data_6RZ8 # _model_server_result.job_id gejwvTFmFASrN2rQHcYBmA _model_server_result.datetime_utc '2024-11-04 22:38:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2009}' # _entry.id 6RZ8 # _exptl.entry_id 6RZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ8 _cell.length_a 78.44 _cell.length_b 78.44 _cell.length_c 172.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 365 n n C10 C9 OLC doub 366 n n C10 C11 OLC sing 367 n n C9 C8 OLC sing 368 n n C17 C16 OLC sing 369 z n C11 C12 OLC sing 370 n n C8 C7 OLC sing 371 n n C24 C22 OLC sing 372 n n C24 O25 OLC sing 373 n n C16 C15 OLC sing 374 n n C12 C13 OLC sing 375 n n C7 C6 OLC sing 376 n n C15 C14 OLC sing 377 n n C13 C14 OLC sing 378 n n C6 C5 OLC sing 379 n n C5 C4 OLC sing 380 n n C4 C3 OLC sing 381 n n C3 C2 OLC sing 382 n n C2 C1 OLC sing 383 n n C21 C22 OLC sing 384 n n C21 O20 OLC sing 385 n n C1 O19 OLC doub 386 n n C1 O20 OLC sing 387 n n C22 O23 OLC sing 388 n n C18 H18 OLC sing 389 n n C18 H18A OLC sing 390 n n C18 H18B OLC sing 391 n n C10 H10 OLC sing 392 n n C9 H9 OLC sing 393 n n C17 H17 OLC sing 394 n n C17 H17A OLC sing 395 n n C11 H11 OLC sing 396 n n C11 H11A OLC sing 397 n n C8 H8 OLC sing 398 n n C8 H8A OLC sing 399 n n C24 H24 OLC sing 400 n n C24 H24A OLC sing 401 n n C16 H16 OLC sing 402 n n C16 H16A OLC sing 403 n n C12 H12 OLC sing 404 n n C12 H12A OLC sing 405 n n C7 H7 OLC sing 406 n n C7 H7A OLC sing 407 n n C15 H15 OLC sing 408 n n C15 H15A OLC sing 409 n n C13 H13 OLC sing 410 n n C13 H13A OLC sing 411 n n C6 H6 OLC sing 412 n n C6 H6A OLC sing 413 n n C14 H14 OLC sing 414 n n C14 H14A OLC sing 415 n n C5 H5 OLC sing 416 n n C5 H5A OLC sing 417 n n C4 H4 OLC sing 418 n n C4 H4A OLC sing 419 n n C3 H3 OLC sing 420 n n C3 H3A OLC sing 421 n n C2 H2 OLC sing 422 n n C2 H2A OLC sing 423 n n C21 H21 OLC sing 424 n n C21 H21A OLC sing 425 n n C22 H22 OLC sing 426 n n O25 HO25 OLC sing 427 n n O23 HO23 OLC sing 428 n n # _atom_sites.entry_id 6RZ8 _atom_sites.fract_transf_matrix[1][1] 0.012749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNZ A 1 2001 2001 KNZ DRG . C 3 OLC A 1 2002 1 OLC OLC . D 3 OLC A 1 2003 2 OLC OLC . E 3 OLC A 1 2004 3 OLC OLC . F 3 OLC A 1 2005 4 OLC OLC . G 3 OLC A 1 2006 5 OLC OLC . H 3 OLC A 1 2007 6 OLC OLC . I 3 OLC A 1 2008 7 OLC OLC . J 3 OLC A 1 2009 8 OLC OLC . K 3 OLC A 1 2010 9 OLC OLC . L 3 OLC A 1 2011 10 OLC OLC . M 4 OLA A 1 2012 101 OLA OLA . N 4 OLA A 1 2013 102 OLA OLA . O 4 OLA A 1 2014 103 OLA OLA . P 5 HOH A 1 2101 2107 HOH HOH . P 5 HOH A 2 2102 2113 HOH HOH . P 5 HOH A 3 2103 2101 HOH HOH . P 5 HOH A 4 2104 2110 HOH HOH . P 5 HOH A 5 2105 2105 HOH HOH . P 5 HOH A 6 2106 2104 HOH HOH . P 5 HOH A 7 2107 2114 HOH HOH . P 5 HOH A 8 2108 2111 HOH HOH . P 5 HOH A 9 2109 2102 HOH HOH . P 5 HOH A 10 2110 2116 HOH HOH . P 5 HOH A 11 2111 2108 HOH HOH . P 5 HOH A 12 2112 2112 HOH HOH . P 5 HOH A 13 2113 2103 HOH HOH . P 5 HOH A 14 2114 2117 HOH HOH . P 5 HOH A 15 2115 2106 HOH HOH . P 5 HOH A 16 2116 2109 HOH HOH . P 5 HOH A 17 2117 2115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . J 3 116.445 49.294 -12.821 1 56.78 ? C18 OLC 2009 A 1 HETATM 2 C C10 OLC . . . J 3 110.325 48.911 -5.907 1 93.78 ? C10 OLC 2009 A 1 HETATM 3 C C9 OLC . . . J 3 110.311 48.621 -4.61 1 101.66 ? C9 OLC 2009 A 1 HETATM 4 C C17 OLC . . . J 3 115.369 50.373 -12.71 1 63.32 ? C17 OLC 2009 A 1 HETATM 5 C C11 OLC . . . J 3 111.609 48.95 -6.744 1 74.15 ? C11 OLC 2009 A 1 HETATM 6 C C8 OLC . . . J 3 111.58 48.291 -3.821 1 100.53 ? C8 OLC 2009 A 1 HETATM 7 C C16 OLC . . . J 3 114.962 50.551 -11.246 1 62.77 ? C16 OLC 2009 A 1 HETATM 8 C C12 OLC . . . J 3 111.409 49.937 -7.9 1 69.78 ? C12 OLC 2009 A 1 HETATM 9 C C7 OLC . . . J 3 111.547 48.963 -2.443 1 96.58 ? C7 OLC 2009 A 1 HETATM 10 C C15 OLC . . . J 3 113.457 50.323 -11.086 1 52.3 ? C15 OLC 2009 A 1 HETATM 11 C C13 OLC . . . J 3 112.115 49.468 -9.171 1 64.36 ? C13 OLC 2009 A 1 HETATM 12 C C6 OLC . . . J 3 110.17 48.821 -1.789 1 102.71 ? C6 OLC 2009 A 1 HETATM 13 C C14 OLC . . . J 3 113.065 50.573 -9.631 1 48.61 ? C14 OLC 2009 A 1 HETATM 14 C C5 OLC . . . J 3 109.98 49.958 -0.782 1 90.09 ? C5 OLC 2009 A 1 HETATM 15 C C4 OLC . . . J 3 108.846 49.639 0.193 1 66.35 ? C4 OLC 2009 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #