data_6RYG # _model_server_result.job_id pv1X23ROOmDp-6swD3c3Ow _model_server_result.datetime_utc '2025-07-03 08:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ryg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 6RYG # _exptl.entry_id 6RYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RYG _cell.length_a 50.17 _cell.length_b 50.17 _cell.length_c 52.247 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 255 1_555 A SG CYS 126 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 104 A CYS 327 1_555 A SG CYS 118 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 92 A GLU 315 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 A OD1 ASN 94 A ASN 317 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc3 A OE1 GLU 102 A GLU 325 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A OD1 ASN 114 A ASN 337 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc5 A O ASP 115 A ASP 338 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc6 A OD1 ASP 115 A ASP 338 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B CA CA . A CA 400 1_555 C O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RYG _atom_sites.fract_transf_matrix[1][1] 0.019932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 400 400 CA CA . C 3 HOH A 1 501 111 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 63 HOH HOH . C 3 HOH A 4 504 121 HOH HOH . C 3 HOH A 5 505 35 HOH HOH . C 3 HOH A 6 506 58 HOH HOH . C 3 HOH A 7 507 78 HOH HOH . C 3 HOH A 8 508 60 HOH HOH . C 3 HOH A 9 509 37 HOH HOH . C 3 HOH A 10 510 12 HOH HOH . C 3 HOH A 11 511 130 HOH HOH . C 3 HOH A 12 512 26 HOH HOH . C 3 HOH A 13 513 16 HOH HOH . C 3 HOH A 14 514 107 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 82 HOH HOH . C 3 HOH A 17 517 44 HOH HOH . C 3 HOH A 18 518 109 HOH HOH . C 3 HOH A 19 519 34 HOH HOH . C 3 HOH A 20 520 19 HOH HOH . C 3 HOH A 21 521 68 HOH HOH . C 3 HOH A 22 522 55 HOH HOH . C 3 HOH A 23 523 98 HOH HOH . C 3 HOH A 24 524 25 HOH HOH . C 3 HOH A 25 525 71 HOH HOH . C 3 HOH A 26 526 52 HOH HOH . C 3 HOH A 27 527 101 HOH HOH . C 3 HOH A 28 528 48 HOH HOH . C 3 HOH A 29 529 15 HOH HOH . C 3 HOH A 30 530 38 HOH HOH . C 3 HOH A 31 531 59 HOH HOH . C 3 HOH A 32 532 75 HOH HOH . C 3 HOH A 33 533 1 HOH HOH . C 3 HOH A 34 534 141 HOH HOH . C 3 HOH A 35 535 4 HOH HOH . C 3 HOH A 36 536 122 HOH HOH . C 3 HOH A 37 537 50 HOH HOH . C 3 HOH A 38 538 116 HOH HOH . C 3 HOH A 39 539 64 HOH HOH . C 3 HOH A 40 540 11 HOH HOH . C 3 HOH A 41 541 23 HOH HOH . C 3 HOH A 42 542 9 HOH HOH . C 3 HOH A 43 543 54 HOH HOH . C 3 HOH A 44 544 85 HOH HOH . C 3 HOH A 45 545 32 HOH HOH . C 3 HOH A 46 546 128 HOH HOH . C 3 HOH A 47 547 22 HOH HOH . C 3 HOH A 48 548 90 HOH HOH . C 3 HOH A 49 549 7 HOH HOH . C 3 HOH A 50 550 97 HOH HOH . C 3 HOH A 51 551 28 HOH HOH . C 3 HOH A 52 552 3 HOH HOH . C 3 HOH A 53 553 51 HOH HOH . C 3 HOH A 54 554 95 HOH HOH . C 3 HOH A 55 555 5 HOH HOH . C 3 HOH A 56 556 114 HOH HOH . C 3 HOH A 57 557 103 HOH HOH . C 3 HOH A 58 558 45 HOH HOH . C 3 HOH A 59 559 36 HOH HOH . C 3 HOH A 60 560 20 HOH HOH . C 3 HOH A 61 561 126 HOH HOH . C 3 HOH A 62 562 42 HOH HOH . C 3 HOH A 63 563 6 HOH HOH . C 3 HOH A 64 564 74 HOH HOH . C 3 HOH A 65 565 29 HOH HOH . C 3 HOH A 66 566 61 HOH HOH . C 3 HOH A 67 567 92 HOH HOH . C 3 HOH A 68 568 53 HOH HOH . C 3 HOH A 69 569 80 HOH HOH . C 3 HOH A 70 570 40 HOH HOH . C 3 HOH A 71 571 39 HOH HOH . C 3 HOH A 72 572 65 HOH HOH . C 3 HOH A 73 573 57 HOH HOH . C 3 HOH A 74 574 62 HOH HOH . C 3 HOH A 75 575 49 HOH HOH . C 3 HOH A 76 576 136 HOH HOH . C 3 HOH A 77 577 10 HOH HOH . C 3 HOH A 78 578 30 HOH HOH . C 3 HOH A 79 579 79 HOH HOH . C 3 HOH A 80 580 99 HOH HOH . C 3 HOH A 81 581 31 HOH HOH . C 3 HOH A 82 582 77 HOH HOH . C 3 HOH A 83 583 41 HOH HOH . C 3 HOH A 84 584 13 HOH HOH . C 3 HOH A 85 585 21 HOH HOH . C 3 HOH A 86 586 83 HOH HOH . C 3 HOH A 87 587 86 HOH HOH . C 3 HOH A 88 588 81 HOH HOH . C 3 HOH A 89 589 135 HOH HOH . C 3 HOH A 90 590 24 HOH HOH . C 3 HOH A 91 591 8 HOH HOH . C 3 HOH A 92 592 72 HOH HOH . C 3 HOH A 93 593 67 HOH HOH . C 3 HOH A 94 594 33 HOH HOH . C 3 HOH A 95 595 18 HOH HOH . C 3 HOH A 96 596 66 HOH HOH . C 3 HOH A 97 597 119 HOH HOH . C 3 HOH A 98 598 124 HOH HOH . C 3 HOH A 99 599 43 HOH HOH . C 3 HOH A 100 600 46 HOH HOH . C 3 HOH A 101 601 73 HOH HOH . C 3 HOH A 102 602 139 HOH HOH . C 3 HOH A 103 603 76 HOH HOH . C 3 HOH A 104 604 69 HOH HOH . C 3 HOH A 105 605 14 HOH HOH . C 3 HOH A 106 606 104 HOH HOH . C 3 HOH A 107 607 56 HOH HOH . C 3 HOH A 108 608 70 HOH HOH . C 3 HOH A 109 609 131 HOH HOH . C 3 HOH A 110 610 118 HOH HOH . C 3 HOH A 111 611 27 HOH HOH . C 3 HOH A 112 612 134 HOH HOH . C 3 HOH A 113 613 117 HOH HOH . C 3 HOH A 114 614 91 HOH HOH . C 3 HOH A 115 615 140 HOH HOH . C 3 HOH A 116 616 89 HOH HOH . C 3 HOH A 117 617 87 HOH HOH . C 3 HOH A 118 618 129 HOH HOH . C 3 HOH A 119 619 132 HOH HOH . C 3 HOH A 120 620 133 HOH HOH . C 3 HOH A 121 621 47 HOH HOH . C 3 HOH A 122 622 112 HOH HOH . C 3 HOH A 123 623 138 HOH HOH . C 3 HOH A 124 624 113 HOH HOH . C 3 HOH A 125 625 120 HOH HOH . C 3 HOH A 126 626 137 HOH HOH . C 3 HOH A 127 627 125 HOH HOH . C 3 HOH A 128 628 106 HOH HOH . C 3 HOH A 129 629 127 HOH HOH . C 3 HOH A 130 630 96 HOH HOH . C 3 HOH A 131 631 110 HOH HOH . C 3 HOH A 132 632 94 HOH HOH . C 3 HOH A 133 633 84 HOH HOH . C 3 HOH A 134 634 102 HOH HOH . C 3 HOH A 135 635 88 HOH HOH . C 3 HOH A 136 636 105 HOH HOH . C 3 HOH A 137 637 108 HOH HOH . C 3 HOH A 138 638 123 HOH HOH . C 3 HOH A 139 639 100 HOH HOH . C 3 HOH A 140 640 115 HOH HOH . C 3 HOH A 141 641 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 44.847 _atom_site.Cartn_y 22.972 _atom_site.Cartn_z -9.706 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #