data_6RVF
#
_model_server_result.job_id            HVNJo5ex1biTIaPrjevs_A 
_model_server_result.datetime_utc      '2024-11-05 01:29:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6RVF 
#
_exptl.entry_id    6RVF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              285.083 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[1,1-bis(oxidanyl)-3~{H}-2,1$l^{4}-benzoxaborol-6-yl]-3-phenyl-urea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.18 
_cell.angle_gamma         90 
_cell.entry_id            6RVF 
_cell.length_a            42.38 
_cell.length_b            41.38 
_cell.length_c            71.94 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 96 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc2 A NE2 HIS 98 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc3 A ND1 HIS 121 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C O2 KKH . A KKH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'C14 H14 B N2 O4' 
_chem_comp.formula_weight    285.083 
_chem_comp.id                KKH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[1,1-bis(oxidanyl)-3~{H}-2,1$l^{4}-benzoxaborol-6-yl]-3-phenyl-urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 KKH doub 173 n y 
C11 C12 KKH sing 174 n y 
C10 C9 KKH sing 175 n y 
C12 C13 KKH doub 176 n y 
C9 N2 KKH sing 177 n n 
C9 C14 KKH doub 178 n y 
N2 C8 KKH sing 179 n n 
N1 C8 KKH sing 180 n n 
N1 C3 KKH sing 181 n n 
C8 O4 KKH doub 182 n n 
C13 C14 KKH sing 183 n y 
C3 C4 KKH doub 184 n y 
C3 C2 KKH sing 185 n y 
C4 C5 KKH sing 186 n y 
C2 C1 KKH doub 187 n y 
C5 C6 KKH doub 188 n y 
O2 B1 KKH sing 189 n n 
C6 C1 KKH sing 190 n y 
C6 C7 KKH sing 191 n n 
C1 B1 KKH sing 192 n n 
O1 C7 KKH sing 193 n n 
O1 B1 KKH sing 194 n n 
B1 O3 KKH sing 195 n n 
C5 H1 KKH sing 196 n n 
C4 H2 KKH sing 197 n n 
C2 H3 KKH sing 198 n n 
C7 H4 KKH sing 199 n n 
C7 H5 KKH sing 200 n n 
O3 H6 KKH sing 201 n n 
C11 H7 KKH sing 202 n n 
C10 H8 KKH sing 203 n n 
C12 H9 KKH sing 204 n n 
C13 H10 KKH sing 205 n n 
C14 H11 KKH sing 206 n n 
N1 H12 KKH sing 207 n n 
N2 H13 KKH sing 208 n n 
O2 H14 KKH sing 209 n n 
#
_atom_sites.entry_id                     6RVF 
_atom_sites.fract_transf_matrix[1][1]    0.023596 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005962 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 KKH A 1 302 263 KKH UNK . 
D 4 HOH A 1 401 359 HOH HOH . 
D 4 HOH A 2 402 368 HOH HOH . 
D 4 HOH A 3 403 327 HOH HOH . 
D 4 HOH A 4 404 393 HOH HOH . 
D 4 HOH A 5 405 320 HOH HOH . 
D 4 HOH A 6 406 325 HOH HOH . 
D 4 HOH A 7 407 408 HOH HOH . 
D 4 HOH A 8 408 379 HOH HOH . 
D 4 HOH A 9 409 391 HOH HOH . 
D 4 HOH A 10 410 314 HOH HOH . 
D 4 HOH A 11 411 390 HOH HOH . 
D 4 HOH A 12 412 392 HOH HOH . 
D 4 HOH A 13 413 351 HOH HOH . 
D 4 HOH A 14 414 369 HOH HOH . 
D 4 HOH A 15 415 370 HOH HOH . 
D 4 HOH A 16 416 343 HOH HOH . 
D 4 HOH A 17 417 301 HOH HOH . 
D 4 HOH A 18 418 328 HOH HOH . 
D 4 HOH A 19 419 315 HOH HOH . 
D 4 HOH A 20 420 354 HOH HOH . 
D 4 HOH A 21 421 362 HOH HOH . 
D 4 HOH A 22 422 322 HOH HOH . 
D 4 HOH A 23 423 361 HOH HOH . 
D 4 HOH A 24 424 366 HOH HOH . 
D 4 HOH A 25 425 342 HOH HOH . 
D 4 HOH A 26 426 363 HOH HOH . 
D 4 HOH A 27 427 316 HOH HOH . 
D 4 HOH A 28 428 335 HOH HOH . 
D 4 HOH A 29 429 382 HOH HOH . 
D 4 HOH A 30 430 373 HOH HOH . 
D 4 HOH A 31 431 377 HOH HOH . 
D 4 HOH A 32 432 346 HOH HOH . 
D 4 HOH A 33 433 374 HOH HOH . 
D 4 HOH A 34 434 305 HOH HOH . 
D 4 HOH A 35 435 348 HOH HOH . 
D 4 HOH A 36 436 345 HOH HOH . 
D 4 HOH A 37 437 350 HOH HOH . 
D 4 HOH A 38 438 353 HOH HOH . 
D 4 HOH A 39 439 306 HOH HOH . 
D 4 HOH A 40 440 352 HOH HOH . 
D 4 HOH A 41 441 360 HOH HOH . 
D 4 HOH A 42 442 333 HOH HOH . 
D 4 HOH A 43 443 338 HOH HOH . 
D 4 HOH A 44 444 318 HOH HOH . 
D 4 HOH A 45 445 323 HOH HOH . 
D 4 HOH A 46 446 394 HOH HOH . 
D 4 HOH A 47 447 404 HOH HOH . 
D 4 HOH A 48 448 380 HOH HOH . 
D 4 HOH A 49 449 403 HOH HOH . 
D 4 HOH A 50 450 347 HOH HOH . 
D 4 HOH A 51 451 311 HOH HOH . 
D 4 HOH A 52 452 321 HOH HOH . 
D 4 HOH A 53 453 309 HOH HOH . 
D 4 HOH A 54 454 355 HOH HOH . 
D 4 HOH A 55 455 317 HOH HOH . 
D 4 HOH A 56 456 349 HOH HOH . 
D 4 HOH A 57 457 341 HOH HOH . 
D 4 HOH A 58 458 336 HOH HOH . 
D 4 HOH A 59 459 312 HOH HOH . 
D 4 HOH A 60 460 303 HOH HOH . 
D 4 HOH A 61 461 357 HOH HOH . 
D 4 HOH A 62 462 302 HOH HOH . 
D 4 HOH A 63 463 304 HOH HOH . 
D 4 HOH A 64 464 395 HOH HOH . 
D 4 HOH A 65 465 324 HOH HOH . 
D 4 HOH A 66 466 376 HOH HOH . 
D 4 HOH A 67 467 334 HOH HOH . 
D 4 HOH A 68 468 330 HOH HOH . 
D 4 HOH A 69 469 313 HOH HOH . 
D 4 HOH A 70 470 405 HOH HOH . 
D 4 HOH A 71 471 396 HOH HOH . 
D 4 HOH A 72 472 378 HOH HOH . 
D 4 HOH A 73 473 310 HOH HOH . 
D 4 HOH A 74 474 383 HOH HOH . 
D 4 HOH A 75 475 340 HOH HOH . 
D 4 HOH A 76 476 367 HOH HOH . 
D 4 HOH A 77 477 329 HOH HOH . 
D 4 HOH A 78 478 399 HOH HOH . 
D 4 HOH A 79 479 319 HOH HOH . 
D 4 HOH A 80 480 358 HOH HOH . 
D 4 HOH A 81 481 375 HOH HOH . 
D 4 HOH A 82 482 331 HOH HOH . 
D 4 HOH A 83 483 381 HOH HOH . 
D 4 HOH A 84 484 307 HOH HOH . 
D 4 HOH A 85 485 389 HOH HOH . 
D 4 HOH A 86 486 398 HOH HOH . 
D 4 HOH A 87 487 344 HOH HOH . 
D 4 HOH A 88 488 339 HOH HOH . 
D 4 HOH A 89 489 386 HOH HOH . 
D 4 HOH A 90 490 337 HOH HOH . 
D 4 HOH A 91 491 356 HOH HOH . 
D 4 HOH A 92 492 371 HOH HOH . 
D 4 HOH A 93 493 332 HOH HOH . 
D 4 HOH A 94 494 400 HOH HOH . 
D 4 HOH A 95 495 387 HOH HOH . 
D 4 HOH A 96 496 397 HOH HOH . 
D 4 HOH A 97 497 308 HOH HOH . 
D 4 HOH A 98 498 406 HOH HOH . 
D 4 HOH A 99 499 326 HOH HOH . 
D 4 HOH A 100 500 401 HOH HOH . 
D 4 HOH A 101 501 384 HOH HOH . 
D 4 HOH A 102 502 407 HOH HOH . 
D 4 HOH A 103 503 385 HOH HOH . 
D 4 HOH A 104 504 365 HOH HOH . 
D 4 HOH A 105 505 388 HOH HOH . 
D 4 HOH A 106 506 402 HOH HOH . 
D 4 HOH A 107 507 364 HOH HOH . 
D 4 HOH A 108 508 372 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 KKH . . . C 3 -6.423 4.58 15.455 1 20.96 ? C5 KKH 302 A 1 
HETATM 2 C C4 KKH . . . C 3 -5.264 5.15 14.934 1 21.27 ? C4 KKH 302 A 1 
HETATM 3 C C3 KKH . . . C 3 -4.093 4.415 14.929 1 23.09 ? C3 KKH 302 A 1 
HETATM 4 C C2 KKH . . . C 3 -4.084 3.116 15.44 1 21.48 ? C2 KKH 302 A 1 
HETATM 5 C C1 KKH . . . C 3 -5.241 2.513 15.966 1 20.35 ? C1 KKH 302 A 1 
HETATM 6 C C6 KKH . . . C 3 -6.409 3.304 15.959 1 21.03 ? C6 KKH 302 A 1 
HETATM 7 C C7 KKH . . . C 3 -7.528 2.496 16.549 1 18.02 ? C7 KKH 302 A 1 
HETATM 8 O O1 KKH . . . C 3 -7.063 1.158 16.508 1 17.73 ? O1 KKH 302 A 1 
HETATM 9 O O3 KKH . . . C 3 -5.24 0.946 18.036 1 16.32 ? O3 KKH 302 A 1 
HETATM 10 C C11 KKH . . . C 3 0.868 9.391 12.874 1 34.14 ? C11 KKH 302 A 1 
HETATM 11 C C10 KKH . . . C 3 0.163 8.188 12.881 1 33.28 ? C10 KKH 302 A 1 
HETATM 12 C C12 KKH . . . C 3 0.696 10.3 13.897 1 34.16 ? C12 KKH 302 A 1 
HETATM 13 C C13 KKH . . . C 3 -0.178 10.022 14.925 1 32.95 ? C13 KKH 302 A 1 
HETATM 14 C C14 KKH . . . C 3 -0.886 8.824 14.941 1 32.56 ? C14 KKH 302 A 1 
HETATM 15 C C9 KKH . . . C 3 -0.703 7.906 13.911 1 31.74 ? C9 KKH 302 A 1 
HETATM 16 O O4 KKH . . . C 3 -3.304 7.206 15.006 1 28.81 ? O4 KKH 302 A 1 
HETATM 17 N N1 KKH . . . C 3 -2.896 5.014 14.457 1 25.34 ? N1 KKH 302 A 1 
HETATM 18 N N2 KKH . . . C 3 -1.345 6.626 13.988 1 31.45 ? N2 KKH 302 A 1 
HETATM 19 C C8 KKH . . . C 3 -2.561 6.346 14.52 1 28.91 ? C8 KKH 302 A 1 
HETATM 20 B B1 KKH . . . C 3 -5.592 1.089 16.62 1 19.08 ? B1 KKH 302 A 1 
HETATM 21 O O2 KKH . . . C 3 -5.146 -0.115 15.888 1 16.31 ? O2 KKH 302 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#