 1212 13 HOH HOH . J 5 HOH A 13 1213 37 HOH HOH . J 5 HOH A 14 1214 180 HOH HOH . J 5 HOH A 15 1215 197 HOH HOH . J 5 HOH A 16 1216 106 HOH HOH . J 5 HOH A 17 1217 5 HOH HOH . J 5 HOH A 18 1218 6 HOH HOH . J 5 HOH A 19 1219 152 HOH HOH . J 5 HOH A 20 1220 114 HOH HOH . J 5 HOH A 21 1221 25 HOH HOH . J 5 HOH A 22 1222 64 HOH HOH . J 5 HOH A 23 1223 122 HOH HOH . J 5 HOH A 24 1224 73 HOH HOH . J 5 HOH A 25 1225 167 HOH HOH . J 5 HOH A 26 1226 90 HOH HOH . J 5 HOH A 27 1227 35 HOH HOH . J 5 HOH A 28 1228 47 HOH HOH . J 5 HOH A 29 1229 107 HOH HOH . J 5 HOH A 30 1230 85 HOH HOH . J 5 HOH A 31 1231 19 HOH HOH . J 5 HOH A 32 1232 10 HOH HOH . J 5 HOH A 33 1233 134 HOH HOH . J 5 HOH A 34 1234 11 HOH HOH . J 5 HOH A 35 1235 135 HOH HOH . J 5 HOH A 36 1236 189 HOH HOH . J 5 HOH A 37 1237 191 HOH HOH . J 5 HOH A 38 1238 190 HOH HOH . J 5 HOH A 39 1239 157 HOH HOH . J 5 HOH A 40 1240 148 HOH HOH . J 5 HOH A 41 1241 187 HOH HOH . J 5 HOH A 42 1242 125 HOH HOH . J 5 HOH A 43 1243 127 HOH HOH . K 5 HOH B 1 1101 32 HOH HOH . K 5 HOH B 2 1102 182 HOH HOH . K 5 HOH B 3 1103 88 HOH HOH . K 5 HOH B 4 1104 164 HOH HOH . K 5 HOH B 5 1105 20 HOH HOH . K 5 HOH B 6 1106 163 HOH HOH . K 5 HOH B 7 1107 150 HOH HOH . K 5 HOH B 8 1108 136 HOH HOH . K 5 HOH B 9 1109 40 HOH HOH . K 5 HOH B 10 1110 141 HOH HOH . K 5 HOH B 11 1111 96 HOH HOH . K 5 HOH B 12 1112 67 HOH HOH . K 5 HOH B 13 1113 24 HOH HOH . K 5 HOH B 14 1114 132 HOH HOH . K 5 HOH B 15 1115 74 HOH HOH . K 5 HOH B 16 1116 34 HOH HOH . K 5 HOH B 17 1117 48 HOH HOH . K 5 HOH B 18 1118 102 HOH HOH . K 5 HOH B 19 1119 39 HOH HOH . K 5 HOH B 20 1120 160 HOH HOH . K 5 HOH B 21 1121 50 HOH HOH . K 5 HOH B 22 1122 18 HOH HOH . K 5 HOH B 23 1123 104 HOH HOH . K 5 HOH B 24 1124 30 HOH HOH . K 5 HOH B 25 1125 68 HOH HOH . K 5 HOH B 26 1126 45 HOH HOH . K 5 HOH B 27 1127 133 HOH HOH . K 5 HOH B 28 1128 188 HOH HOH . L 5 HOH C 1 1201 110 HOH HOH . L 5 HOH C 2 1202 174 HOH HOH . L 5 HOH C 3 1203 193 HOH HOH . L 5 HOH C 4 1204 153 HOH HOH . L 5 HOH C 5 1205 77 HOH HOH . L 5 HOH C 6 1206 161 HOH HOH . L 5 HOH C 7 1207 72 HOH HOH . L 5 HOH C 8 1208 119 HOH HOH . L 5 HOH C 9 1209 99 HOH HOH . L 5 HOH C 10 1210 126 HOH HOH . L 5 HOH C 11 1211 179 HOH HOH . L 5 HOH C 12 1212 80 HOH HOH . L 5 HOH C 13 1213 178 HOH HOH . L 5 HOH C 14 1214 92 HOH HOH . L 5 HOH C 15 1215 71 HOH HOH . L 5 HOH C 16 1216 33 HOH HOH . L 5 HOH C 17 1217 69 HOH HOH . L 5 HOH C 18 1218 14 HOH HOH . L 5 HOH C 19 1219 202 HOH HOH . L 5 HOH C 20 1220 151 HOH HOH . L 5 HOH C 21 1221 54 HOH HOH . L 5 HOH C 22 1222 55 HOH HOH . L 5 HOH C 23 1223 43 HOH HOH . L 5 HOH C 24 1224 130 HOH HOH . L 5 HOH C 25 1225 8 HOH HOH . L 5 HOH C 26 1226 82 HOH HOH . L 5 HOH C 27 1227 173 HOH HOH . L 5 HOH C 28 1228 137 HOH HOH . L 5 HOH C 29 1229 87 HOH HOH . L 5 HOH C 30 1230 200 HOH HOH . L 5 HOH C 31 1231 131 HOH HOH . L 5 HOH C 32 1232 186 HOH HOH . L 5 HOH C 33 1233 95 HOH HOH . L 5 HOH C 34 1234 128 HOH HOH . M 5 HOH D 1 201 123 HOH HOH . M 5 HOH D 2 202 176 HOH HOH . M 5 HOH D 3 203 158 HOH HOH . M 5 HOH D 4 204 146 HOH HOH . M 5 HOH D 5 205 171 HOH HOH . M 5 HOH D 6 206 144 HOH HOH . M 5 HOH D 7 207 198 HOH HOH . M 5 HOH D 8 208 142 HOH HOH . M 5 HOH D 9 209 52 HOH HOH . M 5 HOH D 10 210 116 HOH HOH . M 5 HOH D 11 211 201 HOH HOH . M 5 HOH D 12 212 2 HOH HOH . M 5 HOH D 13 213 1 HOH HOH . M 5 HOH D 14 214 194 HOH HOH . M 5 HOH D 15 215 51 HOH HOH . M 5 HOH D 16 216 168 HOH HOH . M 5 HOH D 17 217 183 HOH HOH . M 5 HOH D 18 218 75 HOH HOH . M 5 HOH D 19 219 94 HOH HOH . M 5 HOH D 20 220 21 HOH HOH . M 5 HOH D 21 221 113 HOH HOH . M 5 HOH D 22 222 31 HOH HOH . M 5 HOH D 23 223 121 HOH HOH . M 5 HOH D 24 224 28 HOH HOH . M 5 HOH D 25 225 162 HOH HOH . M 5 HOH D 26 226 42 HOH HOH . M 5 HOH D 27 227 4 HOH HOH . M 5 HOH D 28 228 66 HOH HOH . M 5 HOH D 29 229 124 HOH HOH . M 5 HOH D 30 230 192 HOH HOH . M 5 HOH D 31 231 22 HOH HOH . M 5 HOH D 32 232 62 HOH HOH . M 5 HOH D 33 233 26 HOH HOH . M 5 HOH D 34 234 149 HOH HOH . M 5 HOH D 35 235 58 HOH HOH . M 5 HOH D 36 236 140 HOH HOH . M 5 HOH D 37 237 7 HOH HOH . M 5 HOH D 38 238 138 HOH HOH . M 5 HOH D 39 239 60 HOH HOH . M 5 HOH D 40 240 156 HOH HOH . M 5 HOH D 41 241 3 HOH HOH . M 5 HOH D 42 242 29 HOH HOH . M 5 HOH D 43 243 100 HOH HOH . M 5 HOH D 44 244 185 HOH HOH . M 5 HOH D 45 245 120 HOH HOH . M 5 HOH D 46 246 154 HOH HOH . M 5 HOH D 47 247 115 HOH HOH . M 5 HOH D 48 248 111 HOH HOH . M 5 HOH D 49 249 166 HOH HOH . N 5 HOH E 1 201 108 HOH HOH . N 5 HOH E 2 202 169 HOH HOH . N 5 HOH E 3 203 181 HOH HOH . N 5 HOH E 4 204 57 HOH HOH . N 5 HOH E 5 205 17 HOH HOH . N 5 HOH E 6 206 41 HOH HOH . N 5 HOH E 7 207 36 HOH HOH . N 5 HOH E 8 208 49 HOH HOH . N 5 HOH E 9 209 79 HOH HOH . N 5 HOH E 10 210 12 HOH HOH . N 5 HOH E 11 211 195 HOH HOH . N 5 HOH E 12 212 98 HOH HOH . N 5 HOH E 13 213 59 HOH HOH . N 5 HOH E 14 214 155 HOH HOH . N 5 HOH E 15 215 147 HOH HOH . N 5 HOH E 16 216 61 HOH HOH . N 5 HOH E 17 217 118 HOH HOH . N 5 HOH E 18 218 177 HOH HOH . N 5 HOH E 19 219 143 HOH HOH . N 5 HOH E 20 220 93 HOH HOH . N 5 HOH E 21 221 117 HOH HOH . N 5 HOH E 22 222 76 HOH HOH . N 5 HOH E 23 223 63 HOH HOH . N 5 HOH E 24 224 53 HOH HOH . N 5 HOH E 25 225 172 HOH HOH . N 5 HOH E 26 226 86 HOH HOH . N 5 HOH E 27 227 9 HOH HOH . N 5 HOH E 28 228 89 HOH HOH . O 5 HOH F 1 201 199 HOH HOH . O 5 HOH F 2 202 139 HOH HOH . O 5 HOH F 3 203 101 HOH HOH . O 5 HOH F 4 204 105 HOH HOH . O 5 HOH F 5 205 112 HOH HOH . O 5 HOH F 6 206 15 HOH HOH . O 5 HOH F 7 207 145 HOH HOH . O 5 HOH F 8 208 184 HOH HOH . O 5 HOH F 9 209 78 HOH HOH . O 5 HOH F 10 210 16 HOH HOH . O 5 HOH F 11 211 65 HOH HOH . O 5 HOH F 12 212 159 HOH HOH . O 5 HOH F 13 213 91 HOH HOH . O 5 HOH F 14 214 56 HOH HOH . O 5 HOH F 15 215 81 HOH HOH . O 5 HOH F 16 216 129 HOH HOH . O 5 HOH F 17 217 83 HOH HOH . O 5 HOH F 18 218 46 HOH HOH . O 5 HOH F 19 219 175 HOH HOH . O 5 HOH F 20 220 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 17.071 11.525 11.372 1 79.8 ? C1 NAG 1101 A 1 HETATM 2 C C2 NAG . . . G 3 15.827 10.674 11.644 1 80.71 ? C2 NAG 1101 A 1 HETATM 3 C C3 NAG . . . G 3 16.095 9.262 11.1 1 83.85 ? C3 NAG 1101 A 1 HETATM 4 C C4 NAG . . . G 3 16.442 9.325 9.612 1 82.74 ? C4 NAG 1101 A 1 HETATM 5 C C5 NAG . . . G 3 17.588 10.287 9.392 1 79.84 ? C5 NAG 1101 A 1 HETATM 6 C C6 NAG . . . G 3 17.754 10.64 7.933 1 79.27 ? C6 NAG 1101 A 1 HETATM 7 C C7 NAG . . . G 3 14.31 11.039 13.578 1 72.84 ? C7 NAG 1101 A 1 HETATM 8 C C8 NAG . . . G 3 14.031 10.729 15.029 1 67.45 ? C8 NAG 1101 A 1 HETATM 9 N N2 NAG . . . G 3 15.49 10.638 13.069 1 77.23 ? N2 NAG 1101 A 1 HETATM 10 O O3 NAG . . . G 3 14.941 8.449 11.295 1 80.94 ? O3 NAG 1101 A 1 HETATM 11 O O4 NAG . . . G 3 16.864 8.077 9.077 1 82.6 ? O4 NAG 1101 A 1 HETATM 12 O O5 NAG . . . G 3 17.344 11.526 9.986 1 77.02 ? O5 NAG 1101 A 1 HETATM 13 O O6 NAG . . . G 3 19.057 10.175 7.699 1 82.21 ? O6 NAG 1101 A 1 HETATM 14 O O7 NAG . . . G 3 13.455 11.591 12.895 1 67.02 ? O7 NAG 1101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #