data_6RZ5
#
_model_server_result.job_id            PdKa50AD0_D-mSD2njIwEQ 
_model_server_result.datetime_utc      '2024-11-02 03:40:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":2009}' 
#
_entry.id    6RZ5 
#
_exptl.entry_id    6RZ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         76.31 
_cell.angle_beta          76.68 
_cell.angle_gamma         81.21 
_cell.entry_id            6RZ5 
_cell.length_a            41.59 
_cell.length_b            68.58 
_cell.length_c            87.39 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,SA 1 1 
B,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,TA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 14 1_555 A SG CYS 379 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 99 A CYS 96 1_555 A SG CYS 176 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 17 B CYS 14 1_555 B SG CYS 379 B CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 99 B CYS 96 1_555 B SG CYS 176 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OD1 ASP 72 A ASP 69 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 A OG SER 113 A SER 110 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc3 A OD1 ASN 399 A ASN 287 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc4 A OD2 ASP 403 A ASP 291 1_555 X NA NA . A NA 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc5 X NA NA . A NA 2022 1_555 SA O HOH . A HOH 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc6 B OD1 ASP 72 B ASP 69 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc7 B OG SER 113 B SER 110 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc8 B OD1 ASN 399 B ASN 287 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc9 B OD2 ASP 403 B ASP 291 1_555 RA NA NA . B NA 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc10 RA NA NA . B NA 2020 1_555 TA O HOH . B HOH 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 327 n n 
C10 C9 OLC doub 328 n n 
C10 C11 OLC sing 329 n n 
C9 C8 OLC sing 330 n n 
C17 C16 OLC sing 331 z n 
C11 C12 OLC sing 332 n n 
C8 C7 OLC sing 333 n n 
C24 C22 OLC sing 334 n n 
C24 O25 OLC sing 335 n n 
C16 C15 OLC sing 336 n n 
C12 C13 OLC sing 337 n n 
C7 C6 OLC sing 338 n n 
C15 C14 OLC sing 339 n n 
C13 C14 OLC sing 340 n n 
C6 C5 OLC sing 341 n n 
C5 C4 OLC sing 342 n n 
C4 C3 OLC sing 343 n n 
C3 C2 OLC sing 344 n n 
C2 C1 OLC sing 345 n n 
C21 C22 OLC sing 346 n n 
C21 O20 OLC sing 347 n n 
C1 O19 OLC doub 348 n n 
C1 O20 OLC sing 349 n n 
C22 O23 OLC sing 350 n n 
C18 H18 OLC sing 351 n n 
C18 H18A OLC sing 352 n n 
C18 H18B OLC sing 353 n n 
C10 H10 OLC sing 354 n n 
C9 H9 OLC sing 355 n n 
C17 H17 OLC sing 356 n n 
C17 H17A OLC sing 357 n n 
C11 H11 OLC sing 358 n n 
C11 H11A OLC sing 359 n n 
C8 H8 OLC sing 360 n n 
C8 H8A OLC sing 361 n n 
C24 H24 OLC sing 362 n n 
C24 H24A OLC sing 363 n n 
C16 H16 OLC sing 364 n n 
C16 H16A OLC sing 365 n n 
C12 H12 OLC sing 366 n n 
C12 H12A OLC sing 367 n n 
C7 H7 OLC sing 368 n n 
C7 H7A OLC sing 369 n n 
C15 H15 OLC sing 370 n n 
C15 H15A OLC sing 371 n n 
C13 H13 OLC sing 372 n n 
C13 H13A OLC sing 373 n n 
C6 H6 OLC sing 374 n n 
C6 H6A OLC sing 375 n n 
C14 H14 OLC sing 376 n n 
C14 H14A OLC sing 377 n n 
C5 H5 OLC sing 378 n n 
C5 H5A OLC sing 379 n n 
C4 H4 OLC sing 380 n n 
C4 H4A OLC sing 381 n n 
C3 H3 OLC sing 382 n n 
C3 H3A OLC sing 383 n n 
C2 H2 OLC sing 384 n n 
C2 H2A OLC sing 385 n n 
C21 H21 OLC sing 386 n n 
C21 H21A OLC sing 387 n n 
C22 H22 OLC sing 388 n n 
O25 HO25 OLC sing 389 n n 
O23 HO23 OLC sing 390 n n 
#
_atom_sites.entry_id                     6RZ5 
_atom_sites.fract_transf_matrix[1][1]    0.024044 
_atom_sites.fract_transf_matrix[1][2]    -0.003718 
_atom_sites.fract_transf_matrix[1][3]    -0.005025 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014755 
_atom_sites.fract_transf_matrix[2][3]    -0.003161 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012026 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZLK A 1 2001 2001 ZLK ZAF . 
D 3 OLC A 1 2002 1 OLC OLC . 
E 3 OLC A 1 2003 3 OLC OLC . 
F 3 OLC A 1 2004 5 OLC OLC . 
G 3 OLC A 1 2005 10 OLC OLC . 
H 3 OLC A 1 2006 11 OLC OLC . 
I 3 OLC A 1 2007 12 OLC OLC . 
J 3 OLC A 1 2008 14 OLC OLC . 
K 3 OLC A 1 2009 17 OLC OLC . 
L 4 OLA A 1 2010 102 OLA OLA . 
M 4 OLA A 1 2011 103 OLA OLA . 
N 4 OLA A 1 2012 104 OLA OLA . 
O 4 OLA A 1 2013 105 OLA OLA . 
P 4 OLA A 1 2014 108 OLA OLA . 
Q 4 OLA A 1 2015 109 OLA OLA . 
R 4 OLA A 1 2016 110 OLA OLA . 
S 4 OLA A 1 2017 115 OLA OLA . 
T 4 OLA A 1 2018 116 OLA OLA . 
U 4 OLA A 1 2019 118 OLA OLA . 
V 4 OLA A 1 2020 119 OLA OLA . 
W 5 1PE A 1 2021 201 1PE 1PE . 
X 6 NA A 1 2022 2001 NA NA . 
Y 2 ZLK B 1 2001 2001 ZLK ZAF . 
Z 3 OLC B 1 2002 2 OLC OLC . 
AA 3 OLC B 1 2003 4 OLC OLC . 
BA 3 OLC B 1 2004 6 OLC OLC . 
CA 3 OLC B 1 2005 7 OLC OLC . 
DA 3 OLC B 1 2006 8 OLC OLC . 
EA 3 OLC B 1 2007 9 OLC OLC . 
FA 3 OLC B 1 2008 13 OLC OLC . 
GA 3 OLC B 1 2009 15 OLC OLC . 
HA 3 OLC B 1 2010 16 OLC OLC . 
IA 4 OLA B 1 2011 101 OLA OLA . 
JA 4 OLA B 1 2012 106 OLA OLA . 
KA 4 OLA B 1 2013 107 OLA OLA . 
LA 4 OLA B 1 2014 111 OLA OLA . 
MA 4 OLA B 1 2015 112 OLA OLA . 
NA 4 OLA B 1 2016 113 OLA OLA . 
OA 4 OLA B 1 2017 114 OLA OLA . 
PA 4 OLA B 1 2018 117 OLA OLA . 
QA 2 ZLK B 1 2019 301 ZLK ZAF . 
RA 6 NA B 1 2020 2002 NA NA . 
SA 7 HOH A 1 2101 2103 HOH HOH . 
SA 7 HOH A 2 2102 2104 HOH HOH . 
SA 7 HOH A 3 2103 2110 HOH HOH . 
SA 7 HOH A 4 2104 2102 HOH HOH . 
SA 7 HOH A 5 2105 2101 HOH HOH . 
TA 7 HOH B 1 2101 2107 HOH HOH . 
TA 7 HOH B 2 2102 2108 HOH HOH . 
TA 7 HOH B 3 2103 2109 HOH HOH . 
TA 7 HOH B 4 2104 2106 HOH HOH . 
TA 7 HOH B 5 2105 2105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 OLC . . . K 3 -1.184 -0.204 3.923 1 70.21 ? C8 OLC 2009 A 1 
HETATM 2 C C7 OLC . . . K 3 -1.442 0.797 5.047 1 70.47 ? C7 OLC 2009 A 1 
HETATM 3 C C6 OLC . . . K 3 -1.194 0.111 6.387 1 71.23 ? C6 OLC 2009 A 1 
HETATM 4 C C5 OLC . . . K 3 -2.239 0.546 7.406 1 73.02 ? C5 OLC 2009 A 1 
HETATM 5 C C4 OLC . . . K 3 -1.707 1.733 8.206 1 75.62 ? C4 OLC 2009 A 1 
HETATM 6 C C3 OLC . . . K 3 -2.376 1.767 9.578 1 78.72 ? C3 OLC 2009 A 1 
HETATM 7 C C2 OLC . . . K 3 -1.38 1.336 10.657 1 80.19 ? C2 OLC 2009 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#