data_6RXA # _model_server_result.job_id spRHrvkZw-MONhFTynrcjQ _model_server_result.datetime_utc '2024-11-13 20:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 6RXA # _exptl.entry_id 6RXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RXA _cell.length_a 143.892 _cell.length_b 144.936 _cell.length_c 146.13 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 72.468 73.065 3 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 71.946 0 73.065 4 'crystal symmetry operation' 14_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 71.946 72.468 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 188 A GLU 188 1_555 F NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A OE1 GLU 188 A GLU 188 1_555 F NA NA . A NA 605 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 F NA NA . A NA 605 1_555 H O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 F NA NA . A NA 605 1_555 H O HOH . A HOH 713 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc5 G NA NA . A NA 606 1_555 H O HOH . A HOH 839 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RXA _atom_sites.fract_transf_matrix[1][1] 0.00695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 601 601 FMT FMT . C 2 FMT A 1 602 602 FMT FMT . D 2 FMT A 1 603 603 FMT FMT . E 3 GOL A 1 604 701 GOL GOL . F 4 NA A 1 605 801 NA NA . G 4 NA A 1 606 901 NA NA . H 5 HOH A 1 701 194 HOH HOH . H 5 HOH A 2 702 158 HOH HOH . H 5 HOH A 3 703 127 HOH HOH . H 5 HOH A 4 704 185 HOH HOH . H 5 HOH A 5 705 202 HOH HOH . H 5 HOH A 6 706 43 HOH HOH . H 5 HOH A 7 707 214 HOH HOH . H 5 HOH A 8 708 152 HOH HOH . H 5 HOH A 9 709 189 HOH HOH . H 5 HOH A 10 710 198 HOH HOH . H 5 HOH A 11 711 61 HOH HOH . H 5 HOH A 12 712 175 HOH HOH . H 5 HOH A 13 713 234 HOH HOH . H 5 HOH A 14 714 179 HOH HOH . H 5 HOH A 15 715 142 HOH HOH . H 5 HOH A 16 716 176 HOH HOH . H 5 HOH A 17 717 100 HOH HOH . H 5 HOH A 18 718 19 HOH HOH . H 5 HOH A 19 719 44 HOH HOH . H 5 HOH A 20 720 238 HOH HOH . H 5 HOH A 21 721 123 HOH HOH . H 5 HOH A 22 722 49 HOH HOH . H 5 HOH A 23 723 47 HOH HOH . H 5 HOH A 24 724 188 HOH HOH . H 5 HOH A 25 725 97 HOH HOH . H 5 HOH A 26 726 38 HOH HOH . H 5 HOH A 27 727 149 HOH HOH . H 5 HOH A 28 728 64 HOH HOH . H 5 HOH A 29 729 201 HOH HOH . H 5 HOH A 30 730 227 HOH HOH . H 5 HOH A 31 731 137 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 46 HOH HOH . H 5 HOH A 34 734 135 HOH HOH . H 5 HOH A 35 735 129 HOH HOH . H 5 HOH A 36 736 69 HOH HOH . H 5 HOH A 37 737 147 HOH HOH . H 5 HOH A 38 738 169 HOH HOH . H 5 HOH A 39 739 9 HOH HOH . H 5 HOH A 40 740 223 HOH HOH . H 5 HOH A 41 741 215 HOH HOH . H 5 HOH A 42 742 6 HOH HOH . H 5 HOH A 43 743 217 HOH HOH . H 5 HOH A 44 744 150 HOH HOH . H 5 HOH A 45 745 157 HOH HOH . H 5 HOH A 46 746 56 HOH HOH . H 5 HOH A 47 747 89 HOH HOH . H 5 HOH A 48 748 40 HOH HOH . H 5 HOH A 49 749 91 HOH HOH . H 5 HOH A 50 750 26 HOH HOH . H 5 HOH A 51 751 221 HOH HOH . H 5 HOH A 52 752 12 HOH HOH . H 5 HOH A 53 753 81 HOH HOH . H 5 HOH A 54 754 22 HOH HOH . H 5 HOH A 55 755 225 HOH HOH . H 5 HOH A 56 756 42 HOH HOH . H 5 HOH A 57 757 23 HOH HOH . H 5 HOH A 58 758 113 HOH HOH . H 5 HOH A 59 759 166 HOH HOH . H 5 HOH A 60 760 101 HOH HOH . H 5 HOH A 61 761 16 HOH HOH . H 5 HOH A 62 762 60 HOH HOH . H 5 HOH A 63 763 71 HOH HOH . H 5 HOH A 64 764 105 HOH HOH . H 5 HOH A 65 765 82 HOH HOH . H 5 HOH A 66 766 170 HOH HOH . H 5 HOH A 67 767 28 HOH HOH . H 5 HOH A 68 768 48 HOH HOH . H 5 HOH A 69 769 155 HOH HOH . H 5 HOH A 70 770 98 HOH HOH . H 5 HOH A 71 771 138 HOH HOH . H 5 HOH A 72 772 59 HOH HOH . H 5 HOH A 73 773 107 HOH HOH . H 5 HOH A 74 774 86 HOH HOH . H 5 HOH A 75 775 53 HOH HOH . H 5 HOH A 76 776 232 HOH HOH . H 5 HOH A 77 777 195 HOH HOH . H 5 HOH A 78 778 93 HOH HOH . H 5 HOH A 79 779 63 HOH HOH . H 5 HOH A 80 780 52 HOH HOH . H 5 HOH A 81 781 92 HOH HOH . H 5 HOH A 82 782 165 HOH HOH . H 5 HOH A 83 783 21 HOH HOH . H 5 HOH A 84 784 35 HOH HOH . H 5 HOH A 85 785 55 HOH HOH . H 5 HOH A 86 786 235 HOH HOH . H 5 HOH A 87 787 133 HOH HOH . H 5 HOH A 88 788 162 HOH HOH . H 5 HOH A 89 789 1 HOH HOH . H 5 HOH A 90 790 2 HOH HOH . H 5 HOH A 91 791 20 HOH HOH . H 5 HOH A 92 792 109 HOH HOH . H 5 HOH A 93 793 45 HOH HOH . H 5 HOH A 94 794 84 HOH HOH . H 5 HOH A 95 795 8 HOH HOH . H 5 HOH A 96 796 233 HOH HOH . H 5 HOH A 97 797 125 HOH HOH . H 5 HOH A 98 798 18 HOH HOH . H 5 HOH A 99 799 41 HOH HOH . H 5 HOH A 100 800 236 HOH HOH . H 5 HOH A 101 801 5 HOH HOH . H 5 HOH A 102 802 51 HOH HOH . H 5 HOH A 103 803 132 HOH HOH . H 5 HOH A 104 804 66 HOH HOH . H 5 HOH A 105 805 197 HOH HOH . H 5 HOH A 106 806 115 HOH HOH . H 5 HOH A 107 807 7 HOH HOH . H 5 HOH A 108 808 130 HOH HOH . H 5 HOH A 109 809 3 HOH HOH . H 5 HOH A 110 810 39 HOH HOH . H 5 HOH A 111 811 96 HOH HOH . H 5 HOH A 112 812 74 HOH HOH . H 5 HOH A 113 813 102 HOH HOH . H 5 HOH A 114 814 172 HOH HOH . H 5 HOH A 115 815 212 HOH HOH . H 5 HOH A 116 816 75 HOH HOH . H 5 HOH A 117 817 62 HOH HOH . H 5 HOH A 118 818 33 HOH HOH . H 5 HOH A 119 819 17 HOH HOH . H 5 HOH A 120 820 10 HOH HOH . H 5 HOH A 121 821 174 HOH HOH . H 5 HOH A 122 822 14 HOH HOH . H 5 HOH A 123 823 168 HOH HOH . H 5 HOH A 124 824 70 HOH HOH . H 5 HOH A 125 825 13 HOH HOH . H 5 HOH A 126 826 151 HOH HOH . H 5 HOH A 127 827 145 HOH HOH . H 5 HOH A 128 828 230 HOH HOH . H 5 HOH A 129 829 15 HOH HOH . H 5 HOH A 130 830 25 HOH HOH . H 5 HOH A 131 831 124 HOH HOH . H 5 HOH A 132 832 72 HOH HOH . H 5 HOH A 133 833 110 HOH HOH . H 5 HOH A 134 834 37 HOH HOH . H 5 HOH A 135 835 4 HOH HOH . H 5 HOH A 136 836 54 HOH HOH . H 5 HOH A 137 837 213 HOH HOH . H 5 HOH A 138 838 29 HOH HOH . H 5 HOH A 139 839 11 HOH HOH . H 5 HOH A 140 840 58 HOH HOH . H 5 HOH A 141 841 161 HOH HOH . H 5 HOH A 142 842 116 HOH HOH . H 5 HOH A 143 843 184 HOH HOH . H 5 HOH A 144 844 73 HOH HOH . H 5 HOH A 145 845 31 HOH HOH . H 5 HOH A 146 846 120 HOH HOH . H 5 HOH A 147 847 187 HOH HOH . H 5 HOH A 148 848 224 HOH HOH . H 5 HOH A 149 849 34 HOH HOH . H 5 HOH A 150 850 79 HOH HOH . H 5 HOH A 151 851 108 HOH HOH . H 5 HOH A 152 852 24 HOH HOH . H 5 HOH A 153 853 192 HOH HOH . H 5 HOH A 154 854 196 HOH HOH . H 5 HOH A 155 855 164 HOH HOH . H 5 HOH A 156 856 173 HOH HOH . H 5 HOH A 157 857 178 HOH HOH . H 5 HOH A 158 858 143 HOH HOH . H 5 HOH A 159 859 114 HOH HOH . H 5 HOH A 160 860 117 HOH HOH . H 5 HOH A 161 861 139 HOH HOH . H 5 HOH A 162 862 27 HOH HOH . H 5 HOH A 163 863 180 HOH HOH . H 5 HOH A 164 864 57 HOH HOH . H 5 HOH A 165 865 78 HOH HOH . H 5 HOH A 166 866 111 HOH HOH . H 5 HOH A 167 867 140 HOH HOH . H 5 HOH A 168 868 36 HOH HOH . H 5 HOH A 169 869 190 HOH HOH . H 5 HOH A 170 870 156 HOH HOH . H 5 HOH A 171 871 87 HOH HOH . H 5 HOH A 172 872 30 HOH HOH . H 5 HOH A 173 873 126 HOH HOH . H 5 HOH A 174 874 159 HOH HOH . H 5 HOH A 175 875 131 HOH HOH . H 5 HOH A 176 876 104 HOH HOH . H 5 HOH A 177 877 118 HOH HOH . H 5 HOH A 178 878 154 HOH HOH . H 5 HOH A 179 879 148 HOH HOH . H 5 HOH A 180 880 95 HOH HOH . H 5 HOH A 181 881 83 HOH HOH . H 5 HOH A 182 882 90 HOH HOH . H 5 HOH A 183 883 68 HOH HOH . H 5 HOH A 184 884 67 HOH HOH . H 5 HOH A 185 885 181 HOH HOH . H 5 HOH A 186 886 167 HOH HOH . H 5 HOH A 187 887 85 HOH HOH . H 5 HOH A 188 888 122 HOH HOH . H 5 HOH A 189 889 171 HOH HOH . H 5 HOH A 190 890 121 HOH HOH . H 5 HOH A 191 891 208 HOH HOH . H 5 HOH A 192 892 209 HOH HOH . H 5 HOH A 193 893 134 HOH HOH . H 5 HOH A 194 894 80 HOH HOH . H 5 HOH A 195 895 218 HOH HOH . H 5 HOH A 196 896 99 HOH HOH . H 5 HOH A 197 897 146 HOH HOH . H 5 HOH A 198 898 50 HOH HOH . H 5 HOH A 199 899 128 HOH HOH . H 5 HOH A 200 900 136 HOH HOH . H 5 HOH A 201 901 220 HOH HOH . H 5 HOH A 202 902 199 HOH HOH . H 5 HOH A 203 903 160 HOH HOH . H 5 HOH A 204 904 226 HOH HOH . H 5 HOH A 205 905 141 HOH HOH . H 5 HOH A 206 906 228 HOH HOH . H 5 HOH A 207 907 237 HOH HOH . H 5 HOH A 208 908 183 HOH HOH . H 5 HOH A 209 909 231 HOH HOH . H 5 HOH A 210 910 153 HOH HOH . H 5 HOH A 211 911 200 HOH HOH . H 5 HOH A 212 912 65 HOH HOH . H 5 HOH A 213 913 193 HOH HOH . H 5 HOH A 214 914 210 HOH HOH . H 5 HOH A 215 915 144 HOH HOH . H 5 HOH A 216 916 205 HOH HOH . H 5 HOH A 217 917 163 HOH HOH . H 5 HOH A 218 918 186 HOH HOH . H 5 HOH A 219 919 207 HOH HOH . H 5 HOH A 220 920 222 HOH HOH . H 5 HOH A 221 921 191 HOH HOH . H 5 HOH A 222 922 88 HOH HOH . H 5 HOH A 223 923 229 HOH HOH . H 5 HOH A 224 924 177 HOH HOH . H 5 HOH A 225 925 106 HOH HOH . H 5 HOH A 226 926 216 HOH HOH . H 5 HOH A 227 927 219 HOH HOH . H 5 HOH A 228 928 112 HOH HOH . H 5 HOH A 229 929 103 HOH HOH . H 5 HOH A 230 930 211 HOH HOH . H 5 HOH A 231 931 94 HOH HOH . H 5 HOH A 232 932 119 HOH HOH . H 5 HOH A 233 933 182 HOH HOH . H 5 HOH A 234 934 203 HOH HOH . H 5 HOH A 235 935 204 HOH HOH . H 5 HOH A 236 936 77 HOH HOH . H 5 HOH A 237 937 76 HOH HOH . H 5 HOH A 238 938 206 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 17.718 _atom_site.Cartn_y 32.05 _atom_site.Cartn_z 27.417 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 606 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #