data_6RVD # _model_server_result.job_id G_LTyBDeK2_3JNWhL1DFag _model_server_result.datetime_utc '2025-07-02 23:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rvd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":202}' # _entry.id 6RVD # _exptl.entry_id 6RVD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RVD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RVD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N ? 4 L N N ? 4 P N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG G 1805 NAG 3 n D NAG 2 D 2 NAG G 1806 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 234 A CYS 234 1_555 A SG CYS 327 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 296 A CYS 296 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 203 B CYS 203 1_555 B SG CYS 226 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 234 B CYS 234 1_555 B SG CYS 327 B CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 B SG CYS 296 B CYS 296 1_555 B SG CYS 304 B CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 J C1 NAG . A NAG 1508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 312 A ASN 312 1_555 F C1 NAG . A NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 349 A ASN 349 1_555 G C1 NAG . A NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 414 A ASN 414 1_555 H C1 NAG . A NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 875 A ASN 875 1_555 I C1 NAG . A NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 A ND2 ASN 1000 A ASN 1000 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 B ND2 ASN 414 B ASN 414 1_555 M C1 NAG . B NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 B ND2 ASN 1000 B ASN 1000 1_555 N C1 NAG . B NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale9 C N CYS 1 C CYS 24 1_555 O C1 PLM . C PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale10 C C GLY 174 C GLY 197 1_555 P O1 CLR . C CLR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 C OE1 GLU 66 C GLU 89 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 C OE2 GLU 66 C GLU 89 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 C OE2 GLU 67 C GLU 90 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 C OE1 GLU 67 C GLU 90 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 C OE2 GLU 67 C GLU 90 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc6 C OD1 ASP 72 C ASP 95 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc7 C OD2 ASP 72 C ASP 95 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 C O THR 102 C THR 125 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc9 C OE1 GLU 103 C GLU 126 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 C OE2 GLU 103 C GLU 126 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc11 C OE2 GLU 103 C GLU 126 1_555 S CA CA . C CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc12 C OD1 ASP 106 C ASP 129 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc13 C OD2 ASP 108 C ASP 131 1_555 R CA CA . C CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc14 C NE2 HIS 117 C HIS 140 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc15 C OD1 ASP 124 C ASP 147 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc16 C OD2 ASP 124 C ASP 147 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc17 C OE1 GLU 153 C GLU 176 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc18 C ND1 HIS 159 C HIS 182 1_555 Q ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6RVD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 CLR A 1 1501 3 CLR CLR . F 5 NAG A 1 1502 1801 NAG NAG . G 5 NAG A 1 1503 1802 NAG NAG . H 5 NAG A 1 1504 1803 NAG NAG . I 5 NAG A 1 1505 1804 NAG NAG . J 5 NAG A 1 1508 1807 NAG NAG . K 4 CLR B 1 1501 1 CLR CLR . L 4 CLR B 1 1502 2 CLR CLR . M 5 NAG B 1 1503 1808 NAG NAG . N 5 NAG B 1 1504 1809 NAG NAG . O 6 PLM C 1 201 23 PLM PLM . P 4 CLR C 1 202 198 CLR CLR . Q 7 ZN C 1 203 1 ZN ZN . R 8 CA C 1 204 1 CA CA . S 8 CA C 1 205 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . P 4 98.032 156.565 103.535 1 91.83 ? C1 CLR 202 C 1 HETATM 2 C C2 CLR . . . P 4 96.54 156.604 103.829 1 91.83 ? C2 CLR 202 C 1 HETATM 3 C C3 CLR . . . P 4 95.908 157.927 103.447 1 91.83 ? C3 CLR 202 C 1 HETATM 4 C C4 CLR . . . P 4 96.155 158.209 101.972 1 91.83 ? C4 CLR 202 C 1 HETATM 5 C C5 CLR . . . P 4 97.63 158.109 101.69 1 91.83 ? C5 CLR 202 C 1 HETATM 6 C C6 CLR . . . P 4 98.226 159.154 101.112 1 91.83 ? C6 CLR 202 C 1 HETATM 7 C C7 CLR . . . P 4 99.666 159.112 100.678 1 91.83 ? C7 CLR 202 C 1 HETATM 8 C C8 CLR . . . P 4 100.277 157.735 100.736 1 91.83 ? C8 CLR 202 C 1 HETATM 9 C C9 CLR . . . P 4 99.875 157.062 102.029 1 91.83 ? C9 CLR 202 C 1 HETATM 10 C C10 CLR . . . P 4 98.37 156.857 102.089 1 91.83 ? C10 CLR 202 C 1 HETATM 11 C C11 CLR . . . P 4 100.659 155.755 102.256 1 91.83 ? C11 CLR 202 C 1 HETATM 12 C C12 CLR . . . P 4 102.18 155.967 102.176 1 91.83 ? C12 CLR 202 C 1 HETATM 13 C C13 CLR . . . P 4 102.57 156.594 100.85 1 91.83 ? C13 CLR 202 C 1 HETATM 14 C C14 CLR . . . P 4 101.784 157.88 100.734 1 91.83 ? C14 CLR 202 C 1 HETATM 15 C C15 CLR . . . P 4 102.415 158.706 99.63 1 91.83 ? C15 CLR 202 C 1 HETATM 16 C C16 CLR . . . P 4 103.79 158.096 99.464 1 91.83 ? C16 CLR 202 C 1 HETATM 17 C C17 CLR . . . P 4 103.979 157.174 100.668 1 91.83 ? C17 CLR 202 C 1 HETATM 18 C C18 CLR . . . P 4 102.302 155.632 99.699 1 91.83 ? C18 CLR 202 C 1 HETATM 19 C C19 CLR . . . P 4 97.931 155.739 101.157 1 91.83 ? C19 CLR 202 C 1 HETATM 20 C C20 CLR . . . P 4 105.27 156.368 100.438 1 91.83 ? C20 CLR 202 C 1 HETATM 21 C C21 CLR . . . P 4 105.675 155.421 101.553 1 91.83 ? C21 CLR 202 C 1 HETATM 22 C C22 CLR . . . P 4 106.386 157.382 100.177 1 91.83 ? C22 CLR 202 C 1 HETATM 23 C C23 CLR . . . P 4 107.763 156.899 99.753 1 91.83 ? C23 CLR 202 C 1 HETATM 24 C C24 CLR . . . P 4 108.565 158.182 99.57 1 91.83 ? C24 CLR 202 C 1 HETATM 25 C C25 CLR . . . P 4 109.998 157.985 99.115 1 91.83 ? C25 CLR 202 C 1 HETATM 26 C C26 CLR . . . P 4 110.819 157.165 100.085 1 91.83 ? C26 CLR 202 C 1 HETATM 27 C C27 CLR . . . P 4 110.016 157.325 97.751 1 91.83 ? C27 CLR 202 C 1 HETATM 28 O O1 CLR . . . P 4 94.497 157.926 103.703 1 91.83 ? O1 CLR 202 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #