data_6RX1 # _model_server_result.job_id imdlZZt64gFKO7BfSjCD0w _model_server_result.datetime_utc '2024-11-05 00:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rx1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6RX1 # _exptl.entry_id 6RX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RX1 _cell.length_a 50.416 _cell.length_b 50.416 _cell.length_c 260.199 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -25.208 43.661537 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -50.416 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 70 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 397 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 77 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 404 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.043 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6RX1 _atom_sites.fract_transf_matrix[1][1] 0.019835 _atom_sites.fract_transf_matrix[1][2] 0.011452 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL GOL . C 3 CL A 1 502 600 CL CL . D 4 HOH A 1 601 1015 HOH HOH . D 4 HOH A 2 602 1005 HOH HOH . D 4 HOH A 3 603 1052 HOH HOH . D 4 HOH A 4 604 1039 HOH HOH . D 4 HOH A 5 605 1040 HOH HOH . D 4 HOH A 6 606 1007 HOH HOH . D 4 HOH A 7 607 1024 HOH HOH . D 4 HOH A 8 608 1002 HOH HOH . D 4 HOH A 9 609 1061 HOH HOH . D 4 HOH A 10 610 1033 HOH HOH . D 4 HOH A 11 611 1001 HOH HOH . D 4 HOH A 12 612 1023 HOH HOH . D 4 HOH A 13 613 1046 HOH HOH . D 4 HOH A 14 614 1028 HOH HOH . D 4 HOH A 15 615 1059 HOH HOH . D 4 HOH A 16 616 1038 HOH HOH . D 4 HOH A 17 617 1027 HOH HOH . D 4 HOH A 18 618 1042 HOH HOH . D 4 HOH A 19 619 1004 HOH HOH . D 4 HOH A 20 620 1034 HOH HOH . D 4 HOH A 21 621 1022 HOH HOH . D 4 HOH A 22 622 1009 HOH HOH . D 4 HOH A 23 623 1016 HOH HOH . D 4 HOH A 24 624 1013 HOH HOH . D 4 HOH A 25 625 1010 HOH HOH . D 4 HOH A 26 626 1030 HOH HOH . D 4 HOH A 27 627 1017 HOH HOH . D 4 HOH A 28 628 1029 HOH HOH . D 4 HOH A 29 629 1011 HOH HOH . D 4 HOH A 30 630 1037 HOH HOH . D 4 HOH A 31 631 1070 HOH HOH . D 4 HOH A 32 632 1003 HOH HOH . D 4 HOH A 33 633 1019 HOH HOH . D 4 HOH A 34 634 1044 HOH HOH . D 4 HOH A 35 635 1026 HOH HOH . D 4 HOH A 36 636 1006 HOH HOH . D 4 HOH A 37 637 1008 HOH HOH . D 4 HOH A 38 638 1021 HOH HOH . D 4 HOH A 39 639 1049 HOH HOH . D 4 HOH A 40 640 1064 HOH HOH . D 4 HOH A 41 641 1065 HOH HOH . D 4 HOH A 42 642 1050 HOH HOH . D 4 HOH A 43 643 1012 HOH HOH . D 4 HOH A 44 644 1025 HOH HOH . D 4 HOH A 45 645 1020 HOH HOH . D 4 HOH A 46 646 1060 HOH HOH . D 4 HOH A 47 647 1018 HOH HOH . D 4 HOH A 48 648 1055 HOH HOH . D 4 HOH A 49 649 1066 HOH HOH . D 4 HOH A 50 650 1035 HOH HOH . D 4 HOH A 51 651 1032 HOH HOH . D 4 HOH A 52 652 1057 HOH HOH . D 4 HOH A 53 653 1054 HOH HOH . D 4 HOH A 54 654 1058 HOH HOH . D 4 HOH A 55 655 1031 HOH HOH . D 4 HOH A 56 656 1043 HOH HOH . D 4 HOH A 57 657 1036 HOH HOH . D 4 HOH A 58 658 1069 HOH HOH . D 4 HOH A 59 659 1047 HOH HOH . D 4 HOH A 60 660 1068 HOH HOH . D 4 HOH A 61 661 1067 HOH HOH . D 4 HOH A 62 662 1045 HOH HOH . D 4 HOH A 63 663 1056 HOH HOH . D 4 HOH A 64 664 1014 HOH HOH . D 4 HOH A 65 665 1051 HOH HOH . D 4 HOH A 66 666 1062 HOH HOH . D 4 HOH A 67 667 1048 HOH HOH . D 4 HOH A 68 668 1041 HOH HOH . D 4 HOH A 69 669 1063 HOH HOH . D 4 HOH A 70 670 1053 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -16.233 23.584 -10.327 1 80.21 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -15.441 24.141 -9.283 1 77.51 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -15.995 22.097 -10.464 1 81.38 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -16.533 21.406 -9.332 1 78.74 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -16.613 21.544 -11.729 1 83.93 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -15.929 22.018 -12.883 1 86.04 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #