data_6RVD # _model_server_result.job_id 1i3Iz2ka3V9xMrTAKuFsrg _model_server_result.datetime_utc '2025-07-03 17:35:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":201}' # _entry.id 6RVD # _exptl.entry_id 6RVD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RVD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG G 1805 NAG 3 n D NAG 2 D 2 NAG G 1806 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 234 A CYS 234 1_555 A SG CYS 327 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 296 A CYS 296 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 203 B CYS 203 1_555 B SG CYS 226 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 234 B CYS 234 1_555 B SG CYS 327 B CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 B SG CYS 296 B CYS 296 1_555 B SG CYS 304 B CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 J C1 NAG . A NAG 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 312 A ASN 312 1_555 F C1 NAG . A NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 349 A ASN 349 1_555 G C1 NAG . A NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 414 A ASN 414 1_555 H C1 NAG . A NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 875 A ASN 875 1_555 I C1 NAG . A NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 A ND2 ASN 1000 A ASN 1000 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 B ND2 ASN 414 B ASN 414 1_555 M C1 NAG . B NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B ND2 ASN 1000 B ASN 1000 1_555 N C1 NAG . B NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale9 C N CYS 1 C CYS 24 1_555 O C1 PLM . C PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale10 C C GLY 174 C GLY 197 1_555 P O1 CLR . C CLR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 C OE1 GLU 66 C GLU 89 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 C OE2 GLU 66 C GLU 89 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 C OE2 GLU 67 C GLU 90 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 C OE1 GLU 67 C GLU 90 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 C OE2 GLU 67 C GLU 90 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc6 C OD1 ASP 72 C ASP 95 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 C OD2 ASP 72 C ASP 95 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 C O THR 102 C THR 125 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc9 C OE1 GLU 103 C GLU 126 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 C OE2 GLU 103 C GLU 126 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc11 C OE2 GLU 103 C GLU 126 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 C OD1 ASP 106 C ASP 129 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc13 C OD2 ASP 108 C ASP 131 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc14 C NE2 HIS 117 C HIS 140 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc15 C OD1 ASP 124 C ASP 147 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc16 C OD2 ASP 124 C ASP 147 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc17 C OE1 GLU 153 C GLU 176 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc18 C ND1 HIS 159 C HIS 182 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 365 n n C1 O2 PLM doub 366 n n C1 C2 PLM sing 367 n n O1 H PLM sing 368 n n C2 C3 PLM sing 369 n n C2 H21 PLM sing 370 n n C2 H22 PLM sing 371 n n C3 C4 PLM sing 372 n n C3 H31 PLM sing 373 n n C3 H32 PLM sing 374 n n C4 C5 PLM sing 375 n n C4 H41 PLM sing 376 n n C4 H42 PLM sing 377 n n C5 C6 PLM sing 378 n n C5 H51 PLM sing 379 n n C5 H52 PLM sing 380 n n C6 C7 PLM sing 381 n n C6 H61 PLM sing 382 n n C6 H62 PLM sing 383 n n C7 C8 PLM sing 384 n n C7 H71 PLM sing 385 n n C7 H72 PLM sing 386 n n C8 C9 PLM sing 387 n n C8 H81 PLM sing 388 n n C8 H82 PLM sing 389 n n C9 CA PLM sing 390 n n C9 H91 PLM sing 391 n n C9 H92 PLM sing 392 n n CA CB PLM sing 393 n n CA HA1 PLM sing 394 n n CA HA2 PLM sing 395 n n CB CC PLM sing 396 n n CB HB1 PLM sing 397 n n CB HB2 PLM sing 398 n n CC CD PLM sing 399 n n CC HC1 PLM sing 400 n n CC HC2 PLM sing 401 n n CD CE PLM sing 402 n n CD HD1 PLM sing 403 n n CD HD2 PLM sing 404 n n CE CF PLM sing 405 n n CE HE1 PLM sing 406 n n CE HE2 PLM sing 407 n n CF CG PLM sing 408 n n CF HF1 PLM sing 409 n n CF HF2 PLM sing 410 n n CG HG1 PLM sing 411 n n CG HG2 PLM sing 412 n n CG HG3 PLM sing 413 n n # _atom_sites.entry_id 6RVD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CLR A 1 1501 3 CLR CLR . F 5 NAG A 1 1502 1801 NAG NAG . G 5 NAG A 1 1503 1802 NAG NAG . H 5 NAG A 1 1504 1803 NAG NAG . I 5 NAG A 1 1505 1804 NAG NAG . J 5 NAG A 1 1508 1807 NAG NAG . K 4 CLR B 1 1501 1 CLR CLR . L 4 CLR B 1 1502 2 CLR CLR . M 5 NAG B 1 1503 1808 NAG NAG . N 5 NAG B 1 1504 1809 NAG NAG . O 6 PLM C 1 201 23 PLM PLM . P 4 CLR C 1 202 198 CLR CLR . Q 7 ZN C 1 203 1 ZN ZN . R 8 CA C 1 204 1 CA CA . S 8 CA C 1 205 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . O 6 137.384 147.132 105.287 1 72.91 ? C1 PLM 201 C 1 HETATM 2 O O2 PLM . . . O 6 137.321 146.732 104.107 1 72.91 ? O2 PLM 201 C 1 HETATM 3 C C2 PLM . . . O 6 138.655 146.857 106.072 1 72.91 ? C2 PLM 201 C 1 HETATM 4 C C3 PLM . . . O 6 139.731 147.882 105.895 1 72.91 ? C3 PLM 201 C 1 HETATM 5 C C4 PLM . . . O 6 140.979 147.561 106.698 1 72.91 ? C4 PLM 201 C 1 HETATM 6 C C5 PLM . . . O 6 141.617 146.238 106.35 1 72.91 ? C5 PLM 201 C 1 HETATM 7 C C6 PLM . . . O 6 142.871 145.93 107.13 1 72.91 ? C6 PLM 201 C 1 HETATM 8 C C7 PLM . . . O 6 142.674 145.871 108.625 1 72.91 ? C7 PLM 201 C 1 HETATM 9 C C8 PLM . . . O 6 143.928 145.559 109.404 1 72.91 ? C8 PLM 201 C 1 HETATM 10 C C9 PLM . . . O 6 143.732 145.501 110.899 1 72.91 ? C9 PLM 201 C 1 HETATM 11 C CA PLM . . . O 6 144.985 145.176 111.675 1 72.91 ? CA PLM 201 C 1 HETATM 12 C CB PLM . . . O 6 144.788 145.116 113.17 1 72.91 ? CB PLM 201 C 1 HETATM 13 C CC PLM . . . O 6 146.039 144.782 113.947 1 72.91 ? CC PLM 201 C 1 HETATM 14 C CD PLM . . . O 6 147.167 145.767 113.758 1 72.91 ? CD PLM 201 C 1 HETATM 15 C CE PLM . . . O 6 148.414 145.438 114.54 1 72.91 ? CE PLM 201 C 1 HETATM 16 C CF PLM . . . O 6 149.543 146.419 114.354 1 72.91 ? CF PLM 201 C 1 HETATM 17 C CG PLM . . . O 6 150.018 146.537 112.926 1 72.91 ? CG PLM 201 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #