data_6RX4 # _model_server_result.job_id 6b2waXBzicreBLH-PmGK4w _model_server_result.datetime_utc '2024-11-04 22:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 6RX4 # _exptl.entry_id 6RX4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 727.109 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ubiquinone-8 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RX4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 G FE HDD . A HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc2 A NE2 HIS 186 A HIS 186 1_555 E FE HEB . A HEB 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? # _chem_comp.formula 'C49 H74 O4' _chem_comp.formula_weight 727.109 _chem_comp.id UQ8 _chem_comp.mon_nstd_flag . _chem_comp.name Ubiquinone-8 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-dimethoxy-5-methyl-6-[(6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-oc taen-1-yl]cyclohexa-2,5-diene-1,4-dione' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C45 C44 UQ8 sing 654 n n C45 H45 UQ8 sing 655 n n C45 H45A UQ8 sing 656 n n C45 H45B UQ8 sing 657 n n C43 C44 UQ8 doub 658 n n C44 C46 UQ8 sing 659 n n C46 H46 UQ8 sing 660 n n C46 H46A UQ8 sing 661 n n C46 H46B UQ8 sing 662 n n C42 C43 UQ8 sing 663 n n C43 H43 UQ8 sing 664 n n C41 C42 UQ8 sing 665 n n C42 H42 UQ8 sing 666 n n C42 H42A UQ8 sing 667 n n C39 C41 UQ8 sing 668 n n C41 H41 UQ8 sing 669 n n C41 H41A UQ8 sing 670 n n C40 C39 UQ8 sing 671 n n C38 C39 UQ8 doub 672 n n C40 H40 UQ8 sing 673 n n C40 H40A UQ8 sing 674 n n C40 H40B UQ8 sing 675 e n C37 C38 UQ8 sing 676 n n C38 H38 UQ8 sing 677 n n C37 C36 UQ8 sing 678 n n C37 H37 UQ8 sing 679 n n C37 H37A UQ8 sing 680 n n C34 C36 UQ8 sing 681 n n C36 H36 UQ8 sing 682 n n C36 H36A UQ8 sing 683 n n C33 C34 UQ8 doub 684 n n C34 C35 UQ8 sing 685 n n C35 H35 UQ8 sing 686 n n C35 H35A UQ8 sing 687 n n C32 C33 UQ8 sing 688 e n C33 H33 UQ8 sing 689 n n C35 H35B UQ8 sing 690 n n C31 C32 UQ8 sing 691 n n C32 H32 UQ8 sing 692 n n C32 H32A UQ8 sing 693 n n C29 C31 UQ8 sing 694 n n C31 H31 UQ8 sing 695 n n C31 H31A UQ8 sing 696 n n C28 C29 UQ8 doub 697 n n C30 C29 UQ8 sing 698 n n C30 H30 UQ8 sing 699 n n C30 H30A UQ8 sing 700 n n C30 H30B UQ8 sing 701 e n C27 C28 UQ8 sing 702 n n C28 H28 UQ8 sing 703 n n C26 C27 UQ8 sing 704 n n C27 H27 UQ8 sing 705 n n C27 H27A UQ8 sing 706 n n C24 C26 UQ8 sing 707 n n C26 H26 UQ8 sing 708 n n C26 H26A UQ8 sing 709 n n C23 C24 UQ8 doub 710 n n C24 C25 UQ8 sing 711 n n C25 H25 UQ8 sing 712 n n C25 H25A UQ8 sing 713 n n C25 H25B UQ8 sing 714 e n C22 C23 UQ8 sing 715 n n C23 H23 UQ8 sing 716 n n C21 C22 UQ8 sing 717 n n C22 H22 UQ8 sing 718 n n C22 H22A UQ8 sing 719 n n C19 C21 UQ8 sing 720 n n C21 H21 UQ8 sing 721 n n C21 H21A UQ8 sing 722 n n C20 C19 UQ8 sing 723 n n C18 C19 UQ8 doub 724 n n C20 H20 UQ8 sing 725 n n C20 H20A UQ8 sing 726 n n C20 H20B UQ8 sing 727 e n C17 C18 UQ8 sing 728 n n C18 H18 UQ8 sing 729 n n C16 C17 UQ8 sing 730 n n C17 H17 UQ8 sing 731 n n C17 H17A UQ8 sing 732 n n C14 C16 UQ8 sing 733 n n C16 H16 UQ8 sing 734 n n C16 H16A UQ8 sing 735 n n C13 C14 UQ8 doub 736 n n C15 C14 UQ8 sing 737 n n C15 H15 UQ8 sing 738 n n C15 H15A UQ8 sing 739 n n C15 H15B UQ8 sing 740 e n C12 C13 UQ8 sing 741 n n C13 H13 UQ8 sing 742 n n C11 C12 UQ8 sing 743 n n C12 H12 UQ8 sing 744 n n C12 H12A UQ8 sing 745 n n C9 C11 UQ8 sing 746 n n C11 H11 UQ8 sing 747 n n C11 H11A UQ8 sing 748 n n C8 C9 UQ8 doub 749 n n C10 C9 UQ8 sing 750 n n C10 H10 UQ8 sing 751 n n C10 H10A UQ8 sing 752 n n C10 H10B UQ8 sing 753 e n C7 C8 UQ8 sing 754 n n C8 H8 UQ8 sing 755 n n C6 C7 UQ8 sing 756 n n C7 H7 UQ8 sing 757 n n C7 H7A UQ8 sing 758 n n C1 C6 UQ8 doub 759 n n C5 C6 UQ8 sing 760 n n C2 C1 UQ8 sing 761 n n C1 C1M UQ8 sing 762 n n C1M H1M UQ8 sing 763 n n C1M H1MA UQ8 sing 764 n n C1M H1MB UQ8 sing 765 n n O2 C2 UQ8 doub 766 n n C3 C2 UQ8 sing 767 n n O3 C3 UQ8 sing 768 n n C3 C4 UQ8 doub 769 n n C3M O3 UQ8 sing 770 n n C3M H3M UQ8 sing 771 n n C3M H3MA UQ8 sing 772 n n C3M H3MB UQ8 sing 773 n n O4 C4 UQ8 sing 774 n n C4 C5 UQ8 sing 775 n n C4M O4 UQ8 sing 776 n n C4M H4M UQ8 sing 777 n n C4M H4MA UQ8 sing 778 n n C4M H4MB UQ8 sing 779 n n C5 O5 UQ8 doub 780 n n # _atom_sites.entry_id 6RX4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEB A 1 601 558 HEB HEB . F 5 HEB A 1 602 595 HEB HEB . G 6 HDD A 1 603 600 HDD HDD . H 7 PEE B 1 701 701 PEE PEE . I 8 UQ8 B 1 702 801 UQ8 UQ8 . J 9 HOH A 1 701 806 HOH HOH . J 9 HOH A 2 702 800 HOH HOH . J 9 HOH A 3 703 804 HOH HOH . K 9 HOH B 1 801 801 HOH HOH . K 9 HOH B 2 802 805 HOH HOH . K 9 HOH B 3 803 803 HOH HOH . K 9 HOH B 4 804 802 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C45 UQ8 . . . I 8 68.954 98.326 69.442 1 59.88 ? C45 UQ8 702 B 1 HETATM 2 C C44 UQ8 . . . I 8 68.768 97.365 68.339 1 59.88 ? C44 UQ8 702 B 1 HETATM 3 C C46 UQ8 . . . I 8 67.394 97.165 67.823 1 59.88 ? C46 UQ8 702 B 1 HETATM 4 C C43 UQ8 . . . I 8 69.816 96.711 67.838 1 59.88 ? C43 UQ8 702 B 1 HETATM 5 C C42 UQ8 . . . I 8 69.715 95.732 66.733 1 59.88 ? C42 UQ8 702 B 1 HETATM 6 C C41 UQ8 . . . I 8 70.214 96.436 65.473 1 59.88 ? C41 UQ8 702 B 1 HETATM 7 C C39 UQ8 . . . I 8 71.688 96.287 65.424 1 59.88 ? C39 UQ8 702 B 1 HETATM 8 C C40 UQ8 . . . I 8 72.495 97.532 65.486 1 59.88 ? C40 UQ8 702 B 1 HETATM 9 C C38 UQ8 . . . I 8 72.24 95.081 65.326 1 59.88 ? C38 UQ8 702 B 1 HETATM 10 C C37 UQ8 . . . I 8 73.705 94.88 65.269 1 59.88 ? C37 UQ8 702 B 1 HETATM 11 C C36 UQ8 . . . I 8 74.104 94.046 66.454 1 59.88 ? C36 UQ8 702 B 1 HETATM 12 C C34 UQ8 . . . I 8 75.228 93.187 66.02 1 59.88 ? C34 UQ8 702 B 1 HETATM 13 C C35 UQ8 . . . I 8 74.891 91.999 65.205 1 59.88 ? C35 UQ8 702 B 1 HETATM 14 C C33 UQ8 . . . I 8 76.479 93.487 66.359 1 59.88 ? C33 UQ8 702 B 1 HETATM 15 C C32 UQ8 . . . I 8 77.645 92.638 65.962 1 59.88 ? C32 UQ8 702 B 1 HETATM 16 C C31 UQ8 . . . I 8 79.003 93.234 66.424 1 59.88 ? C31 UQ8 702 B 1 HETATM 17 C C29 UQ8 . . . I 8 78.956 93.549 67.879 1 59.88 ? C29 UQ8 702 B 1 HETATM 18 C C30 UQ8 . . . I 8 79.306 94.947 68.238 1 59.88 ? C30 UQ8 702 B 1 HETATM 19 C C28 UQ8 . . . I 8 78.651 92.621 68.794 1 59.88 ? C28 UQ8 702 B 1 HETATM 20 C C27 UQ8 . . . I 8 78.573 92.93 70.233 1 59.88 ? C27 UQ8 702 B 1 HETATM 21 C C26 UQ8 . . . I 8 77.092 93.173 70.55 1 59.88 ? C26 UQ8 702 B 1 HETATM 22 C C24 UQ8 . . . I 8 77.056 94.026 71.756 1 59.88 ? C24 UQ8 702 B 1 HETATM 23 C C25 UQ8 . . . I 8 77.498 93.381 72.995 1 59.88 ? C25 UQ8 702 B 1 HETATM 24 C C23 UQ8 . . . I 8 76.624 95.294 71.703 1 59.88 ? C23 UQ8 702 B 1 HETATM 25 C C22 UQ8 . . . I 8 76.567 96.186 72.908 1 59.88 ? C22 UQ8 702 B 1 HETATM 26 C C21 UQ8 . . . I 8 76.446 97.668 72.455 1 59.88 ? C21 UQ8 702 B 1 HETATM 27 C C19 UQ8 . . . I 8 77.012 98.617 73.494 1 59.88 ? C19 UQ8 702 B 1 HETATM 28 C C20 UQ8 . . . I 8 77.07 98.163 74.911 1 59.88 ? C20 UQ8 702 B 1 HETATM 29 C C18 UQ8 . . . I 8 77.431 99.846 73.163 1 59.88 ? C18 UQ8 702 B 1 HETATM 30 C C17 UQ8 . . . I 8 77.417 100.417 71.785 1 59.88 ? C17 UQ8 702 B 1 HETATM 31 C C16 UQ8 . . . I 8 76.77 101.83 71.791 1 59.88 ? C16 UQ8 702 B 1 HETATM 32 C C14 UQ8 . . . I 8 77.145 102.572 70.527 1 59.88 ? C14 UQ8 702 B 1 HETATM 33 C C15 UQ8 . . . I 8 78.559 102.504 70.097 1 59.88 ? C15 UQ8 702 B 1 HETATM 34 C C13 UQ8 . . . I 8 76.23 103.272 69.841 1 59.88 ? C13 UQ8 702 B 1 HETATM 35 C C12 UQ8 . . . I 8 76.545 104.034 68.584 1 59.88 ? C12 UQ8 702 B 1 HETATM 36 C C11 UQ8 . . . I 8 75.545 105.206 68.432 1 59.88 ? C11 UQ8 702 B 1 HETATM 37 C C9 UQ8 . . . I 8 76.176 106.267 67.567 1 59.88 ? C9 UQ8 702 B 1 HETATM 38 C C10 UQ8 . . . I 8 77.525 106.736 67.953 1 59.88 ? C10 UQ8 702 B 1 HETATM 39 C C8 UQ8 . . . I 8 75.554 106.783 66.499 1 59.88 ? C8 UQ8 702 B 1 HETATM 40 C C7 UQ8 . . . I 8 74.191 106.332 66.078 1 59.88 ? C7 UQ8 702 B 1 HETATM 41 C C6 UQ8 . . . I 8 73.383 107.484 65.532 1 59.88 ? C6 UQ8 702 B 1 HETATM 42 C C1 UQ8 . . . I 8 73.152 107.646 64.227 1 59.88 ? C1 UQ8 702 B 1 HETATM 43 C C1M UQ8 . . . I 8 73.703 106.721 63.212 1 59.88 ? C1M UQ8 702 B 1 HETATM 44 C C2 UQ8 . . . I 8 72.338 108.777 63.722 1 59.88 ? C2 UQ8 702 B 1 HETATM 45 O O2 UQ8 . . . I 8 72.119 108.951 62.546 1 59.88 ? O2 UQ8 702 B 1 HETATM 46 C C3 UQ8 . . . I 8 71.791 109.701 64.735 1 59.88 ? C3 UQ8 702 B 1 HETATM 47 O O3 UQ8 . . . I 8 71.043 110.748 64.291 1 59.88 ? O3 UQ8 702 B 1 HETATM 48 C C3M UQ8 . . . I 8 69.66 110.464 64.228 1 59.88 ? C3M UQ8 702 B 1 HETATM 49 C C4 UQ8 . . . I 8 72.027 109.535 66.048 1 59.88 ? C4 UQ8 702 B 1 HETATM 50 O O4 UQ8 . . . I 8 71.497 110.391 66.967 1 59.88 ? O4 UQ8 702 B 1 HETATM 51 C C4M UQ8 . . . I 8 72.311 111.494 67.257 1 59.88 ? C4M UQ8 702 B 1 HETATM 52 C C5 UQ8 . . . I 8 72.836 108.404 66.535 1 59.88 ? C5 UQ8 702 B 1 HETATM 53 O O5 UQ8 . . . I 8 73.027 108.244 67.717 1 59.88 ? O5 UQ8 702 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #