data_6RZ5 # _model_server_result.job_id wkdz1EJWk3VsGzzA5VX7-g _model_server_result.datetime_utc '2024-11-02 03:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2003}' # _entry.id 6RZ5 # _exptl.entry_id 6RZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.31 _cell.angle_beta 76.68 _cell.angle_gamma 81.21 _cell.entry_id 6RZ5 _cell.length_a 41.59 _cell.length_b 68.58 _cell.length_c 87.39 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,SA 1 1 B,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,TA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 14 1_555 A SG CYS 379 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 99 A CYS 96 1_555 A SG CYS 176 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 17 B CYS 14 1_555 B SG CYS 379 B CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 99 B CYS 96 1_555 B SG CYS 176 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 72 A ASP 69 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A OG SER 113 A SER 110 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A OD1 ASN 399 A ASN 287 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A OD2 ASP 403 A ASP 291 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 X NA NA . A NA 2022 1_555 SA O HOH . A HOH 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 B OD1 ASP 72 B ASP 69 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B OG SER 113 B SER 110 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 B OD1 ASN 399 B ASN 287 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc9 B OD2 ASP 403 B ASP 291 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc10 RA NA NA . B NA 2020 1_555 TA O HOH . B HOH 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 327 n n C10 C9 OLC doub 328 n n C10 C11 OLC sing 329 n n C9 C8 OLC sing 330 n n C17 C16 OLC sing 331 z n C11 C12 OLC sing 332 n n C8 C7 OLC sing 333 n n C24 C22 OLC sing 334 n n C24 O25 OLC sing 335 n n C16 C15 OLC sing 336 n n C12 C13 OLC sing 337 n n C7 C6 OLC sing 338 n n C15 C14 OLC sing 339 n n C13 C14 OLC sing 340 n n C6 C5 OLC sing 341 n n C5 C4 OLC sing 342 n n C4 C3 OLC sing 343 n n C3 C2 OLC sing 344 n n C2 C1 OLC sing 345 n n C21 C22 OLC sing 346 n n C21 O20 OLC sing 347 n n C1 O19 OLC doub 348 n n C1 O20 OLC sing 349 n n C22 O23 OLC sing 350 n n C18 H18 OLC sing 351 n n C18 H18A OLC sing 352 n n C18 H18B OLC sing 353 n n C10 H10 OLC sing 354 n n C9 H9 OLC sing 355 n n C17 H17 OLC sing 356 n n C17 H17A OLC sing 357 n n C11 H11 OLC sing 358 n n C11 H11A OLC sing 359 n n C8 H8 OLC sing 360 n n C8 H8A OLC sing 361 n n C24 H24 OLC sing 362 n n C24 H24A OLC sing 363 n n C16 H16 OLC sing 364 n n C16 H16A OLC sing 365 n n C12 H12 OLC sing 366 n n C12 H12A OLC sing 367 n n C7 H7 OLC sing 368 n n C7 H7A OLC sing 369 n n C15 H15 OLC sing 370 n n C15 H15A OLC sing 371 n n C13 H13 OLC sing 372 n n C13 H13A OLC sing 373 n n C6 H6 OLC sing 374 n n C6 H6A OLC sing 375 n n C14 H14 OLC sing 376 n n C14 H14A OLC sing 377 n n C5 H5 OLC sing 378 n n C5 H5A OLC sing 379 n n C4 H4 OLC sing 380 n n C4 H4A OLC sing 381 n n C3 H3 OLC sing 382 n n C3 H3A OLC sing 383 n n C2 H2 OLC sing 384 n n C2 H2A OLC sing 385 n n C21 H21 OLC sing 386 n n C21 H21A OLC sing 387 n n C22 H22 OLC sing 388 n n O25 HO25 OLC sing 389 n n O23 HO23 OLC sing 390 n n # _atom_sites.entry_id 6RZ5 _atom_sites.fract_transf_matrix[1][1] 0.024044 _atom_sites.fract_transf_matrix[1][2] -0.003718 _atom_sites.fract_transf_matrix[1][3] -0.005025 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014755 _atom_sites.fract_transf_matrix[2][3] -0.003161 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZLK A 1 2001 2001 ZLK ZAF . D 3 OLC A 1 2002 1 OLC OLC . E 3 OLC A 1 2003 3 OLC OLC . F 3 OLC A 1 2004 5 OLC OLC . G 3 OLC A 1 2005 10 OLC OLC . H 3 OLC A 1 2006 11 OLC OLC . I 3 OLC A 1 2007 12 OLC OLC . J 3 OLC A 1 2008 14 OLC OLC . K 3 OLC A 1 2009 17 OLC OLC . L 4 OLA A 1 2010 102 OLA OLA . M 4 OLA A 1 2011 103 OLA OLA . N 4 OLA A 1 2012 104 OLA OLA . O 4 OLA A 1 2013 105 OLA OLA . P 4 OLA A 1 2014 108 OLA OLA . Q 4 OLA A 1 2015 109 OLA OLA . R 4 OLA A 1 2016 110 OLA OLA . S 4 OLA A 1 2017 115 OLA OLA . T 4 OLA A 1 2018 116 OLA OLA . U 4 OLA A 1 2019 118 OLA OLA . V 4 OLA A 1 2020 119 OLA OLA . W 5 1PE A 1 2021 201 1PE 1PE . X 6 NA A 1 2022 2001 NA NA . Y 2 ZLK B 1 2001 2001 ZLK ZAF . Z 3 OLC B 1 2002 2 OLC OLC . AA 3 OLC B 1 2003 4 OLC OLC . BA 3 OLC B 1 2004 6 OLC OLC . CA 3 OLC B 1 2005 7 OLC OLC . DA 3 OLC B 1 2006 8 OLC OLC . EA 3 OLC B 1 2007 9 OLC OLC . FA 3 OLC B 1 2008 13 OLC OLC . GA 3 OLC B 1 2009 15 OLC OLC . HA 3 OLC B 1 2010 16 OLC OLC . IA 4 OLA B 1 2011 101 OLA OLA . JA 4 OLA B 1 2012 106 OLA OLA . KA 4 OLA B 1 2013 107 OLA OLA . LA 4 OLA B 1 2014 111 OLA OLA . MA 4 OLA B 1 2015 112 OLA OLA . NA 4 OLA B 1 2016 113 OLA OLA . OA 4 OLA B 1 2017 114 OLA OLA . PA 4 OLA B 1 2018 117 OLA OLA . QA 2 ZLK B 1 2019 301 ZLK ZAF . RA 6 NA B 1 2020 2002 NA NA . SA 7 HOH A 1 2101 2103 HOH HOH . SA 7 HOH A 2 2102 2104 HOH HOH . SA 7 HOH A 3 2103 2110 HOH HOH . SA 7 HOH A 4 2104 2102 HOH HOH . SA 7 HOH A 5 2105 2101 HOH HOH . TA 7 HOH B 1 2101 2107 HOH HOH . TA 7 HOH B 2 2102 2108 HOH HOH . TA 7 HOH B 3 2103 2109 HOH HOH . TA 7 HOH B 4 2104 2106 HOH HOH . TA 7 HOH B 5 2105 2105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . E 3 20.33 -0.909 -1.349 1 98.47 ? C10 OLC 2003 A 1 HETATM 2 C C9 OLC . . . E 3 20.022 -2.052 -1.953 1 96.99 ? C9 OLC 2003 A 1 HETATM 3 C C17 OLC . . . E 3 17.581 2.507 5.062 1 98.96 ? C17 OLC 2003 A 1 HETATM 4 C C11 OLC . . . E 3 19.504 0.392 -1.345 1 98.96 ? C11 OLC 2003 A 1 HETATM 5 C C8 OLC . . . E 3 18.765 -2.285 -2.794 1 96.11 ? C8 OLC 2003 A 1 HETATM 6 C C16 OLC . . . E 3 18.857 2.262 4.253 1 99.74 ? C16 OLC 2003 A 1 HETATM 7 C C12 OLC . . . E 3 20.186 1.489 -0.506 1 98.76 ? C12 OLC 2003 A 1 HETATM 8 C C7 OLC . . . E 3 19.167 -2.513 -4.25 1 94.38 ? C7 OLC 2003 A 1 HETATM 9 C C15 OLC . . . E 3 18.552 1.492 2.964 1 100.55 ? C15 OLC 2003 A 1 HETATM 10 C C13 OLC . . . E 3 20.122 1.188 1.001 1 99.45 ? C13 OLC 2003 A 1 HETATM 11 C C6 OLC . . . E 3 17.91 -2.749 -5.081 1 91.99 ? C6 OLC 2003 A 1 HETATM 12 C C14 OLC . . . E 3 19.207 2.168 1.749 1 100.26 ? C14 OLC 2003 A 1 HETATM 13 C C5 OLC . . . E 3 18.088 -2.17 -6.488 1 89.2 ? C5 OLC 2003 A 1 HETATM 14 C C4 OLC . . . E 3 17.932 -3.28 -7.532 1 85.98 ? C4 OLC 2003 A 1 HETATM 15 C C3 OLC . . . E 3 16.562 -3.218 -8.218 1 81.7 ? C3 OLC 2003 A 1 HETATM 16 C C2 OLC . . . E 3 16.107 -4.626 -8.603 1 77.06 ? C2 OLC 2003 A 1 HETATM 17 C C1 OLC . . . E 3 14.982 -4.518 -9.623 1 73.54 ? C1 OLC 2003 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #