data_6RZ7 # _model_server_result.job_id '_saMXV3laqIzZUXdgd2-_A' _model_server_result.datetime_utc '2024-10-15 11:22:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 6RZ7 # _exptl.entry_id 6RZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ7 _cell.length_a 81.83 _cell.length_b 142.07 _cell.length_c 171.16 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 441 n n C10 C9 OLC doub 442 n n C10 C11 OLC sing 443 n n C9 C8 OLC sing 444 n n C17 C16 OLC sing 445 z n C11 C12 OLC sing 446 n n C8 C7 OLC sing 447 n n C24 C22 OLC sing 448 n n C24 O25 OLC sing 449 n n C16 C15 OLC sing 450 n n C12 C13 OLC sing 451 n n C7 C6 OLC sing 452 n n C15 C14 OLC sing 453 n n C13 C14 OLC sing 454 n n C6 C5 OLC sing 455 n n C5 C4 OLC sing 456 n n C4 C3 OLC sing 457 n n C3 C2 OLC sing 458 n n C2 C1 OLC sing 459 n n C21 C22 OLC sing 460 n n C21 O20 OLC sing 461 n n C1 O19 OLC doub 462 n n C1 O20 OLC sing 463 n n C22 O23 OLC sing 464 n n C18 H18 OLC sing 465 n n C18 H18A OLC sing 466 n n C18 H18B OLC sing 467 n n C10 H10 OLC sing 468 n n C9 H9 OLC sing 469 n n C17 H17 OLC sing 470 n n C17 H17A OLC sing 471 n n C11 H11 OLC sing 472 n n C11 H11A OLC sing 473 n n C8 H8 OLC sing 474 n n C8 H8A OLC sing 475 n n C24 H24 OLC sing 476 n n C24 H24A OLC sing 477 n n C16 H16 OLC sing 478 n n C16 H16A OLC sing 479 n n C12 H12 OLC sing 480 n n C12 H12A OLC sing 481 n n C7 H7 OLC sing 482 n n C7 H7A OLC sing 483 n n C15 H15 OLC sing 484 n n C15 H15A OLC sing 485 n n C13 H13 OLC sing 486 n n C13 H13A OLC sing 487 n n C6 H6 OLC sing 488 n n C6 H6A OLC sing 489 n n C14 H14 OLC sing 490 n n C14 H14A OLC sing 491 n n C5 H5 OLC sing 492 n n C5 H5A OLC sing 493 n n C4 H4 OLC sing 494 n n C4 H4A OLC sing 495 n n C3 H3 OLC sing 496 n n C3 H3A OLC sing 497 n n C2 H2 OLC sing 498 n n C2 H2A OLC sing 499 n n C21 H21 OLC sing 500 n n C21 H21A OLC sing 501 n n C22 H22 OLC sing 502 n n O25 HO25 OLC sing 503 n n O23 HO23 OLC sing 504 n n # _atom_sites.entry_id 6RZ7 _atom_sites.fract_transf_matrix[1][1] 0.01222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNW A 1 2001 2001 KNW DRG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLC A 1 2003 1 OLC OLC . E 4 OLC A 1 2004 2 OLC OLC . F 5 OLA A 1 2005 101 OLA OLA . G 5 OLA A 1 2006 102 OLA OLA . H 5 OLA A 1 2007 103 OLA OLA . I 5 OLA A 1 2008 104 OLA OLA . J 5 OLA A 1 2009 105 OLA OLA . K 5 OLA A 1 2010 106 OLA OLA . L 5 OLA A 1 2011 107 OLA OLA . M 5 OLA A 1 2012 108 OLA OLA . N 5 OLA A 1 2013 109 OLA OLA . O 5 OLA A 1 2014 110 OLA OLA . P 5 OLA A 1 2015 111 OLA OLA . Q 5 OLA A 1 2016 112 OLA OLA . R 5 OLA A 1 2017 113 OLA OLA . S 5 OLA A 1 2018 114 OLA OLA . T 5 OLA A 1 2019 115 OLA OLA . U 5 OLA A 1 2020 116 OLA OLA . V 5 OLA A 1 2021 117 OLA OLA . W 5 OLA A 1 2022 118 OLA OLA . X 5 OLA A 1 2023 120 OLA OLA . Y 5 OLA A 1 2024 121 OLA OLA . Z 5 OLA A 1 2025 122 OLA OLA . AA 6 PGE A 1 2026 201 PGE PGE . BA 7 HOH A 1 2101 2103 HOH HOH . BA 7 HOH A 2 2102 2108 HOH HOH . BA 7 HOH A 3 2103 2110 HOH HOH . BA 7 HOH A 4 2104 2104 HOH HOH . BA 7 HOH A 5 2105 2111 HOH HOH . BA 7 HOH A 6 2106 2109 HOH HOH . BA 7 HOH A 7 2107 2107 HOH HOH . BA 7 HOH A 8 2108 2102 HOH HOH . BA 7 HOH A 9 2109 2119 HOH HOH . BA 7 HOH A 10 2110 2116 HOH HOH . BA 7 HOH A 11 2111 2121 HOH HOH . BA 7 HOH A 12 2112 2114 HOH HOH . BA 7 HOH A 13 2113 2105 HOH HOH . BA 7 HOH A 14 2114 2112 HOH HOH . BA 7 HOH A 15 2115 2115 HOH HOH . BA 7 HOH A 16 2116 2118 HOH HOH . BA 7 HOH A 17 2117 2120 HOH HOH . BA 7 HOH A 18 2118 2101 HOH HOH . BA 7 HOH A 19 2119 2117 HOH HOH . BA 7 HOH A 20 2120 2106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . D 4 -19.997 -33.764 -2.239 1 65.64 ? C18 OLC 2003 A 1 HETATM 2 C C10 OLC . . . D 4 -21.34 -34.212 6.486 1 62.29 ? C10 OLC 2003 A 1 HETATM 3 C C17 OLC . . . D 4 -19.868 -32.625 -1.221 1 65.33 ? C17 OLC 2003 A 1 HETATM 4 C C11 OLC . . . D 4 -21.455 -32.889 5.728 1 61.32 ? C11 OLC 2003 A 1 HETATM 5 C C16 OLC . . . D 4 -21.166 -32.425 -0.432 1 63.49 ? C16 OLC 2003 A 1 HETATM 6 C C12 OLC . . . D 4 -20.667 -33.044 4.433 1 60.95 ? C12 OLC 2003 A 1 HETATM 7 C C15 OLC . . . D 4 -20.893 -31.715 0.894 1 62.64 ? C15 OLC 2003 A 1 HETATM 8 C C13 OLC . . . D 4 -21.107 -32.028 3.385 1 60.66 ? C13 OLC 2003 A 1 HETATM 9 C C14 OLC . . . D 4 -21.001 -32.72 2.034 1 61.19 ? C14 OLC 2003 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #