data_6RW2 # _model_server_result.job_id QIQ8Ywqf3Gt43O6ebz36Cg _model_server_result.datetime_utc '2024-12-26 11:04:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rw2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6RW2 # _exptl.entry_id 6RW2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.313 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RW2 _cell.length_a 42.09 _cell.length_b 113.68 _cell.length_c 130.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RW2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 70 1_555 A SG CYS 180 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf2 A SG CYS 97 A CYS 105 1_555 A SG CYS 107 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 193 A CYS 201 1_555 A SG CYS 193 A CYS 201 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? covale ? covale1 B SG CYS 4 B CYS 2 1_555 D C16 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? covale ? covale2 B SG CYS 11 B CYS 9 1_555 D C25 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale3 B SG CYS 18 B CYS 16 1_555 D C19 29N . B 29N 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? # _chem_comp.formula 'C12 H21 N3 O3' _chem_comp.formula_weight 255.313 _chem_comp.id 29N _chem_comp.mon_nstd_flag . _chem_comp.name "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1''-(1,3,5-triazinane-1,3,5-triyl)triprop-2-en-1-one, bound form" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C14 29N sing 1 n n O15 C13 29N doub 2 n n C14 C13 29N sing 3 n n C13 N3 29N sing 4 n n C16 C8 29N sing 5 n n C8 C7 29N sing 6 n n N3 C2 29N sing 7 n n N3 C4 29N sing 8 n n C2 N1 29N sing 9 n n C7 N1 29N sing 10 n n C7 O9 29N doub 11 n n N1 C6 29N sing 12 n n C4 N5 29N sing 13 n n C19 C11 29N sing 14 n n N5 C6 29N sing 15 n n N5 C10 29N sing 16 n n C11 C10 29N sing 17 n n C10 O12 29N doub 18 n n C2 H1 29N sing 19 n n C2 H2 29N sing 20 n n C4 H3 29N sing 21 n n C4 H4 29N sing 22 n n C6 H5 29N sing 23 n n C6 H6 29N sing 24 n n C8 H7 29N sing 25 n n C8 H8 29N sing 26 n n C11 H9 29N sing 27 n n C11 H10 29N sing 28 n n C14 H11 29N sing 29 n n C14 H12 29N sing 30 n n C16 H13 29N sing 31 n n C16 H14 29N sing 32 n n C16 H15 29N sing 33 n n C19 H16 29N sing 34 n n C19 H17 29N sing 35 n n C19 H18 29N sing 36 n n C25 H19 29N sing 37 n n C25 H20 29N sing 38 n n C25 H21 29N sing 39 n n # _atom_sites.entry_id 6RW2 _atom_sites.fract_transf_matrix[1][1] 0.023759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 4 29N B 1 101 1 29N DRG . E 5 HOH A 1 401 29 HOH HOH . E 5 HOH A 2 402 39 HOH HOH . E 5 HOH A 3 403 30 HOH HOH . E 5 HOH A 4 404 18 HOH HOH . E 5 HOH A 5 405 43 HOH HOH . E 5 HOH A 6 406 20 HOH HOH . E 5 HOH A 7 407 9 HOH HOH . E 5 HOH A 8 408 27 HOH HOH . E 5 HOH A 9 409 15 HOH HOH . E 5 HOH A 10 410 2 HOH HOH . E 5 HOH A 11 411 8 HOH HOH . E 5 HOH A 12 412 31 HOH HOH . E 5 HOH A 13 413 21 HOH HOH . E 5 HOH A 14 414 22 HOH HOH . E 5 HOH A 15 415 10 HOH HOH . E 5 HOH A 16 416 1 HOH HOH . E 5 HOH A 17 417 24 HOH HOH . E 5 HOH A 18 418 28 HOH HOH . E 5 HOH A 19 419 36 HOH HOH . E 5 HOH A 20 420 42 HOH HOH . E 5 HOH A 21 421 32 HOH HOH . E 5 HOH A 22 422 14 HOH HOH . E 5 HOH A 23 423 16 HOH HOH . E 5 HOH A 24 424 11 HOH HOH . E 5 HOH A 25 425 12 HOH HOH . E 5 HOH A 26 426 6 HOH HOH . E 5 HOH A 27 427 37 HOH HOH . E 5 HOH A 28 428 17 HOH HOH . E 5 HOH A 29 429 4 HOH HOH . E 5 HOH A 30 430 41 HOH HOH . E 5 HOH A 31 431 26 HOH HOH . E 5 HOH A 32 432 44 HOH HOH . E 5 HOH A 33 433 40 HOH HOH . E 5 HOH A 34 434 23 HOH HOH . E 5 HOH A 35 435 34 HOH HOH . E 5 HOH A 36 436 3 HOH HOH . E 5 HOH A 37 437 7 HOH HOH . E 5 HOH A 38 438 13 HOH HOH . E 5 HOH A 39 439 35 HOH HOH . E 5 HOH A 40 440 33 HOH HOH . F 5 HOH B 1 201 25 HOH HOH . F 5 HOH B 2 202 38 HOH HOH . F 5 HOH B 3 203 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 29N . . . D 4 25.682 18.601 32.221 1 42.65 ? N1 29N 101 B 1 HETATM 2 C C2 29N . . . D 4 26.438 19.595 31.495 1 40.7 ? C2 29N 101 B 1 HETATM 3 N N3 29N . . . D 4 25.624 20.789 31.664 1 44.68 ? N3 29N 101 B 1 HETATM 4 C C4 29N . . . D 4 25.514 21.232 33.072 1 41.45 ? C4 29N 101 B 1 HETATM 5 N N5 29N . . . D 4 24.864 20.124 33.734 1 43.09 ? N5 29N 101 B 1 HETATM 6 C C6 29N . . . D 4 25.677 18.914 33.645 1 44.11 ? C6 29N 101 B 1 HETATM 7 C C7 29N . . . D 4 24.977 17.596 31.671 1 39.81 ? C7 29N 101 B 1 HETATM 8 C C8 29N . . . D 4 24.992 17.356 30.187 1 42.96 ? C8 29N 101 B 1 HETATM 9 O O9 29N . . . D 4 24.317 16.837 32.325 1 37.42 ? O9 29N 101 B 1 HETATM 10 C C10 29N . . . D 4 23.635 20.194 34.239 1 46.26 ? C10 29N 101 B 1 HETATM 11 C C11 29N . . . D 4 23.138 18.936 34.898 1 48.85 ? C11 29N 101 B 1 HETATM 12 O O12 29N . . . D 4 22.905 21.19 34.154 1 49.42 ? O12 29N 101 B 1 HETATM 13 C C13 29N . . . D 4 25.023 21.384 30.615 1 45.33 ? C13 29N 101 B 1 HETATM 14 C C14 29N . . . D 4 24.156 22.6 30.928 1 40.81 ? C14 29N 101 B 1 HETATM 15 O O15 29N . . . D 4 25.151 20.991 29.46 1 40.37 ? O15 29N 101 B 1 HETATM 16 C C16 29N . . . D 4 26.139 16.432 29.859 1 41.75 ? C16 29N 101 B 1 HETATM 17 C C19 29N . . . D 4 21.649 19.01 35.165 1 51.82 ? C19 29N 101 B 1 HETATM 18 C C25 29N . . . D 4 23.73 23.296 29.67 1 37.46 ? C25 29N 101 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #