data_6RYJ # _model_server_result.job_id 8lH5hneSl59Z0dxX4lJU3w _model_server_result.datetime_utc '2025-03-12 20:08:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ryj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6RYJ # _exptl.entry_id 6RYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RYJ _cell.length_a 50.822 _cell.length_b 50.822 _cell.length_c 52.837 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 32 A CYS 255 1_555 A SG CYS 126 A CYS 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf2 A SG CYS 104 A CYS 327 1_555 A SG CYS 118 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A OD1 ASP 68 A ASP 291 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc2 A OD2 ASP 68 A ASP 291 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A OE1 GLU 72 A GLU 295 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc4 A OE2 GLU 72 A GLU 295 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc5 A OE1 GLU 92 A GLU 315 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc6 A OD1 ASN 94 A ASN 317 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc7 A OD1 ASN 95 A ASN 318 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc8 A OE1 GLU 102 A GLU 325 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 A O GLU 102 A GLU 325 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc10 A OD1 ASN 103 A ASN 326 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc11 A OD1 ASN 114 A ASN 337 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc12 A O ASP 115 A ASP 338 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc13 A OD1 ASP 115 A ASP 338 1_555 B CA CA . A CA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc14 B CA CA . A CA 400 1_555 D O1 EDO . A EDO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc15 B CA CA . A CA 400 1_555 D O2 EDO . A EDO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc16 C CA CA . A CA 401 1_555 E O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RYJ _atom_sites.fract_transf_matrix[1][1] 0.019677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 400 400 CA CA . C 2 CA A 1 401 401 CA CA . D 3 EDO A 1 402 402 EDO EDO . E 4 HOH A 1 501 32 HOH HOH . E 4 HOH A 2 502 97 HOH HOH . E 4 HOH A 3 503 95 HOH HOH . E 4 HOH A 4 504 3 HOH HOH . E 4 HOH A 5 505 40 HOH HOH . E 4 HOH A 6 506 37 HOH HOH . E 4 HOH A 7 507 55 HOH HOH . E 4 HOH A 8 508 45 HOH HOH . E 4 HOH A 9 509 26 HOH HOH . E 4 HOH A 10 510 100 HOH HOH . E 4 HOH A 11 511 93 HOH HOH . E 4 HOH A 12 512 78 HOH HOH . E 4 HOH A 13 513 79 HOH HOH . E 4 HOH A 14 514 12 HOH HOH . E 4 HOH A 15 515 14 HOH HOH . E 4 HOH A 16 516 83 HOH HOH . E 4 HOH A 17 517 33 HOH HOH . E 4 HOH A 18 518 34 HOH HOH . E 4 HOH A 19 519 27 HOH HOH . E 4 HOH A 20 520 30 HOH HOH . E 4 HOH A 21 521 38 HOH HOH . E 4 HOH A 22 522 2 HOH HOH . E 4 HOH A 23 523 44 HOH HOH . E 4 HOH A 24 524 58 HOH HOH . E 4 HOH A 25 525 31 HOH HOH . E 4 HOH A 26 526 35 HOH HOH . E 4 HOH A 27 527 56 HOH HOH . E 4 HOH A 28 528 36 HOH HOH . E 4 HOH A 29 529 16 HOH HOH . E 4 HOH A 30 530 74 HOH HOH . E 4 HOH A 31 531 46 HOH HOH . E 4 HOH A 32 532 1 HOH HOH . E 4 HOH A 33 533 8 HOH HOH . E 4 HOH A 34 534 7 HOH HOH . E 4 HOH A 35 535 6 HOH HOH . E 4 HOH A 36 536 53 HOH HOH . E 4 HOH A 37 537 90 HOH HOH . E 4 HOH A 38 538 50 HOH HOH . E 4 HOH A 39 539 76 HOH HOH . E 4 HOH A 40 540 59 HOH HOH . E 4 HOH A 41 541 4 HOH HOH . E 4 HOH A 42 542 21 HOH HOH . E 4 HOH A 43 543 17 HOH HOH . E 4 HOH A 44 544 52 HOH HOH . E 4 HOH A 45 545 29 HOH HOH . E 4 HOH A 46 546 47 HOH HOH . E 4 HOH A 47 547 86 HOH HOH . E 4 HOH A 48 548 18 HOH HOH . E 4 HOH A 49 549 11 HOH HOH . E 4 HOH A 50 550 20 HOH HOH . E 4 HOH A 51 551 5 HOH HOH . E 4 HOH A 52 552 42 HOH HOH . E 4 HOH A 53 553 39 HOH HOH . E 4 HOH A 54 554 54 HOH HOH . E 4 HOH A 55 555 13 HOH HOH . E 4 HOH A 56 556 25 HOH HOH . E 4 HOH A 57 557 65 HOH HOH . E 4 HOH A 58 558 70 HOH HOH . E 4 HOH A 59 559 23 HOH HOH . E 4 HOH A 60 560 15 HOH HOH . E 4 HOH A 61 561 84 HOH HOH . E 4 HOH A 62 562 43 HOH HOH . E 4 HOH A 63 563 10 HOH HOH . E 4 HOH A 64 564 87 HOH HOH . E 4 HOH A 65 565 19 HOH HOH . E 4 HOH A 66 566 22 HOH HOH . E 4 HOH A 67 567 94 HOH HOH . E 4 HOH A 68 568 51 HOH HOH . E 4 HOH A 69 569 92 HOH HOH . E 4 HOH A 70 570 9 HOH HOH . E 4 HOH A 71 571 41 HOH HOH . E 4 HOH A 72 572 69 HOH HOH . E 4 HOH A 73 573 49 HOH HOH . E 4 HOH A 74 574 62 HOH HOH . E 4 HOH A 75 575 57 HOH HOH . E 4 HOH A 76 576 28 HOH HOH . E 4 HOH A 77 577 61 HOH HOH . E 4 HOH A 78 578 82 HOH HOH . E 4 HOH A 79 579 85 HOH HOH . E 4 HOH A 80 580 24 HOH HOH . E 4 HOH A 81 581 98 HOH HOH . E 4 HOH A 82 582 48 HOH HOH . E 4 HOH A 83 583 67 HOH HOH . E 4 HOH A 84 584 64 HOH HOH . E 4 HOH A 85 585 81 HOH HOH . E 4 HOH A 86 586 99 HOH HOH . E 4 HOH A 87 587 88 HOH HOH . E 4 HOH A 88 588 71 HOH HOH . E 4 HOH A 89 589 91 HOH HOH . E 4 HOH A 90 590 80 HOH HOH . E 4 HOH A 91 591 72 HOH HOH . E 4 HOH A 92 592 89 HOH HOH . E 4 HOH A 93 593 75 HOH HOH . E 4 HOH A 94 594 60 HOH HOH . E 4 HOH A 95 595 101 HOH HOH . E 4 HOH A 96 596 96 HOH HOH . E 4 HOH A 97 597 66 HOH HOH . E 4 HOH A 98 598 73 HOH HOH . E 4 HOH A 99 599 63 HOH HOH . E 4 HOH A 100 600 77 HOH HOH . E 4 HOH A 101 601 68 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 38.082 _atom_site.Cartn_y 19.225 _atom_site.Cartn_z -6.92 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 557 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #