data_6RZ8 # _model_server_result.job_id AZfamh03kRLC1R5UUPVPrw _model_server_result.datetime_utc '2025-03-01 08:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 6RZ8 # _exptl.entry_id 6RZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 602.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-8-[[4-[4-[2,3-bis(fluoranyl)phenoxy]butoxy]-2-fluoranyl-phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-but yl)-2,3-dihydro-1,4-benzoxazine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ8 _cell.length_a 78.44 _cell.length_b 78.44 _cell.length_c 172.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C30 H29 F3 N2 O8' _chem_comp.formula_weight 602.555 _chem_comp.id KNZ _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-8-[[4-[4-[2,3-bis(fluoranyl)phenoxy]butoxy]-2-fluoranyl-phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-but yl)-2,3-dihydro-1,4-benzoxazine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ONO-2080365 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C7 KNZ doub 173 n n C7 O4 KNZ sing 174 n n C7 C6 KNZ sing 175 n n C4 N1 KNZ sing 176 n n C4 C5 KNZ sing 177 n n C6 C5 KNZ sing 178 n n N1 C3 KNZ sing 179 n n N1 C8 KNZ sing 180 n n C9 C8 KNZ doub 181 n y C9 C10 KNZ sing 182 n y C3 C1 KNZ sing 183 n n C8 C30 KNZ sing 184 n y O1 C2 KNZ doub 185 n n C10 C11 KNZ doub 186 n y C1 C2 KNZ sing 187 n n C1 O7 KNZ sing 188 n n C2 O2 KNZ sing 189 n n C30 O7 KNZ sing 190 n n C30 C12 KNZ doub 191 n y C11 C12 KNZ sing 192 n y C12 N2 KNZ sing 193 n n N2 C13 KNZ sing 194 n n O5 C13 KNZ doub 195 n n C13 C14 KNZ sing 196 n n F3 C15 KNZ sing 197 n n C14 C15 KNZ doub 198 n y C14 C29 KNZ sing 199 n y C15 C16 KNZ sing 200 n y C29 C28 KNZ doub 201 n y C16 C17 KNZ doub 202 n y C28 C17 KNZ sing 203 n y C17 O6 KNZ sing 204 n n O6 C18 KNZ sing 205 n n C18 C19 KNZ sing 206 n n C20 C19 KNZ sing 207 n n C20 C21 KNZ sing 208 n n C21 O8 KNZ sing 209 n n O8 C22 KNZ sing 210 n n F2 C27 KNZ sing 211 n n C22 C27 KNZ doub 212 n y C22 C23 KNZ sing 213 n y C27 C26 KNZ sing 214 n y C23 C24 KNZ doub 215 n y C26 F1 KNZ sing 216 n n C26 C25 KNZ doub 217 n y C24 C25 KNZ sing 218 n y C4 H1 KNZ sing 219 n n C4 H2 KNZ sing 220 n n C5 H3 KNZ sing 221 n n C5 H4 KNZ sing 222 n n C6 H5 KNZ sing 223 n n C6 H6 KNZ sing 224 n n C11 H7 KNZ sing 225 n n C9 H8 KNZ sing 226 n n C10 H9 KNZ sing 227 n n N2 H10 KNZ sing 228 n n C3 H11 KNZ sing 229 n n C3 H12 KNZ sing 230 n n C1 H13 KNZ sing 231 n n C16 H14 KNZ sing 232 n n C18 H15 KNZ sing 233 n n C18 H16 KNZ sing 234 n n C19 H17 KNZ sing 235 n n C19 H18 KNZ sing 236 n n C20 H19 KNZ sing 237 n n C20 H20 KNZ sing 238 n n C21 H21 KNZ sing 239 n n C21 H22 KNZ sing 240 n n C23 H23 KNZ sing 241 n n C24 H24 KNZ sing 242 n n C25 H25 KNZ sing 243 n n C28 H26 KNZ sing 244 n n C29 H27 KNZ sing 245 n n O2 H28 KNZ sing 246 n n O4 H29 KNZ sing 247 n n # _atom_sites.entry_id 6RZ8 _atom_sites.fract_transf_matrix[1][1] 0.012749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNZ A 1 2001 2001 KNZ DRG . C 3 OLC A 1 2002 1 OLC OLC . D 3 OLC A 1 2003 2 OLC OLC . E 3 OLC A 1 2004 3 OLC OLC . F 3 OLC A 1 2005 4 OLC OLC . G 3 OLC A 1 2006 5 OLC OLC . H 3 OLC A 1 2007 6 OLC OLC . I 3 OLC A 1 2008 7 OLC OLC . J 3 OLC A 1 2009 8 OLC OLC . K 3 OLC A 1 2010 9 OLC OLC . L 3 OLC A 1 2011 10 OLC OLC . M 4 OLA A 1 2012 101 OLA OLA . N 4 OLA A 1 2013 102 OLA OLA . O 4 OLA A 1 2014 103 OLA OLA . P 5 HOH A 1 2101 2107 HOH HOH . P 5 HOH A 2 2102 2113 HOH HOH . P 5 HOH A 3 2103 2101 HOH HOH . P 5 HOH A 4 2104 2110 HOH HOH . P 5 HOH A 5 2105 2105 HOH HOH . P 5 HOH A 6 2106 2104 HOH HOH . P 5 HOH A 7 2107 2114 HOH HOH . P 5 HOH A 8 2108 2111 HOH HOH . P 5 HOH A 9 2109 2102 HOH HOH . P 5 HOH A 10 2110 2116 HOH HOH . P 5 HOH A 11 2111 2108 HOH HOH . P 5 HOH A 12 2112 2112 HOH HOH . P 5 HOH A 13 2113 2103 HOH HOH . P 5 HOH A 14 2114 2117 HOH HOH . P 5 HOH A 15 2115 2106 HOH HOH . P 5 HOH A 16 2116 2109 HOH HOH . P 5 HOH A 17 2117 2115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 KNZ . . . B 2 114.194 62.656 -21.953 1 60.56 ? C4 KNZ 2001 A 1 HETATM 2 C C14 KNZ . . . B 2 115.635 69.351 -16.91 1 41.5 ? C14 KNZ 2001 A 1 HETATM 3 C C5 KNZ . . . B 2 114.49 61.525 -20.978 1 54.26 ? C5 KNZ 2001 A 1 HETATM 4 C C6 KNZ . . . B 2 114.796 60.221 -21.696 1 63.15 ? C6 KNZ 2001 A 1 HETATM 5 C C11 KNZ . . . B 2 116.995 66.347 -19.9 1 59.72 ? C11 KNZ 2001 A 1 HETATM 6 C C7 KNZ . . . B 2 113.677 59.763 -22.613 1 60.44 ? C7 KNZ 2001 A 1 HETATM 7 C C8 KNZ . . . B 2 114.935 64.752 -20.863 1 57.24 ? C8 KNZ 2001 A 1 HETATM 8 C C9 KNZ . . . B 2 116.27 64.474 -21.176 1 41.16 ? C9 KNZ 2001 A 1 HETATM 9 C C10 KNZ . . . B 2 117.282 65.273 -20.704 1 47.88 ? C10 KNZ 2001 A 1 HETATM 10 C C12 KNZ . . . B 2 115.684 66.645 -19.569 1 51.19 ? C12 KNZ 2001 A 1 HETATM 11 C C13 KNZ . . . B 2 116.239 68.509 -18.007 1 52.47 ? C13 KNZ 2001 A 1 HETATM 12 N N1 KNZ . . . B 2 113.91 63.948 -21.303 1 53.69 ? N1 KNZ 2001 A 1 HETATM 13 N N2 KNZ . . . B 2 115.379 67.752 -18.733 1 48.49 ? N2 KNZ 2001 A 1 HETATM 14 C C3 KNZ . . . B 2 112.507 64.298 -21.065 1 56.16 ? C3 KNZ 2001 A 1 HETATM 15 C C1 KNZ . . . B 2 112.365 65.759 -20.641 1 59.15 ? C1 KNZ 2001 A 1 HETATM 16 C C15 KNZ . . . B 2 114.289 69.568 -16.689 1 44.68 ? C15 KNZ 2001 A 1 HETATM 17 C C16 KNZ . . . B 2 113.807 70.348 -15.663 1 37.88 ? C16 KNZ 2001 A 1 HETATM 18 C C17 KNZ . . . B 2 114.731 70.944 -14.808 1 53 ? C17 KNZ 2001 A 1 HETATM 19 C C18 KNZ . . . B 2 112.974 71.82 -13.41 1 43.95 ? C18 KNZ 2001 A 1 HETATM 20 C C19 KNZ . . . B 2 112.898 72.604 -12.127 1 56.68 ? C19 KNZ 2001 A 1 HETATM 21 C C2 KNZ . . . B 2 110.965 66.038 -20.098 1 68.13 ? C2 KNZ 2001 A 1 HETATM 22 C C20 KNZ . . . B 2 113.427 74.024 -12.23 1 57 ? C20 KNZ 2001 A 1 HETATM 23 C C21 KNZ . . . B 2 113.591 74.705 -10.896 1 54.46 ? C21 KNZ 2001 A 1 HETATM 24 C C22 KNZ . . . B 2 114.85 74.302 -8.856 1 79.03 ? C22 KNZ 2001 A 1 HETATM 25 C C23 KNZ . . . B 2 115.109 73.236 -8.009 1 80.94 ? C23 KNZ 2001 A 1 HETATM 26 C C24 KNZ . . . B 2 115.36 73.447 -6.666 1 79.33 ? C24 KNZ 2001 A 1 HETATM 27 C C25 KNZ . . . B 2 115.386 74.718 -6.136 1 76.76 ? C25 KNZ 2001 A 1 HETATM 28 C C26 KNZ . . . B 2 115.151 75.778 -6.973 1 88.94 ? C26 KNZ 2001 A 1 HETATM 29 C C27 KNZ . . . B 2 114.891 75.586 -8.319 1 88.12 ? C27 KNZ 2001 A 1 HETATM 30 C C28 KNZ . . . B 2 116.088 70.755 -14.996 1 42.87 ? C28 KNZ 2001 A 1 HETATM 31 C C29 KNZ . . . B 2 116.529 69.966 -16.038 1 55.19 ? C29 KNZ 2001 A 1 HETATM 32 C C30 KNZ . . . B 2 114.643 65.845 -20.045 1 52.04 ? C30 KNZ 2001 A 1 HETATM 33 F F1 KNZ . . . B 2 115.169 77.043 -6.498 1 106.05 ? F1 KNZ 2001 A 1 HETATM 34 F F2 KNZ . . . B 2 114.671 76.655 -9.105 1 91.56 ? F2 KNZ 2001 A 1 HETATM 35 F F3 KNZ . . . B 2 113.397 68.989 -17.525 1 57.81 ? F3 KNZ 2001 A 1 HETATM 36 O O1 KNZ . . . B 2 110.012 65.92 -20.833 1 71.99 ? O1 KNZ 2001 A 1 HETATM 37 O O2 KNZ . . . B 2 110.818 66.361 -18.945 1 76.82 -1 O2 KNZ 2001 A 1 HETATM 38 O O3 KNZ . . . B 2 113.901 59.72 -23.839 1 50.77 ? O3 KNZ 2001 A 1 HETATM 39 O O4 KNZ . . . B 2 112.584 59.455 -22.096 1 70.84 -1 O4 KNZ 2001 A 1 HETATM 40 O O5 KNZ . . . B 2 117.454 68.505 -18.158 1 59.23 ? O5 KNZ 2001 A 1 HETATM 41 O O6 KNZ . . . B 2 114.36 71.735 -13.755 1 63.22 ? O6 KNZ 2001 A 1 HETATM 42 O O7 KNZ . . . B 2 113.355 66.159 -19.696 1 54.22 ? O7 KNZ 2001 A 1 HETATM 43 O O8 KNZ . . . B 2 114.619 74.01 -10.177 1 60.88 ? O8 KNZ 2001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #