data_6RWV # _model_server_result.job_id ONUZ4Cki-w2udQ_U9CuCmw _model_server_result.datetime_utc '2024-11-20 11:38:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rwv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6RWV # _exptl.entry_id 6RWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.558 _cell.angle_gamma 90 _cell.entry_id 6RWV _cell.length_a 48.303 _cell.length_b 76.723 _cell.length_c 52.258 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 122 A GLU 122 1_555 L K K . A K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc2 A OE1 GLU 186 A GLU 186 1_555 K K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc3 A OE2 GLU 186 A GLU 186 1_555 K K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.36 ? metalc ? metalc4 A O GLY 231 A GLY 231 1_555 K K K . A K 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.235 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6RWV _atom_sites.fract_transf_matrix[1][1] 0.020703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006155 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 402 GOL GOL . D 2 GOL A 1 403 403 GOL GOL . E 2 GOL A 1 404 404 GOL GOL . F 2 GOL A 1 405 405 GOL GOL . G 2 GOL A 1 406 406 GOL GOL . H 2 GOL A 1 407 407 GOL GOL . I 3 PO4 A 1 408 601 PO4 PO4 . J 3 PO4 A 1 409 602 PO4 PO4 . K 4 K A 1 410 501 K K . L 4 K A 1 411 502 K K . M 5 HOH A 1 501 275 HOH HOH . M 5 HOH A 2 502 315 HOH HOH . M 5 HOH A 3 503 147 HOH HOH . M 5 HOH A 4 504 211 HOH HOH . M 5 HOH A 5 505 212 HOH HOH . M 5 HOH A 6 506 77 HOH HOH . M 5 HOH A 7 507 184 HOH HOH . M 5 HOH A 8 508 114 HOH HOH . M 5 HOH A 9 509 213 HOH HOH . M 5 HOH A 10 510 241 HOH HOH . M 5 HOH A 11 511 144 HOH HOH . M 5 HOH A 12 512 250 HOH HOH . M 5 HOH A 13 513 178 HOH HOH . M 5 HOH A 14 514 191 HOH HOH . M 5 HOH A 15 515 285 HOH HOH . M 5 HOH A 16 516 263 HOH HOH . M 5 HOH A 17 517 102 HOH HOH . M 5 HOH A 18 518 248 HOH HOH . M 5 HOH A 19 519 72 HOH HOH . M 5 HOH A 20 520 135 HOH HOH . M 5 HOH A 21 521 192 HOH HOH . M 5 HOH A 22 522 74 HOH HOH . M 5 HOH A 23 523 306 HOH HOH . M 5 HOH A 24 524 75 HOH HOH . M 5 HOH A 25 525 244 HOH HOH . M 5 HOH A 26 526 292 HOH HOH . M 5 HOH A 27 527 96 HOH HOH . M 5 HOH A 28 528 154 HOH HOH . M 5 HOH A 29 529 209 HOH HOH . M 5 HOH A 30 530 28 HOH HOH . M 5 HOH A 31 531 13 HOH HOH . M 5 HOH A 32 532 107 HOH HOH . M 5 HOH A 33 533 79 HOH HOH . M 5 HOH A 34 534 197 HOH HOH . M 5 HOH A 35 535 29 HOH HOH . M 5 HOH A 36 536 230 HOH HOH . M 5 HOH A 37 537 119 HOH HOH . M 5 HOH A 38 538 39 HOH HOH . M 5 HOH A 39 539 49 HOH HOH . M 5 HOH A 40 540 83 HOH HOH . M 5 HOH A 41 541 293 HOH HOH . M 5 HOH A 42 542 310 HOH HOH . M 5 HOH A 43 543 172 HOH HOH . M 5 HOH A 44 544 186 HOH HOH . M 5 HOH A 45 545 12 HOH HOH . M 5 HOH A 46 546 277 HOH HOH . M 5 HOH A 47 547 10 HOH HOH . M 5 HOH A 48 548 100 HOH HOH . M 5 HOH A 49 549 188 HOH HOH . M 5 HOH A 50 550 138 HOH HOH . M 5 HOH A 51 551 30 HOH HOH . M 5 HOH A 52 552 19 HOH HOH . M 5 HOH A 53 553 32 HOH HOH . M 5 HOH A 54 554 54 HOH HOH . M 5 HOH A 55 555 131 HOH HOH . M 5 HOH A 56 556 93 HOH HOH . M 5 HOH A 57 557 286 HOH HOH . M 5 HOH A 58 558 201 HOH HOH . M 5 HOH A 59 559 5 HOH HOH . M 5 HOH A 60 560 187 HOH HOH . M 5 HOH A 61 561 168 HOH HOH . M 5 HOH A 62 562 20 HOH HOH . M 5 HOH A 63 563 259 HOH HOH . M 5 HOH A 64 564 221 HOH HOH . M 5 HOH A 65 565 35 HOH HOH . M 5 HOH A 66 566 194 HOH HOH . M 5 HOH A 67 567 27 HOH HOH . M 5 HOH A 68 568 81 HOH HOH . M 5 HOH A 69 569 88 HOH HOH . M 5 HOH A 70 570 41 HOH HOH . M 5 HOH A 71 571 91 HOH HOH . M 5 HOH A 72 572 36 HOH HOH . M 5 HOH A 73 573 62 HOH HOH . M 5 HOH A 74 574 7 HOH HOH . M 5 HOH A 75 575 38 HOH HOH . M 5 HOH A 76 576 67 HOH HOH . M 5 HOH A 77 577 295 HOH HOH . M 5 HOH A 78 578 311 HOH HOH . M 5 HOH A 79 579 313 HOH HOH . M 5 HOH A 80 580 179 HOH HOH . M 5 HOH A 81 581 106 HOH HOH . M 5 HOH A 82 582 281 HOH HOH . M 5 HOH A 83 583 216 HOH HOH . M 5 HOH A 84 584 11 HOH HOH . M 5 HOH A 85 585 132 HOH HOH . M 5 HOH A 86 586 14 HOH HOH . M 5 HOH A 87 587 42 HOH HOH . M 5 HOH A 88 588 101 HOH HOH . M 5 HOH A 89 589 16 HOH HOH . M 5 HOH A 90 590 34 HOH HOH . M 5 HOH A 91 591 15 HOH HOH . M 5 HOH A 92 592 61 HOH HOH . M 5 HOH A 93 593 1 HOH HOH . M 5 HOH A 94 594 9 HOH HOH . M 5 HOH A 95 595 117 HOH HOH . M 5 HOH A 96 596 251 HOH HOH . M 5 HOH A 97 597 170 HOH HOH . M 5 HOH A 98 598 57 HOH HOH . M 5 HOH A 99 599 160 HOH HOH . M 5 HOH A 100 600 45 HOH HOH . M 5 HOH A 101 601 58 HOH HOH . M 5 HOH A 102 602 116 HOH HOH . M 5 HOH A 103 603 222 HOH HOH . M 5 HOH A 104 604 68 HOH HOH . M 5 HOH A 105 605 94 HOH HOH . M 5 HOH A 106 606 33 HOH HOH . M 5 HOH A 107 607 47 HOH HOH . M 5 HOH A 108 608 65 HOH HOH . M 5 HOH A 109 609 157 HOH HOH . M 5 HOH A 110 610 120 HOH HOH . M 5 HOH A 111 611 80 HOH HOH . M 5 HOH A 112 612 63 HOH HOH . M 5 HOH A 113 613 150 HOH HOH . M 5 HOH A 114 614 3 HOH HOH . M 5 HOH A 115 615 26 HOH HOH . M 5 HOH A 116 616 95 HOH HOH . M 5 HOH A 117 617 195 HOH HOH . M 5 HOH A 118 618 231 HOH HOH . M 5 HOH A 119 619 73 HOH HOH . M 5 HOH A 120 620 98 HOH HOH . M 5 HOH A 121 621 22 HOH HOH . M 5 HOH A 122 622 278 HOH HOH . M 5 HOH A 123 623 23 HOH HOH . M 5 HOH A 124 624 143 HOH HOH . M 5 HOH A 125 625 89 HOH HOH . M 5 HOH A 126 626 4 HOH HOH . M 5 HOH A 127 627 193 HOH HOH . M 5 HOH A 128 628 66 HOH HOH . M 5 HOH A 129 629 111 HOH HOH . M 5 HOH A 130 630 8 HOH HOH . M 5 HOH A 131 631 202 HOH HOH . M 5 HOH A 132 632 113 HOH HOH . M 5 HOH A 133 633 46 HOH HOH . M 5 HOH A 134 634 2 HOH HOH . M 5 HOH A 135 635 69 HOH HOH . M 5 HOH A 136 636 60 HOH HOH . M 5 HOH A 137 637 40 HOH HOH . M 5 HOH A 138 638 99 HOH HOH . M 5 HOH A 139 639 78 HOH HOH . M 5 HOH A 140 640 25 HOH HOH . M 5 HOH A 141 641 159 HOH HOH . M 5 HOH A 142 642 24 HOH HOH . M 5 HOH A 143 643 227 HOH HOH . M 5 HOH A 144 644 133 HOH HOH . M 5 HOH A 145 645 316 HOH HOH . M 5 HOH A 146 646 153 HOH HOH . M 5 HOH A 147 647 155 HOH HOH . M 5 HOH A 148 648 6 HOH HOH . M 5 HOH A 149 649 53 HOH HOH . M 5 HOH A 150 650 109 HOH HOH . M 5 HOH A 151 651 48 HOH HOH . M 5 HOH A 152 652 90 HOH HOH . M 5 HOH A 153 653 273 HOH HOH . M 5 HOH A 154 654 56 HOH HOH . M 5 HOH A 155 655 52 HOH HOH . M 5 HOH A 156 656 136 HOH HOH . M 5 HOH A 157 657 59 HOH HOH . M 5 HOH A 158 658 203 HOH HOH . M 5 HOH A 159 659 43 HOH HOH . M 5 HOH A 160 660 140 HOH HOH . M 5 HOH A 161 661 118 HOH HOH . M 5 HOH A 162 662 82 HOH HOH . M 5 HOH A 163 663 309 HOH HOH . M 5 HOH A 164 664 37 HOH HOH . M 5 HOH A 165 665 17 HOH HOH . M 5 HOH A 166 666 204 HOH HOH . M 5 HOH A 167 667 18 HOH HOH . M 5 HOH A 168 668 240 HOH HOH . M 5 HOH A 169 669 146 HOH HOH . M 5 HOH A 170 670 255 HOH HOH . M 5 HOH A 171 671 249 HOH HOH . M 5 HOH A 172 672 128 HOH HOH . M 5 HOH A 173 673 21 HOH HOH . M 5 HOH A 174 674 177 HOH HOH . M 5 HOH A 175 675 70 HOH HOH . M 5 HOH A 176 676 51 HOH HOH . M 5 HOH A 177 677 86 HOH HOH . M 5 HOH A 178 678 123 HOH HOH . M 5 HOH A 179 679 205 HOH HOH . M 5 HOH A 180 680 161 HOH HOH . M 5 HOH A 181 681 171 HOH HOH . M 5 HOH A 182 682 85 HOH HOH . M 5 HOH A 183 683 115 HOH HOH . M 5 HOH A 184 684 245 HOH HOH . M 5 HOH A 185 685 156 HOH HOH . M 5 HOH A 186 686 283 HOH HOH . M 5 HOH A 187 687 92 HOH HOH . M 5 HOH A 188 688 145 HOH HOH . M 5 HOH A 189 689 163 HOH HOH . M 5 HOH A 190 690 234 HOH HOH . M 5 HOH A 191 691 215 HOH HOH . M 5 HOH A 192 692 288 HOH HOH . M 5 HOH A 193 693 50 HOH HOH . M 5 HOH A 194 694 287 HOH HOH . M 5 HOH A 195 695 108 HOH HOH . M 5 HOH A 196 696 110 HOH HOH . M 5 HOH A 197 697 257 HOH HOH . M 5 HOH A 198 698 44 HOH HOH . M 5 HOH A 199 699 126 HOH HOH . M 5 HOH A 200 700 289 HOH HOH . M 5 HOH A 201 701 312 HOH HOH . M 5 HOH A 202 702 298 HOH HOH . M 5 HOH A 203 703 317 HOH HOH . M 5 HOH A 204 704 262 HOH HOH . M 5 HOH A 205 705 290 HOH HOH . M 5 HOH A 206 706 282 HOH HOH . M 5 HOH A 207 707 105 HOH HOH . M 5 HOH A 208 708 214 HOH HOH . M 5 HOH A 209 709 247 HOH HOH . M 5 HOH A 210 710 174 HOH HOH . M 5 HOH A 211 711 291 HOH HOH . M 5 HOH A 212 712 164 HOH HOH . M 5 HOH A 213 713 166 HOH HOH . M 5 HOH A 214 714 296 HOH HOH . M 5 HOH A 215 715 199 HOH HOH . M 5 HOH A 216 716 219 HOH HOH . M 5 HOH A 217 717 139 HOH HOH . M 5 HOH A 218 718 246 HOH HOH . M 5 HOH A 219 719 76 HOH HOH . M 5 HOH A 220 720 226 HOH HOH . M 5 HOH A 221 721 103 HOH HOH . M 5 HOH A 222 722 237 HOH HOH . M 5 HOH A 223 723 180 HOH HOH . M 5 HOH A 224 724 104 HOH HOH . M 5 HOH A 225 725 303 HOH HOH . M 5 HOH A 226 726 253 HOH HOH . M 5 HOH A 227 727 130 HOH HOH . M 5 HOH A 228 728 124 HOH HOH . M 5 HOH A 229 729 137 HOH HOH . M 5 HOH A 230 730 183 HOH HOH . M 5 HOH A 231 731 297 HOH HOH . M 5 HOH A 232 732 207 HOH HOH . M 5 HOH A 233 733 279 HOH HOH . M 5 HOH A 234 734 236 HOH HOH . M 5 HOH A 235 735 185 HOH HOH . M 5 HOH A 236 736 274 HOH HOH . M 5 HOH A 237 737 210 HOH HOH . M 5 HOH A 238 738 167 HOH HOH . M 5 HOH A 239 739 264 HOH HOH . M 5 HOH A 240 740 258 HOH HOH . M 5 HOH A 241 741 256 HOH HOH . M 5 HOH A 242 742 300 HOH HOH . M 5 HOH A 243 743 134 HOH HOH . M 5 HOH A 244 744 206 HOH HOH . M 5 HOH A 245 745 71 HOH HOH . M 5 HOH A 246 746 269 HOH HOH . M 5 HOH A 247 747 151 HOH HOH . M 5 HOH A 248 748 308 HOH HOH . M 5 HOH A 249 749 261 HOH HOH . M 5 HOH A 250 750 243 HOH HOH . M 5 HOH A 251 751 125 HOH HOH . M 5 HOH A 252 752 254 HOH HOH . M 5 HOH A 253 753 148 HOH HOH . M 5 HOH A 254 754 127 HOH HOH . M 5 HOH A 255 755 112 HOH HOH . M 5 HOH A 256 756 175 HOH HOH . M 5 HOH A 257 757 55 HOH HOH . M 5 HOH A 258 758 122 HOH HOH . M 5 HOH A 259 759 129 HOH HOH . M 5 HOH A 260 760 165 HOH HOH . M 5 HOH A 261 761 84 HOH HOH . M 5 HOH A 262 762 152 HOH HOH . M 5 HOH A 263 763 176 HOH HOH . M 5 HOH A 264 764 238 HOH HOH . M 5 HOH A 265 765 265 HOH HOH . M 5 HOH A 266 766 87 HOH HOH . M 5 HOH A 267 767 272 HOH HOH . M 5 HOH A 268 768 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 18.536 28.432 37.974 1 43.77 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 18.725 29.656 37.273 1 40.63 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 19.272 28.565 39.304 1 47.55 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 18.565 29.349 40.182 1 60.08 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 19.495 27.126 39.835 1 47.88 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 20.309 27.25 40.967 1 46.37 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #