data_6RZ4 # _model_server_result.job_id M2UUYpDv-opWluknkEK8lg _model_server_result.datetime_utc '2024-11-02 05:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 6RZ4 # _exptl.entry_id 6RZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 481.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pranlukast _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.47 _cell.angle_gamma 90 _cell.entry_id 6RZ4 _cell.length_a 58.63 _cell.length_b 45.35 _cell.length_c 86.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 14 1_555 A SG CYS 379 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 99 A CYS 96 1_555 A SG CYS 176 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 72 A ASP 69 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc2 A OG SER 113 A SER 110 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 A O ASN 399 A ASN 287 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc4 A OD1 ASN 399 A ASN 287 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc5 A OD2 ASP 403 A ASP 291 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'C27 H23 N5 O4' _chem_comp.formula_weight 481.503 _chem_comp.id KNT _chem_comp.mon_nstd_flag . _chem_comp.name pranlukast _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 KNT doub 173 n y C21 C20 KNT sing 174 n y C22 C23 KNT sing 175 n y C20 C19 KNT doub 176 n y C23 C24 KNT doub 177 n y C19 C24 KNT sing 178 n y C19 C18 KNT sing 179 n n C18 C17 KNT sing 180 n n C17 C16 KNT sing 181 n n C16 C15 KNT sing 182 n n C15 O3 KNT sing 183 n n O3 C14 KNT sing 184 n n C14 C13 KNT doub 185 n y C14 C25 KNT sing 186 n y C13 C12 KNT sing 187 n y C25 C26 KNT doub 188 n y C12 C11 KNT doub 189 n y N2 N3 KNT doub 190 n y N2 N1 KNT sing 191 n y C26 C11 KNT sing 192 n y N3 N4 KNT sing 193 n y C11 C KNT sing 194 n n N1 C9 KNT sing 195 n y N4 C9 KNT doub 196 n y C9 C8 KNT sing 197 n n C N KNT sing 198 n n C O KNT doub 199 n n N C1 KNT sing 200 n n O2 C8 KNT sing 201 n n O2 C10 KNT sing 202 n n C8 C7 KNT doub 203 n n C1 C10 KNT doub 204 n y C1 C2 KNT sing 205 n y C10 C5 KNT sing 206 n y C7 C6 KNT sing 207 n n C2 C3 KNT doub 208 n y C5 C6 KNT sing 209 n n C5 C4 KNT doub 210 n y C6 O1 KNT doub 211 n n C3 C4 KNT sing 212 n y N1 H1 KNT sing 213 n n C4 H2 KNT sing 214 n n C7 H3 KNT sing 215 n n C13 H4 KNT sing 216 n n C15 H5 KNT sing 217 n n C15 H6 KNT sing 218 n n C17 H7 KNT sing 219 n n C17 H8 KNT sing 220 n n C20 H9 KNT sing 221 n n C21 H10 KNT sing 222 n n C22 H11 KNT sing 223 n n C24 H12 KNT sing 224 n n C26 H13 KNT sing 225 n n C3 H14 KNT sing 226 n n C2 H15 KNT sing 227 n n N H16 KNT sing 228 n n C25 H17 KNT sing 229 n n C12 H18 KNT sing 230 n n C16 H19 KNT sing 231 n n C16 H20 KNT sing 232 n n C18 H21 KNT sing 233 n n C18 H22 KNT sing 234 n n C23 H23 KNT sing 235 n n # _atom_sites.entry_id 6RZ4 _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000438 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNT A 1 2001 2001 KNT LIG . C 3 NA A 1 2002 2002 NA NA . D 4 OLC A 1 2003 1 OLC OLC . E 4 OLC A 1 2004 2 OLC OLC . F 4 OLC A 1 2005 3 OLC OLC . G 4 OLC A 1 2006 4 OLC OLC . H 4 OLC A 1 2007 5 OLC OLC . I 4 OLC A 1 2008 6 OLC OLC . J 4 OLC A 1 2009 7 OLC OLC . K 4 OLC A 1 2010 9 OLC OLC . L 4 OLC A 1 2011 10 OLC OLC . M 5 OLA A 1 2012 101 OLA OLA . N 6 HOH A 1 2101 2104 HOH HOH . N 6 HOH A 2 2102 2117 HOH HOH . N 6 HOH A 3 2103 2109 HOH HOH . N 6 HOH A 4 2104 2110 HOH HOH . N 6 HOH A 5 2105 2114 HOH HOH . N 6 HOH A 6 2106 2106 HOH HOH . N 6 HOH A 7 2107 2102 HOH HOH . N 6 HOH A 8 2108 2116 HOH HOH . N 6 HOH A 9 2109 2107 HOH HOH . N 6 HOH A 10 2110 2112 HOH HOH . N 6 HOH A 11 2111 2101 HOH HOH . N 6 HOH A 12 2112 2108 HOH HOH . N 6 HOH A 13 2113 2111 HOH HOH . N 6 HOH A 14 2114 2115 HOH HOH . N 6 HOH A 15 2115 2105 HOH HOH . N 6 HOH A 16 2116 2103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KNT . . . B 2 42.256 24.059 58.202 1 50.78 ? N1 KNT 2001 A 1 HETATM 2 N N3 KNT . . . B 2 43.516 22.291 58.142 1 50.47 ? N3 KNT 2001 A 1 HETATM 3 C C4 KNT . . . B 2 38.081 25.019 63.011 1 47.55 ? C4 KNT 2001 A 1 HETATM 4 C C5 KNT . . . B 2 39.082 24.533 62.166 1 47.86 ? C5 KNT 2001 A 1 HETATM 5 C C6 KNT . . . B 2 39.758 23.213 62.316 1 48.24 ? C6 KNT 2001 A 1 HETATM 6 C C7 KNT . . . B 2 40.744 22.795 61.414 1 48.15 ? C7 KNT 2001 A 1 HETATM 7 C C8 KNT . . . B 2 41.081 23.64 60.333 1 48.66 ? C8 KNT 2001 A 1 HETATM 8 C C10 KNT . . . B 2 39.488 25.316 61.075 1 47.74 ? C10 KNT 2001 A 1 HETATM 9 C C13 KNT . . . B 2 40.875 29.007 56.119 1 48.29 ? C13 KNT 2001 A 1 HETATM 10 C C15 KNT . . . B 2 40.925 32.159 54.267 1 52.79 ? C15 KNT 2001 A 1 HETATM 11 C C17 KNT . . . B 2 41.901 31.92 51.935 1 55.37 ? C17 KNT 2001 A 1 HETATM 12 C C20 KNT . . . B 2 40.469 33.228 49.123 1 57.98 ? C20 KNT 2001 A 1 HETATM 13 C C21 KNT . . . B 2 39.521 34.059 48.544 1 58.45 ? C21 KNT 2001 A 1 HETATM 14 C C22 KNT . . . B 2 39.347 35.347 49.01 1 58.8 ? C22 KNT 2001 A 1 HETATM 15 C C24 KNT . . . B 2 41.066 34.975 50.643 1 58.74 ? C24 KNT 2001 A 1 HETATM 16 C C26 KNT . . . B 2 39.407 30.541 57.904 1 47.39 ? C26 KNT 2001 A 1 HETATM 17 O O1 KNT . . . B 2 39.394 22.463 63.271 1 48.72 ? O1 KNT 2001 A 1 HETATM 18 C C9 KNT . . . B 2 42.056 23.329 59.307 1 50.08 ? C9 KNT 2001 A 1 HETATM 19 N N4 KNT . . . B 2 42.824 22.23 59.292 1 50.31 ? N4 KNT 2001 A 1 HETATM 20 N N2 KNT . . . B 2 43.174 23.381 57.493 1 50.64 ? N2 KNT 2001 A 1 HETATM 21 O O2 KNT . . . B 2 40.458 24.86 60.199 1 47.93 ? O2 KNT 2001 A 1 HETATM 22 C C3 KNT . . . B 2 37.493 26.249 62.771 1 47.46 ? C3 KNT 2001 A 1 HETATM 23 C C2 KNT . . . B 2 37.892 27.024 61.696 1 47.53 ? C2 KNT 2001 A 1 HETATM 24 C C1 KNT . . . B 2 38.898 26.568 60.841 1 47.65 ? C1 KNT 2001 A 1 HETATM 25 N N KNT . . . B 2 39.355 27.333 59.731 1 47.92 ? N KNT 2001 A 1 HETATM 26 C C KNT . . . B 2 39.125 28.653 59.489 1 47.32 ? C KNT 2001 A 1 HETATM 27 O O KNT . . . B 2 38.51 29.379 60.265 1 47.2 ? O KNT 2001 A 1 HETATM 28 C C11 KNT . . . B 2 39.662 29.201 58.202 1 47.03 ? C11 KNT 2001 A 1 HETATM 29 C C25 KNT . . . B 2 39.878 31.111 56.733 1 48.01 ? C25 KNT 2001 A 1 HETATM 30 C C14 KNT . . . B 2 40.616 30.343 55.838 1 48.97 ? C14 KNT 2001 A 1 HETATM 31 C C12 KNT . . . B 2 40.401 28.443 57.293 1 47.51 ? C12 KNT 2001 A 1 HETATM 32 O O3 KNT . . . B 2 41.145 30.791 54.65 1 50.61 ? O3 KNT 2001 A 1 HETATM 33 C C16 KNT . . . B 2 41.995 32.594 53.295 1 54.23 ? C16 KNT 2001 A 1 HETATM 34 C C18 KNT . . . B 2 42.339 32.799 50.763 1 56.65 ? C18 KNT 2001 A 1 HETATM 35 C C19 KNT . . . B 2 41.26 33.68 50.175 1 57.83 ? C19 KNT 2001 A 1 HETATM 36 C C23 KNT . . . B 2 40.117 35.803 50.062 1 58.98 ? C23 KNT 2001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #