data_6RX4
#
_model_server_result.job_id            oHsR-eMPf433aGBymUCn7g 
_model_server_result.datetime_utc      '2024-11-04 22:39:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":603}' 
#
_entry.id    6RX4 
#
_exptl.entry_id    6RX4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              632.487 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RX4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 G FE HDD . A HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc2 A NE2 HIS 186 A HIS 186 1_555 E FE HEB . A HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O5' 
_chem_comp.formula_weight    632.487 
_chem_comp.id                HDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HDD sing 129 n n 
FE NB HDD sing 130 n n 
FE NC HDD sing 131 n n 
FE ND HDD sing 132 n n 
CHA C1A HDD sing 133 n n 
CHA C4D HDD doub 134 n n 
CHA HHA HDD sing 135 n n 
CHB C4A HDD sing 136 n n 
CHB C1B HDD doub 137 n n 
CHB HHB HDD sing 138 n n 
CHC C4B HDD doub 139 n n 
CHC C1C HDD sing 140 n n 
CHC HHC HDD sing 141 n n 
CHD C4C HDD sing 142 n n 
CHD C1D HDD doub 143 n n 
CHD HHD HDD sing 144 n n 
NA C1A HDD sing 145 n y 
NA C4A HDD sing 146 n y 
C1A C2A HDD doub 147 n y 
C2A C3A HDD sing 148 n y 
C2A CAA HDD sing 149 n n 
C3A C4A HDD doub 150 n y 
C3A CMA HDD sing 151 n n 
CMA HMA1 HDD sing 152 n n 
CMA HMA2 HDD sing 153 n n 
CMA HMA3 HDD sing 154 n n 
CAA CBA HDD sing 155 n n 
CAA HAA1 HDD sing 156 n n 
CAA HAA2 HDD sing 157 n n 
CBA CGA HDD sing 158 n n 
CBA HBA1 HDD sing 159 n n 
CBA HBA2 HDD sing 160 n n 
CGA O1A HDD doub 161 n n 
CGA O2A HDD sing 162 n n 
O2A H2A HDD sing 163 n n 
NB C1B HDD sing 164 n y 
NB C4B HDD sing 165 n y 
C1B C2B HDD sing 166 n y 
C2B C3B HDD doub 167 n y 
C2B CMB HDD sing 168 n n 
C3B C4B HDD sing 169 n y 
C3B CAB HDD sing 170 n n 
CMB HMB1 HDD sing 171 n n 
CMB HMB2 HDD sing 172 n n 
CMB HMB3 HDD sing 173 n n 
CAB CBB HDD doub 174 n n 
CAB HAB HDD sing 175 n n 
CBB HBB1 HDD sing 176 n n 
CBB HBB2 HDD sing 177 n n 
NC C1C HDD sing 178 n y 
NC C4C HDD sing 179 n y 
C1C C2C HDD doub 180 n y 
C2C C3C HDD sing 181 n y 
C2C CMC HDD sing 182 n n 
C3C C4C HDD doub 183 n y 
C3C CAC HDD sing 184 n n 
CMC HMC1 HDD sing 185 n n 
CMC HMC2 HDD sing 186 n n 
CMC HMC3 HDD sing 187 n n 
CAC CBC HDD doub 188 n n 
CAC HAC HDD sing 189 n n 
CBC HBC1 HDD sing 190 n n 
CBC HBC2 HDD sing 191 n n 
ND C1D HDD sing 192 n n 
ND C4D HDD sing 193 n n 
C1D C2D HDD sing 194 n n 
C2D C3D HDD sing 195 n n 
C2D CMD HDD sing 196 n n 
C2D OND HDD sing 197 n n 
C3D C4D HDD sing 198 n n 
C3D CAD HDD sing 199 n n 
C3D O1D HDD sing 200 n n 
CMD HMD1 HDD sing 201 n n 
CMD HMD2 HDD sing 202 n n 
CMD HMD3 HDD sing 203 n n 
CAD CBD HDD sing 204 n n 
CAD HAD1 HDD sing 205 n n 
CAD HAD2 HDD sing 206 n n 
CBD CGD HDD sing 207 n n 
CBD HBD1 HDD sing 208 n n 
CBD HBD2 HDD sing 209 n n 
CGD O1D HDD sing 210 n n 
CGD O2D HDD doub 211 n n 
OND HND HDD sing 212 n n 
#
_atom_sites.entry_id                     6RX4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEB A 1 601 558 HEB HEB . 
F 5 HEB A 1 602 595 HEB HEB . 
G 6 HDD A 1 603 600 HDD HDD . 
H 7 PEE B 1 701 701 PEE PEE . 
I 8 UQ8 B 1 702 801 UQ8 UQ8 . 
J 9 HOH A 1 701 806 HOH HOH . 
J 9 HOH A 2 702 800 HOH HOH . 
J 9 HOH A 3 703 804 HOH HOH . 
K 9 HOH B 1 801 801 HOH HOH . 
K 9 HOH B 2 802 805 HOH HOH . 
K 9 HOH B 3 803 803 HOH HOH . 
K 9 HOH B 4 804 802 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HDD . . . G 6 79.993 75.506 78.95 1 52.44 ? FE HDD 603 A 1 
HETATM 2 C CHA HDD . . . G 6 80.169 77.654 81.417 1 52.44 ? CHA HDD 603 A 1 
HETATM 3 C CHB HDD . . . G 6 79.301 77.815 76.657 1 52.44 ? CHB HDD 603 A 1 
HETATM 4 C CHC HDD . . . G 6 80.764 73.309 76.672 1 52.44 ? CHC HDD 603 A 1 
HETATM 5 C CHD HDD . . . G 6 78.861 73.228 81.132 1 52.44 ? CHD HDD 603 A 1 
HETATM 6 N NA HDD . . . G 6 79.754 77.372 78.999 1 52.44 ? NA HDD 603 A 1 
HETATM 7 C C1A HDD . . . G 6 79.873 78.161 80.1 1 52.44 ? C1A HDD 603 A 1 
HETATM 8 C C2A HDD . . . G 6 79.659 79.485 79.772 1 52.44 ? C2A HDD 603 A 1 
HETATM 9 C C3A HDD . . . G 6 79.416 79.514 78.423 1 52.44 ? C3A HDD 603 A 1 
HETATM 10 C C4A HDD . . . G 6 79.488 78.208 77.967 1 52.44 ? C4A HDD 603 A 1 
HETATM 11 C CMA HDD . . . G 6 79.12 80.705 77.564 1 52.44 ? CMA HDD 603 A 1 
HETATM 12 C CAA HDD . . . G 6 79.686 80.644 80.726 1 52.44 ? CAA HDD 603 A 1 
HETATM 13 C CBA HDD . . . G 6 78.304 80.759 81.369 1 52.44 ? CBA HDD 603 A 1 
HETATM 14 C CGA HDD . . . G 6 78.361 81.655 82.574 1 52.44 ? CGA HDD 603 A 1 
HETATM 15 O O1A HDD . . . G 6 78.674 82.812 82.454 1 52.44 ? O1A HDD 603 A 1 
HETATM 16 O O2A HDD . . . G 6 78.059 81.163 83.783 1 52.44 ? O2A HDD 603 A 1 
HETATM 17 N NB HDD . . . G 6 80.026 75.547 77.07 1 52.44 ? NB HDD 603 A 1 
HETATM 18 C C1B HDD . . . G 6 79.708 76.596 76.241 1 52.44 ? C1B HDD 603 A 1 
HETATM 19 C C2B HDD . . . G 6 79.851 76.26 74.888 1 52.44 ? C2B HDD 603 A 1 
HETATM 20 C C3B HDD . . . G 6 80.275 74.978 74.844 1 52.44 ? C3B HDD 603 A 1 
HETATM 21 C C4B HDD . . . G 6 80.388 74.522 76.25 1 52.44 ? C4B HDD 603 A 1 
HETATM 22 C CMB HDD . . . G 6 79.589 77.159 73.717 1 52.44 ? CMB HDD 603 A 1 
HETATM 23 C CAB HDD . . . G 6 80.539 74.238 73.612 1 52.44 ? CAB HDD 603 A 1 
HETATM 24 C CBB HDD . . . G 6 81.723 73.698 73.389 1 52.44 ? CBB HDD 603 A 1 
HETATM 25 N NC HDD . . . G 6 79.829 73.626 78.886 1 52.44 ? NC HDD 603 A 1 
HETATM 26 C C1C HDD . . . G 6 80.224 72.829 77.864 1 52.44 ? C1C HDD 603 A 1 
HETATM 27 C C2C HDD . . . G 6 79.989 71.493 78.153 1 52.44 ? C2C HDD 603 A 1 
HETATM 28 C C3C HDD . . . G 6 79.439 71.476 79.434 1 52.44 ? C3C HDD 603 A 1 
HETATM 29 C C4C HDD . . . G 6 79.372 72.81 79.855 1 52.44 ? C4C HDD 603 A 1 
HETATM 30 C CMC HDD . . . G 6 80.286 70.324 77.256 1 52.44 ? CMC HDD 603 A 1 
HETATM 31 C CAC HDD . . . G 6 79.016 70.333 80.251 1 52.44 ? CAC HDD 603 A 1 
HETATM 32 C CBC HDD . . . G 6 78.111 69.452 79.869 1 52.44 ? CBC HDD 603 A 1 
HETATM 33 N ND HDD . . . G 6 79.632 75.448 80.792 1 52.44 ? ND HDD 603 A 1 
HETATM 34 C C1D HDD . . . G 6 78.907 74.493 81.464 1 52.44 ? C1D HDD 603 A 1 
HETATM 35 C C2D HDD . . . G 6 78.483 75.08 82.803 1 52.44 ? C2D HDD 603 A 1 
HETATM 36 C C3D HDD . . . G 6 79.768 75.834 83.088 1 52.44 ? C3D HDD 603 A 1 
HETATM 37 C C4D HDD . . . G 6 80.054 76.375 81.692 1 52.44 ? C4D HDD 603 A 1 
HETATM 38 C CMD HDD . . . G 6 78.18 74 83.83 1 52.44 ? CMD HDD 603 A 1 
HETATM 39 C CAD HDD . . . G 6 80.907 74.933 83.555 1 52.44 ? CAD HDD 603 A 1 
HETATM 40 C CBD HDD . . . G 6 81.627 75.797 84.598 1 52.44 ? CBD HDD 603 A 1 
HETATM 41 C CGD HDD . . . G 6 80.817 77.064 84.658 1 52.44 ? CGD HDD 603 A 1 
HETATM 42 O O1D HDD . . . G 6 79.643 76.889 84.046 1 52.44 ? O1D HDD 603 A 1 
HETATM 43 O O2D HDD . . . G 6 81.197 78.095 85.158 1 52.44 ? O2D HDD 603 A 1 
HETATM 44 O OND HDD . . . G 6 77.397 75.971 82.649 1 52.44 ? OND HDD 603 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#