data_6RXS # _model_server_result.job_id KD2Sztjxt_ZzwNBDcjB1_A _model_server_result.datetime_utc '2024-10-25 20:25:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 6RXS # _exptl.entry_id 6RXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.77 _cell.angle_gamma 90 _cell.entry_id 6RXS _cell.length_a 90.19 _cell.length_b 79.05 _cell.length_c 39.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ALA 4 B ALA 15 1_555 B N ALY 5 B ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 B C ALY 5 B ALY 16 1_555 B N ARG 6 B ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 130 A CYS 155 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A SG CYS 149 A CYS 174 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc3 A SG CYS 151 A CYS 176 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A SG CYS 152 A CYS 177 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 6RXS _atom_sites.fract_transf_matrix[1][1] 0.011088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 500 ZN ZN . D 4 GOL A 1 302 1 GOL GOL . E 4 GOL A 1 303 2 GOL GOL . F 4 GOL B 1 101 3 GOL GOL . G 5 HOH A 1 401 188 HOH HOH . G 5 HOH A 2 402 148 HOH HOH . G 5 HOH A 3 403 182 HOH HOH . G 5 HOH A 4 404 207 HOH HOH . G 5 HOH A 5 405 122 HOH HOH . G 5 HOH A 6 406 131 HOH HOH . G 5 HOH A 7 407 87 HOH HOH . G 5 HOH A 8 408 171 HOH HOH . G 5 HOH A 9 409 99 HOH HOH . G 5 HOH A 10 410 221 HOH HOH . G 5 HOH A 11 411 212 HOH HOH . G 5 HOH A 12 412 203 HOH HOH . G 5 HOH A 13 413 117 HOH HOH . G 5 HOH A 14 414 16 HOH HOH . G 5 HOH A 15 415 145 HOH HOH . G 5 HOH A 16 416 116 HOH HOH . G 5 HOH A 17 417 119 HOH HOH . G 5 HOH A 18 418 220 HOH HOH . G 5 HOH A 19 419 138 HOH HOH . G 5 HOH A 20 420 146 HOH HOH . G 5 HOH A 21 421 109 HOH HOH . G 5 HOH A 22 422 56 HOH HOH . G 5 HOH A 23 423 31 HOH HOH . G 5 HOH A 24 424 3 HOH HOH . G 5 HOH A 25 425 19 HOH HOH . G 5 HOH A 26 426 73 HOH HOH . G 5 HOH A 27 427 125 HOH HOH . G 5 HOH A 28 428 84 HOH HOH . G 5 HOH A 29 429 38 HOH HOH . G 5 HOH A 30 430 26 HOH HOH . G 5 HOH A 31 431 101 HOH HOH . G 5 HOH A 32 432 208 HOH HOH . G 5 HOH A 33 433 33 HOH HOH . G 5 HOH A 34 434 190 HOH HOH . G 5 HOH A 35 435 180 HOH HOH . G 5 HOH A 36 436 75 HOH HOH . G 5 HOH A 37 437 191 HOH HOH . G 5 HOH A 38 438 61 HOH HOH . G 5 HOH A 39 439 57 HOH HOH . G 5 HOH A 40 440 72 HOH HOH . G 5 HOH A 41 441 142 HOH HOH . G 5 HOH A 42 442 8 HOH HOH . G 5 HOH A 43 443 159 HOH HOH . G 5 HOH A 44 444 86 HOH HOH . G 5 HOH A 45 445 144 HOH HOH . G 5 HOH A 46 446 167 HOH HOH . G 5 HOH A 47 447 10 HOH HOH . G 5 HOH A 48 448 67 HOH HOH . G 5 HOH A 49 449 42 HOH HOH . G 5 HOH A 50 450 28 HOH HOH . G 5 HOH A 51 451 139 HOH HOH . G 5 HOH A 52 452 224 HOH HOH . G 5 HOH A 53 453 9 HOH HOH . G 5 HOH A 54 454 5 HOH HOH . G 5 HOH A 55 455 13 HOH HOH . G 5 HOH A 56 456 83 HOH HOH . G 5 HOH A 57 457 91 HOH HOH . G 5 HOH A 58 458 94 HOH HOH . G 5 HOH A 59 459 27 HOH HOH . G 5 HOH A 60 460 51 HOH HOH . G 5 HOH A 61 461 102 HOH HOH . G 5 HOH A 62 462 217 HOH HOH . G 5 HOH A 63 463 127 HOH HOH . G 5 HOH A 64 464 178 HOH HOH . G 5 HOH A 65 465 4 HOH HOH . G 5 HOH A 66 466 17 HOH HOH . G 5 HOH A 67 467 140 HOH HOH . G 5 HOH A 68 468 68 HOH HOH . G 5 HOH A 69 469 74 HOH HOH . G 5 HOH A 70 470 47 HOH HOH . G 5 HOH A 71 471 32 HOH HOH . G 5 HOH A 72 472 168 HOH HOH . G 5 HOH A 73 473 11 HOH HOH . G 5 HOH A 74 474 70 HOH HOH . G 5 HOH A 75 475 14 HOH HOH . G 5 HOH A 76 476 88 HOH HOH . G 5 HOH A 77 477 1 HOH HOH . G 5 HOH A 78 478 199 HOH HOH . G 5 HOH A 79 479 37 HOH HOH . G 5 HOH A 80 480 154 HOH HOH . G 5 HOH A 81 481 141 HOH HOH . G 5 HOH A 82 482 66 HOH HOH . G 5 HOH A 83 483 175 HOH HOH . G 5 HOH A 84 484 79 HOH HOH . G 5 HOH A 85 485 25 HOH HOH . G 5 HOH A 86 486 95 HOH HOH . G 5 HOH A 87 487 18 HOH HOH . G 5 HOH A 88 488 22 HOH HOH . G 5 HOH A 89 489 111 HOH HOH . G 5 HOH A 90 490 124 HOH HOH . G 5 HOH A 91 491 12 HOH HOH . G 5 HOH A 92 492 53 HOH HOH . G 5 HOH A 93 493 147 HOH HOH . G 5 HOH A 94 494 108 HOH HOH . G 5 HOH A 95 495 129 HOH HOH . G 5 HOH A 96 496 7 HOH HOH . G 5 HOH A 97 497 137 HOH HOH . G 5 HOH A 98 498 189 HOH HOH . G 5 HOH A 99 499 52 HOH HOH . G 5 HOH A 100 500 40 HOH HOH . G 5 HOH A 101 501 105 HOH HOH . G 5 HOH A 102 502 89 HOH HOH . G 5 HOH A 103 503 49 HOH HOH . G 5 HOH A 104 504 2 HOH HOH . G 5 HOH A 105 505 50 HOH HOH . G 5 HOH A 106 506 210 HOH HOH . G 5 HOH A 107 507 185 HOH HOH . G 5 HOH A 108 508 6 HOH HOH . G 5 HOH A 109 509 41 HOH HOH . G 5 HOH A 110 510 118 HOH HOH . G 5 HOH A 111 511 215 HOH HOH . G 5 HOH A 112 512 192 HOH HOH . G 5 HOH A 113 513 62 HOH HOH . G 5 HOH A 114 514 93 HOH HOH . G 5 HOH A 115 515 92 HOH HOH . G 5 HOH A 116 516 48 HOH HOH . G 5 HOH A 117 517 222 HOH HOH . G 5 HOH A 118 518 134 HOH HOH . G 5 HOH A 119 519 77 HOH HOH . G 5 HOH A 120 520 143 HOH HOH . G 5 HOH A 121 521 204 HOH HOH . G 5 HOH A 122 522 80 HOH HOH . G 5 HOH A 123 523 24 HOH HOH . G 5 HOH A 124 524 15 HOH HOH . G 5 HOH A 125 525 44 HOH HOH . G 5 HOH A 126 526 81 HOH HOH . G 5 HOH A 127 527 63 HOH HOH . G 5 HOH A 128 528 205 HOH HOH . G 5 HOH A 129 529 165 HOH HOH . G 5 HOH A 130 530 39 HOH HOH . G 5 HOH A 131 531 211 HOH HOH . G 5 HOH A 132 532 181 HOH HOH . G 5 HOH A 133 533 177 HOH HOH . G 5 HOH A 134 534 197 HOH HOH . G 5 HOH A 135 535 35 HOH HOH . G 5 HOH A 136 536 78 HOH HOH . G 5 HOH A 137 537 104 HOH HOH . G 5 HOH A 138 538 82 HOH HOH . G 5 HOH A 139 539 58 HOH HOH . G 5 HOH A 140 540 150 HOH HOH . G 5 HOH A 141 541 30 HOH HOH . G 5 HOH A 142 542 156 HOH HOH . G 5 HOH A 143 543 100 HOH HOH . G 5 HOH A 144 544 34 HOH HOH . G 5 HOH A 145 545 162 HOH HOH . G 5 HOH A 146 546 65 HOH HOH . G 5 HOH A 147 547 179 HOH HOH . G 5 HOH A 148 548 157 HOH HOH . G 5 HOH A 149 549 64 HOH HOH . G 5 HOH A 150 550 103 HOH HOH . G 5 HOH A 151 551 160 HOH HOH . G 5 HOH A 152 552 186 HOH HOH . G 5 HOH A 153 553 206 HOH HOH . G 5 HOH A 154 554 130 HOH HOH . G 5 HOH A 155 555 97 HOH HOH . G 5 HOH A 156 556 135 HOH HOH . G 5 HOH A 157 557 174 HOH HOH . G 5 HOH A 158 558 152 HOH HOH . G 5 HOH A 159 559 29 HOH HOH . G 5 HOH A 160 560 187 HOH HOH . G 5 HOH A 161 561 120 HOH HOH . G 5 HOH A 162 562 69 HOH HOH . G 5 HOH A 163 563 172 HOH HOH . G 5 HOH A 164 564 85 HOH HOH . G 5 HOH A 165 565 43 HOH HOH . G 5 HOH A 166 566 164 HOH HOH . G 5 HOH A 167 567 110 HOH HOH . G 5 HOH A 168 568 173 HOH HOH . G 5 HOH A 169 569 151 HOH HOH . G 5 HOH A 170 570 114 HOH HOH . G 5 HOH A 171 571 71 HOH HOH . G 5 HOH A 172 572 36 HOH HOH . G 5 HOH A 173 573 54 HOH HOH . G 5 HOH A 174 574 90 HOH HOH . G 5 HOH A 175 575 213 HOH HOH . G 5 HOH A 176 576 176 HOH HOH . G 5 HOH A 177 577 121 HOH HOH . G 5 HOH A 178 578 194 HOH HOH . G 5 HOH A 179 579 20 HOH HOH . G 5 HOH A 180 580 115 HOH HOH . G 5 HOH A 181 581 128 HOH HOH . G 5 HOH A 182 582 153 HOH HOH . G 5 HOH A 183 583 195 HOH HOH . G 5 HOH A 184 584 218 HOH HOH . G 5 HOH A 185 585 155 HOH HOH . G 5 HOH A 186 586 169 HOH HOH . G 5 HOH A 187 587 209 HOH HOH . G 5 HOH A 188 588 200 HOH HOH . G 5 HOH A 189 589 214 HOH HOH . G 5 HOH A 190 590 132 HOH HOH . G 5 HOH A 191 591 45 HOH HOH . G 5 HOH A 192 592 223 HOH HOH . G 5 HOH A 193 593 161 HOH HOH . G 5 HOH A 194 594 158 HOH HOH . G 5 HOH A 195 595 201 HOH HOH . G 5 HOH A 196 596 126 HOH HOH . G 5 HOH A 197 597 123 HOH HOH . G 5 HOH A 198 598 170 HOH HOH . G 5 HOH A 199 599 46 HOH HOH . G 5 HOH A 200 600 60 HOH HOH . G 5 HOH A 201 601 196 HOH HOH . G 5 HOH A 202 602 216 HOH HOH . G 5 HOH A 203 603 225 HOH HOH . G 5 HOH A 204 604 112 HOH HOH . G 5 HOH A 205 605 166 HOH HOH . H 5 HOH B 1 201 96 HOH HOH . H 5 HOH B 2 202 149 HOH HOH . H 5 HOH B 3 203 59 HOH HOH . H 5 HOH B 4 204 133 HOH HOH . H 5 HOH B 5 205 21 HOH HOH . H 5 HOH B 6 206 107 HOH HOH . H 5 HOH B 7 207 76 HOH HOH . H 5 HOH B 8 208 23 HOH HOH . H 5 HOH B 9 209 98 HOH HOH . H 5 HOH B 10 210 219 HOH HOH . H 5 HOH B 11 211 184 HOH HOH . H 5 HOH B 12 212 136 HOH HOH . H 5 HOH B 13 213 113 HOH HOH . H 5 HOH B 14 214 106 HOH HOH . H 5 HOH B 15 215 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -23.372 10.629 19.698 1 41.74 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . F 4 -22.786 9.609 18.917 1 43.18 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . F 4 -22.475 11.842 19.849 1 52.02 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . F 4 -21.295 11.617 19.121 1 44.45 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . F 4 -23.18 13.108 19.358 1 44.77 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . F 4 -22.656 14.251 19.997 1 48.34 ? O3 GOL 101 B 1 HETATM 7 H H11 GOL . . . F 4 -23.605 10.232 20.686 1 50.09 ? H11 GOL 101 B 1 HETATM 8 H H12 GOL . . . F 4 -24.311 10.935 19.238 1 50.09 ? H12 GOL 101 B 1 HETATM 9 H HO1 GOL . . . F 4 -23.376 8.826 18.906 1 51.82 ? HO1 GOL 101 B 1 HETATM 10 H H2 GOL . . . F 4 -22.236 11.967 20.905 1 62.43 ? H2 GOL 101 B 1 HETATM 11 H HO2 GOL . . . F 4 -21.511 11.522 18.17 1 53.34 ? HO2 GOL 101 B 1 HETATM 12 H H31 GOL . . . F 4 -23.051 13.202 18.28 1 53.72 ? H31 GOL 101 B 1 HETATM 13 H H32 GOL . . . F 4 -24.248 13.033 19.563 1 53.72 ? H32 GOL 101 B 1 HETATM 14 H HO3 GOL . . . F 4 -23.25 15.014 19.84 1 58 ? HO3 GOL 101 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #