data_6RZ7 # _model_server_result.job_id USNExPMSxYVSuIOvlNe0Cw _model_server_result.datetime_utc '2024-12-23 06:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 6RZ7 # _exptl.entry_id 6RZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ7 _cell.length_a 81.83 _cell.length_b 142.07 _cell.length_c 171.16 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 441 n n C10 C9 OLC doub 442 n n C10 C11 OLC sing 443 n n C9 C8 OLC sing 444 n n C17 C16 OLC sing 445 z n C11 C12 OLC sing 446 n n C8 C7 OLC sing 447 n n C24 C22 OLC sing 448 n n C24 O25 OLC sing 449 n n C16 C15 OLC sing 450 n n C12 C13 OLC sing 451 n n C7 C6 OLC sing 452 n n C15 C14 OLC sing 453 n n C13 C14 OLC sing 454 n n C6 C5 OLC sing 455 n n C5 C4 OLC sing 456 n n C4 C3 OLC sing 457 n n C3 C2 OLC sing 458 n n C2 C1 OLC sing 459 n n C21 C22 OLC sing 460 n n C21 O20 OLC sing 461 n n C1 O19 OLC doub 462 n n C1 O20 OLC sing 463 n n C22 O23 OLC sing 464 n n C18 H18 OLC sing 465 n n C18 H18A OLC sing 466 n n C18 H18B OLC sing 467 n n C10 H10 OLC sing 468 n n C9 H9 OLC sing 469 n n C17 H17 OLC sing 470 n n C17 H17A OLC sing 471 n n C11 H11 OLC sing 472 n n C11 H11A OLC sing 473 n n C8 H8 OLC sing 474 n n C8 H8A OLC sing 475 n n C24 H24 OLC sing 476 n n C24 H24A OLC sing 477 n n C16 H16 OLC sing 478 n n C16 H16A OLC sing 479 n n C12 H12 OLC sing 480 n n C12 H12A OLC sing 481 n n C7 H7 OLC sing 482 n n C7 H7A OLC sing 483 n n C15 H15 OLC sing 484 n n C15 H15A OLC sing 485 n n C13 H13 OLC sing 486 n n C13 H13A OLC sing 487 n n C6 H6 OLC sing 488 n n C6 H6A OLC sing 489 n n C14 H14 OLC sing 490 n n C14 H14A OLC sing 491 n n C5 H5 OLC sing 492 n n C5 H5A OLC sing 493 n n C4 H4 OLC sing 494 n n C4 H4A OLC sing 495 n n C3 H3 OLC sing 496 n n C3 H3A OLC sing 497 n n C2 H2 OLC sing 498 n n C2 H2A OLC sing 499 n n C21 H21 OLC sing 500 n n C21 H21A OLC sing 501 n n C22 H22 OLC sing 502 n n O25 HO25 OLC sing 503 n n O23 HO23 OLC sing 504 n n # _atom_sites.entry_id 6RZ7 _atom_sites.fract_transf_matrix[1][1] 0.01222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNW A 1 2001 2001 KNW DRG . C 3 CLR A 1 2002 2002 CLR CLR . D 4 OLC A 1 2003 1 OLC OLC . E 4 OLC A 1 2004 2 OLC OLC . F 5 OLA A 1 2005 101 OLA OLA . G 5 OLA A 1 2006 102 OLA OLA . H 5 OLA A 1 2007 103 OLA OLA . I 5 OLA A 1 2008 104 OLA OLA . J 5 OLA A 1 2009 105 OLA OLA . K 5 OLA A 1 2010 106 OLA OLA . L 5 OLA A 1 2011 107 OLA OLA . M 5 OLA A 1 2012 108 OLA OLA . N 5 OLA A 1 2013 109 OLA OLA . O 5 OLA A 1 2014 110 OLA OLA . P 5 OLA A 1 2015 111 OLA OLA . Q 5 OLA A 1 2016 112 OLA OLA . R 5 OLA A 1 2017 113 OLA OLA . S 5 OLA A 1 2018 114 OLA OLA . T 5 OLA A 1 2019 115 OLA OLA . U 5 OLA A 1 2020 116 OLA OLA . V 5 OLA A 1 2021 117 OLA OLA . W 5 OLA A 1 2022 118 OLA OLA . X 5 OLA A 1 2023 120 OLA OLA . Y 5 OLA A 1 2024 121 OLA OLA . Z 5 OLA A 1 2025 122 OLA OLA . AA 6 PGE A 1 2026 201 PGE PGE . BA 7 HOH A 1 2101 2103 HOH HOH . BA 7 HOH A 2 2102 2108 HOH HOH . BA 7 HOH A 3 2103 2110 HOH HOH . BA 7 HOH A 4 2104 2104 HOH HOH . BA 7 HOH A 5 2105 2111 HOH HOH . BA 7 HOH A 6 2106 2109 HOH HOH . BA 7 HOH A 7 2107 2107 HOH HOH . BA 7 HOH A 8 2108 2102 HOH HOH . BA 7 HOH A 9 2109 2119 HOH HOH . BA 7 HOH A 10 2110 2116 HOH HOH . BA 7 HOH A 11 2111 2121 HOH HOH . BA 7 HOH A 12 2112 2114 HOH HOH . BA 7 HOH A 13 2113 2105 HOH HOH . BA 7 HOH A 14 2114 2112 HOH HOH . BA 7 HOH A 15 2115 2115 HOH HOH . BA 7 HOH A 16 2116 2118 HOH HOH . BA 7 HOH A 17 2117 2120 HOH HOH . BA 7 HOH A 18 2118 2101 HOH HOH . BA 7 HOH A 19 2119 2117 HOH HOH . BA 7 HOH A 20 2120 2106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 4 -3.345 -13.307 -2.538 1 81.53 ? C18 OLC 2004 A 1 HETATM 2 C C10 OLC . . . E 4 -6.816 -14.995 5.691 1 81.82 ? C10 OLC 2004 A 1 HETATM 3 C C9 OLC . . . E 4 -6.868 -15.234 6.983 1 82.62 ? C9 OLC 2004 A 1 HETATM 4 C C17 OLC . . . E 4 -4.145 -14.392 -1.821 1 81.23 ? C17 OLC 2004 A 1 HETATM 5 C C11 OLC . . . E 4 -6.505 -16.116 4.701 1 81.46 ? C11 OLC 2004 A 1 HETATM 6 C C8 OLC . . . E 4 -6.607 -16.637 7.512 1 84 ? C8 OLC 2004 A 1 HETATM 7 C C24 OLC . . . E 4 -10.181 -20.854 17.444 1 111.51 ? C24 OLC 2004 A 1 HETATM 8 C C16 OLC . . . E 4 -5.111 -13.751 -0.826 1 80.74 ? C16 OLC 2004 A 1 HETATM 9 C C12 OLC . . . E 4 -6.853 -15.63 3.295 1 81.03 ? C12 OLC 2004 A 1 HETATM 10 C C7 OLC . . . E 4 -7.037 -16.689 8.972 1 86.06 ? C7 OLC 2004 A 1 HETATM 11 C C15 OLC . . . E 4 -5.549 -14.779 0.213 1 80.25 ? C15 OLC 2004 A 1 HETATM 12 C C13 OLC . . . E 4 -5.651 -14.876 2.724 1 80.7 ? C13 OLC 2004 A 1 HETATM 13 C C6 OLC . . . E 4 -6.421 -17.912 9.642 1 88.28 ? C6 OLC 2004 A 1 HETATM 14 C C14 OLC . . . E 4 -6.007 -14.061 1.479 1 80.34 ? C14 OLC 2004 A 1 HETATM 15 C C5 OLC . . . E 4 -7.487 -18.581 10.498 1 90.64 ? C5 OLC 2004 A 1 HETATM 16 C C4 OLC . . . E 4 -6.855 -19.636 11.4 1 93.09 ? C4 OLC 2004 A 1 HETATM 17 C C3 OLC . . . E 4 -7.994 -20.38 12.086 1 96.36 ? C3 OLC 2004 A 1 HETATM 18 C C2 OLC . . . E 4 -7.475 -21.363 13.131 1 99.64 ? C2 OLC 2004 A 1 HETATM 19 C C21 OLC . . . E 4 -9.473 -19.938 15.255 1 108.69 ? C21 OLC 2004 A 1 HETATM 20 C C1 OLC . . . E 4 -7.397 -20.65 14.472 1 102.42 ? C1 OLC 2004 A 1 HETATM 21 C C22 OLC . . . E 4 -10.054 -19.577 16.615 1 110.34 ? C22 OLC 2004 A 1 HETATM 22 O O19 OLC . . . E 4 -6.492 -19.923 14.68 1 102.15 ? O19 OLC 2004 A 1 HETATM 23 O O25 OLC . . . E 4 -10.963 -21.787 16.753 1 112.68 ? O25 OLC 2004 A 1 HETATM 24 O O23 OLC . . . E 4 -9.203 -18.667 17.254 1 111 ? O23 OLC 2004 A 1 HETATM 25 O O20 OLC . . . E 4 -8.374 -20.834 15.412 1 105.79 ? O20 OLC 2004 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #