data_6RZ4 # _model_server_result.job_id QV6wIfjSFeLADHj8Ds9S5Q _model_server_result.datetime_utc '2024-11-22 22:50:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 6RZ4 # _exptl.entry_id 6RZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.47 _cell.angle_gamma 90 _cell.entry_id 6RZ4 _cell.length_a 58.63 _cell.length_b 45.35 _cell.length_c 86.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 14 1_555 A SG CYS 379 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 99 A CYS 96 1_555 A SG CYS 176 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 72 A ASP 69 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc2 A OG SER 113 A SER 110 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 A O ASN 399 A ASN 287 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc4 A OD1 ASN 399 A ASN 287 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc5 A OD2 ASP 403 A ASP 291 1_555 C NA NA . A NA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 353 n n C10 C9 OLC doub 354 n n C10 C11 OLC sing 355 n n C9 C8 OLC sing 356 n n C17 C16 OLC sing 357 z n C11 C12 OLC sing 358 n n C8 C7 OLC sing 359 n n C24 C22 OLC sing 360 n n C24 O25 OLC sing 361 n n C16 C15 OLC sing 362 n n C12 C13 OLC sing 363 n n C7 C6 OLC sing 364 n n C15 C14 OLC sing 365 n n C13 C14 OLC sing 366 n n C6 C5 OLC sing 367 n n C5 C4 OLC sing 368 n n C4 C3 OLC sing 369 n n C3 C2 OLC sing 370 n n C2 C1 OLC sing 371 n n C21 C22 OLC sing 372 n n C21 O20 OLC sing 373 n n C1 O19 OLC doub 374 n n C1 O20 OLC sing 375 n n C22 O23 OLC sing 376 n n C18 H18 OLC sing 377 n n C18 H18A OLC sing 378 n n C18 H18B OLC sing 379 n n C10 H10 OLC sing 380 n n C9 H9 OLC sing 381 n n C17 H17 OLC sing 382 n n C17 H17A OLC sing 383 n n C11 H11 OLC sing 384 n n C11 H11A OLC sing 385 n n C8 H8 OLC sing 386 n n C8 H8A OLC sing 387 n n C24 H24 OLC sing 388 n n C24 H24A OLC sing 389 n n C16 H16 OLC sing 390 n n C16 H16A OLC sing 391 n n C12 H12 OLC sing 392 n n C12 H12A OLC sing 393 n n C7 H7 OLC sing 394 n n C7 H7A OLC sing 395 n n C15 H15 OLC sing 396 n n C15 H15A OLC sing 397 n n C13 H13 OLC sing 398 n n C13 H13A OLC sing 399 n n C6 H6 OLC sing 400 n n C6 H6A OLC sing 401 n n C14 H14 OLC sing 402 n n C14 H14A OLC sing 403 n n C5 H5 OLC sing 404 n n C5 H5A OLC sing 405 n n C4 H4 OLC sing 406 n n C4 H4A OLC sing 407 n n C3 H3 OLC sing 408 n n C3 H3A OLC sing 409 n n C2 H2 OLC sing 410 n n C2 H2A OLC sing 411 n n C21 H21 OLC sing 412 n n C21 H21A OLC sing 413 n n C22 H22 OLC sing 414 n n O25 HO25 OLC sing 415 n n O23 HO23 OLC sing 416 n n # _atom_sites.entry_id 6RZ4 _atom_sites.fract_transf_matrix[1][1] 0.017056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000438 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNT A 1 2001 2001 KNT LIG . C 3 NA A 1 2002 2002 NA NA . D 4 OLC A 1 2003 1 OLC OLC . E 4 OLC A 1 2004 2 OLC OLC . F 4 OLC A 1 2005 3 OLC OLC . G 4 OLC A 1 2006 4 OLC OLC . H 4 OLC A 1 2007 5 OLC OLC . I 4 OLC A 1 2008 6 OLC OLC . J 4 OLC A 1 2009 7 OLC OLC . K 4 OLC A 1 2010 9 OLC OLC . L 4 OLC A 1 2011 10 OLC OLC . M 5 OLA A 1 2012 101 OLA OLA . N 6 HOH A 1 2101 2104 HOH HOH . N 6 HOH A 2 2102 2117 HOH HOH . N 6 HOH A 3 2103 2109 HOH HOH . N 6 HOH A 4 2104 2110 HOH HOH . N 6 HOH A 5 2105 2114 HOH HOH . N 6 HOH A 6 2106 2106 HOH HOH . N 6 HOH A 7 2107 2102 HOH HOH . N 6 HOH A 8 2108 2116 HOH HOH . N 6 HOH A 9 2109 2107 HOH HOH . N 6 HOH A 10 2110 2112 HOH HOH . N 6 HOH A 11 2111 2101 HOH HOH . N 6 HOH A 12 2112 2108 HOH HOH . N 6 HOH A 13 2113 2111 HOH HOH . N 6 HOH A 14 2114 2115 HOH HOH . N 6 HOH A 15 2115 2105 HOH HOH . N 6 HOH A 16 2116 2103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . D 4 25.383 19.764 63.439 1 78.34 ? C24 OLC 2003 A 1 HETATM 2 C C6 OLC . . . D 4 26.659 20.08 53.576 1 74.51 ? C6 OLC 2003 A 1 HETATM 3 C C5 OLC . . . D 4 26.102 19.982 54.993 1 74.42 ? C5 OLC 2003 A 1 HETATM 4 C C4 OLC . . . D 4 27.257 19.931 55.99 1 74.53 ? C4 OLC 2003 A 1 HETATM 5 C C3 OLC . . . D 4 26.722 20.191 57.397 1 75.04 ? C3 OLC 2003 A 1 HETATM 6 C C2 OLC . . . D 4 27.88 20.608 58.304 1 75.76 ? C2 OLC 2003 A 1 HETATM 7 C C21 OLC . . . D 4 26.277 20.972 61.441 1 77.55 ? C21 OLC 2003 A 1 HETATM 8 C C1 OLC . . . D 4 27.685 20.092 59.732 1 76.48 ? C1 OLC 2003 A 1 HETATM 9 C C22 OLC . . . D 4 26.457 20.735 62.945 1 77.93 ? C22 OLC 2003 A 1 HETATM 10 O O19 OLC . . . D 4 27.702 18.923 59.951 1 76.62 ? O19 OLC 2003 A 1 HETATM 11 O O25 OLC . . . D 4 25.032 20.072 64.76 1 78.45 ? O25 OLC 2003 A 1 HETATM 12 O O23 OLC . . . D 4 27.727 20.213 63.231 1 77.71 ? O23 OLC 2003 A 1 HETATM 13 O O20 OLC . . . D 4 27.538 20.991 60.763 1 77.1 ? O20 OLC 2003 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #