data_6RXB # _model_server_result.job_id laUnpaeW1wKPsJlgQDQNyg _model_server_result.datetime_utc '2024-11-28 22:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 6RXB # _exptl.entry_id 6RXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RXB _cell.length_a 62.543 _cell.length_b 64.227 _cell.length_c 220.954 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,K,L,M,N,Q,S 1 1 B,D,G,H,I,J,O,P,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 L N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 125 B PHE 125 1_555 A N CSU 126 B CSU 126 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C PHE 125 B PHE 125 1_555 A N CSU 126 B CSU 126 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C CSU 126 B CSU 126 1_555 A N PRO 127 B PRO 127 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale4 A C CSU 126 B CSU 126 1_555 A N PRO 127 B PRO 127 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale5 B C PHE 125 D PHE 125 1_555 B N CSU 126 D CSU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C CSU 126 D CSU 126 1_555 B N PRO 127 D PRO 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? metalc ? metalc1 A NE2 HIS 100 B HIS 100 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 E O6 MIY . B MIY 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 E O5 MIY . B MIY 301 1_555 F MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 F MG MG . B MG 302 1_555 Q O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc5 F MG MG . B MG 302 1_555 Q O HOH . B HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc6 F MG MG . B MG 302 1_555 S O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc7 Q O HOH . B HOH 401 1_555 L MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc8 Q O HOH . B HOH 406 1_555 L MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc9 B NE2 HIS 100 D HIS 100 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc10 G O6 MIY . D MIY 301 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc11 G O5 MIY . D MIY 301 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 H MG MG . D MG 302 1_555 R O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc13 H MG MG . D MG 302 1_555 R O HOH . D HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc14 H MG MG . D MG 302 1_555 T O HOH . C HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc15 R O HOH . D HOH 404 1_555 P MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc16 C NE2 HIS 100 A HIS 100 1_555 L MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc17 K O6 MIY . A MIY 301 1_555 L MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc18 K O5 MIY . A MIY 301 1_555 L MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc19 L MG MG . A MG 302 1_555 S O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc20 D NE2 HIS 100 C HIS 100 1_555 P MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc21 O O6 MIY . C MIY 301 1_555 P MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc22 O O5 MIY . C MIY 301 1_555 P MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc23 P MG MG . C MG 302 1_555 T O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc24 P MG MG . C MG 302 1_555 T O HOH . C HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RXB _atom_sites.fract_transf_matrix[1][1] 0.015989 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MIY B 1 301 1 MIY MIY . F 4 MG B 1 302 2 MG MG . G 3 MIY D 1 301 3 MIY MIY . H 4 MG D 1 302 4 MG MG . I 5 CL D 1 303 1 CL CL . J 6 SIN D 1 304 1 SIN SIN . K 3 MIY A 1 301 2 MIY MIY . L 4 MG A 1 302 1 MG MG . M 7 EDO A 1 303 2 EDO EDO . N 5 CL A 1 304 2 CL CL . O 3 MIY C 1 301 4 MIY MIY . P 4 MG C 1 302 3 MG MG . Q 8 HOH B 1 401 32 HOH HOH . Q 8 HOH B 2 402 38 HOH HOH . Q 8 HOH B 3 403 115 HOH HOH . Q 8 HOH B 4 404 59 HOH HOH . Q 8 HOH B 5 405 20 HOH HOH . Q 8 HOH B 6 406 31 HOH HOH . Q 8 HOH B 7 407 128 HOH HOH . Q 8 HOH B 8 408 82 HOH HOH . Q 8 HOH B 9 409 35 HOH HOH . Q 8 HOH B 10 410 15 HOH HOH . Q 8 HOH B 11 411 61 HOH HOH . Q 8 HOH B 12 412 1 HOH HOH . Q 8 HOH B 13 413 67 HOH HOH . Q 8 HOH B 14 414 34 HOH HOH . Q 8 HOH B 15 415 68 HOH HOH . Q 8 HOH B 16 416 25 HOH HOH . Q 8 HOH B 17 417 75 HOH HOH . Q 8 HOH B 18 418 94 HOH HOH . Q 8 HOH B 19 419 27 HOH HOH . Q 8 HOH B 20 420 106 HOH HOH . Q 8 HOH B 21 421 19 HOH HOH . Q 8 HOH B 22 422 104 HOH HOH . Q 8 HOH B 23 423 5 HOH HOH . Q 8 HOH B 24 424 26 HOH HOH . Q 8 HOH B 25 425 70 HOH HOH . Q 8 HOH B 26 426 116 HOH HOH . Q 8 HOH B 27 427 73 HOH HOH . Q 8 HOH B 28 428 29 HOH HOH . Q 8 HOH B 29 429 71 HOH HOH . Q 8 HOH B 30 430 69 HOH HOH . Q 8 HOH B 31 431 18 HOH HOH . Q 8 HOH B 32 432 93 HOH HOH . Q 8 HOH B 33 433 37 HOH HOH . Q 8 HOH B 34 434 14 HOH HOH . Q 8 HOH B 35 435 2 HOH HOH . Q 8 HOH B 36 436 74 HOH HOH . Q 8 HOH B 37 437 4 HOH HOH . Q 8 HOH B 38 438 96 HOH HOH . Q 8 HOH B 39 439 105 HOH HOH . Q 8 HOH B 40 440 12 HOH HOH . Q 8 HOH B 41 441 72 HOH HOH . Q 8 HOH B 42 442 77 HOH HOH . Q 8 HOH B 43 443 3 HOH HOH . Q 8 HOH B 44 444 131 HOH HOH . Q 8 HOH B 45 445 125 HOH HOH . Q 8 HOH B 46 446 76 HOH HOH . Q 8 HOH B 47 447 130 HOH HOH . R 8 HOH D 1 401 48 HOH HOH . R 8 HOH D 2 402 28 HOH HOH . R 8 HOH D 3 403 84 HOH HOH . R 8 HOH D 4 404 40 HOH HOH . R 8 HOH D 5 405 107 HOH HOH . R 8 HOH D 6 406 44 HOH HOH . R 8 HOH D 7 407 43 HOH HOH . R 8 HOH D 8 408 103 HOH HOH . R 8 HOH D 9 409 16 HOH HOH . R 8 HOH D 10 410 108 HOH HOH . R 8 HOH D 11 411 42 HOH HOH . R 8 HOH D 12 412 121 HOH HOH . R 8 HOH D 13 413 101 HOH HOH . R 8 HOH D 14 414 49 HOH HOH . R 8 HOH D 15 415 83 HOH HOH . R 8 HOH D 16 416 110 HOH HOH . R 8 HOH D 17 417 102 HOH HOH . R 8 HOH D 18 418 109 HOH HOH . R 8 HOH D 19 419 133 HOH HOH . R 8 HOH D 20 420 85 HOH HOH . R 8 HOH D 21 421 54 HOH HOH . S 8 HOH A 1 401 113 HOH HOH . S 8 HOH A 2 402 36 HOH HOH . S 8 HOH A 3 403 23 HOH HOH . S 8 HOH A 4 404 17 HOH HOH . S 8 HOH A 5 405 6 HOH HOH . S 8 HOH A 6 406 21 HOH HOH . S 8 HOH A 7 407 129 HOH HOH . S 8 HOH A 8 408 8 HOH HOH . S 8 HOH A 9 409 30 HOH HOH . S 8 HOH A 10 410 13 HOH HOH . S 8 HOH A 11 411 123 HOH HOH . S 8 HOH A 12 412 86 HOH HOH . S 8 HOH A 13 413 24 HOH HOH . S 8 HOH A 14 414 92 HOH HOH . S 8 HOH A 15 415 114 HOH HOH . S 8 HOH A 16 416 127 HOH HOH . S 8 HOH A 17 417 126 HOH HOH . S 8 HOH A 18 418 58 HOH HOH . S 8 HOH A 19 419 56 HOH HOH . S 8 HOH A 20 420 60 HOH HOH . S 8 HOH A 21 421 66 HOH HOH . S 8 HOH A 22 422 64 HOH HOH . S 8 HOH A 23 423 33 HOH HOH . S 8 HOH A 24 424 7 HOH HOH . S 8 HOH A 25 425 91 HOH HOH . S 8 HOH A 26 426 55 HOH HOH . S 8 HOH A 27 427 88 HOH HOH . S 8 HOH A 28 428 87 HOH HOH . S 8 HOH A 29 429 62 HOH HOH . S 8 HOH A 30 430 90 HOH HOH . S 8 HOH A 31 431 65 HOH HOH . S 8 HOH A 32 432 63 HOH HOH . S 8 HOH A 33 433 111 HOH HOH . S 8 HOH A 34 434 57 HOH HOH . T 8 HOH C 1 401 39 HOH HOH . T 8 HOH C 2 402 132 HOH HOH . T 8 HOH C 3 403 79 HOH HOH . T 8 HOH C 4 404 9 HOH HOH . T 8 HOH C 5 405 112 HOH HOH . T 8 HOH C 6 406 47 HOH HOH . T 8 HOH C 7 407 22 HOH HOH . T 8 HOH C 8 408 120 HOH HOH . T 8 HOH C 9 409 53 HOH HOH . T 8 HOH C 10 410 78 HOH HOH . T 8 HOH C 11 411 51 HOH HOH . T 8 HOH C 12 412 81 HOH HOH . T 8 HOH C 13 413 50 HOH HOH . T 8 HOH C 14 414 122 HOH HOH . T 8 HOH C 15 415 124 HOH HOH . T 8 HOH C 16 416 119 HOH HOH . T 8 HOH C 17 417 134 HOH HOH . T 8 HOH C 18 418 52 HOH HOH . T 8 HOH C 19 419 80 HOH HOH . T 8 HOH C 20 420 41 HOH HOH . T 8 HOH C 21 421 118 HOH HOH . T 8 HOH C 22 422 97 HOH HOH . T 8 HOH C 23 423 100 HOH HOH . T 8 HOH C 24 424 117 HOH HOH . T 8 HOH C 25 425 98 HOH HOH . T 8 HOH C 26 426 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.558 _atom_site.Cartn_y -14.937 _atom_site.Cartn_z -45.969 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 186 _model_server_stats.create_model_time_ms 101 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 1 #