data_6RZ9 # _model_server_result.job_id GwCzMNIpOqE1ZBhe6RN0XQ _model_server_result.datetime_utc '2025-03-01 08:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 6RZ9 # _exptl.entry_id 6RZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.601 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-8-[[4-[4-(5-fluoranyl-2-methyl-phenyl)butoxy]phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-butyl)-2,3-dih ydro-1,4-benzoxazine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ9 _cell.length_a 69.63 _cell.length_b 170.21 _cell.length_c 85.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C31 H33 F N2 O7' _chem_comp.formula_weight 564.601 _chem_comp.id KO5 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-8-[[4-[4-(5-fluoranyl-2-methyl-phenyl)butoxy]phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-butyl)-2,3-dih ydro-1,4-benzoxazine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ONO-2770372 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 KO5 doub 287 n n O2 C2 KO5 sing 288 n n C2 C1 KO5 sing 289 n n C19 C18 KO5 sing 290 n n C19 C20 KO5 sing 291 n n C18 O6 KO5 sing 292 n n C21 C20 KO5 sing 293 n n C21 C22 KO5 sing 294 n n C1 C3 KO5 sing 295 n n C1 O7 KO5 sing 296 n n O6 C17 KO5 sing 297 n n C16 C17 KO5 doub 298 n y C16 C15 KO5 sing 299 n y C3 N1 KO5 sing 300 n n C22 C23 KO5 doub 301 n y C22 C27 KO5 sing 302 n y C23 C24 KO5 sing 303 n y O7 C30 KO5 sing 304 n n C31 C27 KO5 sing 305 n n C17 C28 KO5 sing 306 n y C15 C14 KO5 doub 307 n y C27 C26 KO5 doub 308 n y O4 C7 KO5 doub 309 n n N1 C4 KO5 sing 310 n n N1 C8 KO5 sing 311 n n C24 F1 KO5 sing 312 n n C24 C25 KO5 doub 313 n y C30 C8 KO5 doub 314 n y C30 C12 KO5 sing 315 n y C28 C29 KO5 doub 316 n y C26 C25 KO5 sing 317 n y C14 C29 KO5 sing 318 n y C14 C13 KO5 sing 319 n n C4 C5 KO5 sing 320 n n N2 C12 KO5 sing 321 n n N2 C13 KO5 sing 322 n n C8 C9 KO5 sing 323 n y C7 O3 KO5 sing 324 n n C7 C6 KO5 sing 325 n n C12 C11 KO5 doub 326 n y C13 O5 KO5 doub 327 n n C5 C6 KO5 sing 328 n n C9 C10 KO5 doub 329 n y C11 C10 KO5 sing 330 n y C4 H1 KO5 sing 331 n n C4 H2 KO5 sing 332 n n C5 H3 KO5 sing 333 n n C5 H4 KO5 sing 334 n n C6 H5 KO5 sing 335 n n C6 H6 KO5 sing 336 n n C11 H7 KO5 sing 337 n n C9 H8 KO5 sing 338 n n C10 H9 KO5 sing 339 n n N2 H10 KO5 sing 340 n n C3 H11 KO5 sing 341 n n C3 H12 KO5 sing 342 n n C1 H13 KO5 sing 343 n n C15 H14 KO5 sing 344 n n C16 H15 KO5 sing 345 n n C18 H16 KO5 sing 346 n n C18 H17 KO5 sing 347 n n C19 H18 KO5 sing 348 n n C19 H19 KO5 sing 349 n n C20 H20 KO5 sing 350 n n C20 H21 KO5 sing 351 n n C21 H22 KO5 sing 352 n n C21 H23 KO5 sing 353 n n C23 H24 KO5 sing 354 n n C25 H25 KO5 sing 355 n n C26 H26 KO5 sing 356 n n C28 H27 KO5 sing 357 n n C29 H28 KO5 sing 358 n n C31 H29 KO5 sing 359 n n C31 H30 KO5 sing 360 n n C31 H31 KO5 sing 361 n n O2 H32 KO5 sing 362 n n O3 H33 KO5 sing 363 n n # _atom_sites.entry_id 6RZ9 _atom_sites.fract_transf_matrix[1][1] 0.014362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KO5 A 1 2001 2001 KO5 DRG . C 3 CLR A 1 2002 2003 CLR CLR . D 4 1PE A 1 2003 2201 1PE 1PE . E 5 OLC A 1 2004 1 OLC OLC . F 5 OLC A 1 2005 2 OLC OLC . G 5 OLC A 1 2006 3 OLC OLC . H 5 OLC A 1 2007 4 OLC OLC . I 5 OLC A 1 2008 5 OLC OLC . J 5 OLC A 1 2009 6 OLC OLC . K 5 OLC A 1 2010 7 OLC OLC . L 5 OLC A 1 2011 8 OLC OLC . M 5 OLC A 1 2012 10 OLC OLC . N 5 OLC A 1 2013 11 OLC OLC . O 5 OLC A 1 2014 12 OLC OLC . P 5 OLC A 1 2015 14 OLC OLC . Q 5 OLC A 1 2016 15 OLC OLC . R 6 OLA A 1 2017 101 OLA OLA . S 6 OLA A 1 2018 102 OLA OLA . T 6 OLA A 1 2019 103 OLA OLA . U 6 OLA A 1 2020 104 OLA OLA . V 6 OLA A 1 2021 107 OLA OLA . W 6 OLA A 1 2022 108 OLA OLA . X 6 OLA A 1 2023 109 OLA OLA . Y 7 HOH A 1 2101 2113 HOH HOH . Y 7 HOH A 2 2102 2102 HOH HOH . Y 7 HOH A 3 2103 2112 HOH HOH . Y 7 HOH A 4 2104 2110 HOH HOH . Y 7 HOH A 5 2105 2103 HOH HOH . Y 7 HOH A 6 2106 2107 HOH HOH . Y 7 HOH A 7 2107 2114 HOH HOH . Y 7 HOH A 8 2108 2108 HOH HOH . Y 7 HOH A 9 2109 2105 HOH HOH . Y 7 HOH A 10 2110 2101 HOH HOH . Y 7 HOH A 11 2111 2106 HOH HOH . Y 7 HOH A 12 2112 2111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 KO5 . . . B 2 -18.624 18.786 -19.852 1 88.83 ? C4 KO5 2001 A 1 HETATM 2 C C14 KO5 . . . B 2 -25.43 13.661 -19.908 1 73.49 ? C14 KO5 2001 A 1 HETATM 3 C C5 KO5 . . . B 2 -17.629 17.946 -19.064 1 90.55 ? C5 KO5 2001 A 1 HETATM 4 C C6 KO5 . . . B 2 -16.487 18.774 -18.497 1 90.27 ? C6 KO5 2001 A 1 HETATM 5 C C11 KO5 . . . B 2 -22.893 16.775 -17.984 1 79.99 ? C11 KO5 2001 A 1 HETATM 6 C C7 KO5 . . . B 2 -15.641 19.455 -19.557 1 97.42 ? C7 KO5 2001 A 1 HETATM 7 C C8 KO5 . . . B 2 -20.799 17.626 -19.602 1 87.61 ? C8 KO5 2001 A 1 HETATM 8 C C9 KO5 . . . B 2 -20.915 18.064 -18.279 1 86.46 ? C9 KO5 2001 A 1 HETATM 9 C C10 KO5 . . . B 2 -21.956 17.643 -17.488 1 85.83 ? C10 KO5 2001 A 1 HETATM 10 C C12 KO5 . . . B 2 -22.798 16.311 -19.283 1 79.44 ? C12 KO5 2001 A 1 HETATM 11 C C13 KO5 . . . B 2 -24.789 14.79 -19.17 1 77.4 ? C13 KO5 2001 A 1 HETATM 12 N N1 KO5 . . . B 2 -19.753 18.017 -20.404 1 82.83 ? N1 KO5 2001 A 1 HETATM 13 N N2 KO5 . . . B 2 -23.759 15.406 -19.803 1 79.18 ? N2 KO5 2001 A 1 HETATM 14 C C3 KO5 . . . B 2 -19.687 17.623 -21.814 1 86.64 ? C3 KO5 2001 A 1 HETATM 15 C C1 KO5 . . . B 2 -21.053 17.151 -22.307 1 90.13 ? C1 KO5 2001 A 1 HETATM 16 C C15 KO5 . . . B 2 -25.018 13.282 -21.181 1 75.14 ? C15 KO5 2001 A 1 HETATM 17 C C16 KO5 . . . B 2 -25.621 12.226 -21.836 1 77.84 ? C16 KO5 2001 A 1 HETATM 18 C C17 KO5 . . . B 2 -26.653 11.532 -21.222 1 75.69 ? C17 KO5 2001 A 1 HETATM 19 C C18 KO5 . . . B 2 -26.742 10.046 -23.114 1 78.89 ? C18 KO5 2001 A 1 HETATM 20 C C19 KO5 . . . B 2 -27.663 8.974 -23.634 1 72.3 ? C19 KO5 2001 A 1 HETATM 21 C C2 KO5 . . . B 2 -20.983 16.502 -23.686 1 107.08 ? C2 KO5 2001 A 1 HETATM 22 C C20 KO5 . . . B 2 -27.923 7.889 -22.611 1 71.25 ? C20 KO5 2001 A 1 HETATM 23 C C21 KO5 . . . B 2 -29.003 6.893 -22.998 1 71.05 ? C21 KO5 2001 A 1 HETATM 24 C C22 KO5 . . . B 2 -29.504 6.093 -21.81 1 70.2 ? C22 KO5 2001 A 1 HETATM 25 C C23 KO5 . . . B 2 -28.895 4.889 -21.467 1 69.56 ? C23 KO5 2001 A 1 HETATM 26 C C24 KO5 . . . B 2 -29.359 4.193 -20.38 1 70.92 ? C24 KO5 2001 A 1 HETATM 27 C C25 KO5 . . . B 2 -30.392 4.636 -19.601 1 79.65 ? C25 KO5 2001 A 1 HETATM 28 C C26 KO5 . . . B 2 -30.995 5.834 -19.937 1 70.66 ? C26 KO5 2001 A 1 HETATM 29 C C27 KO5 . . . B 2 -30.568 6.572 -21.029 1 70.06 ? C27 KO5 2001 A 1 HETATM 30 C C28 KO5 . . . B 2 -27.073 11.897 -19.952 1 70.08 ? C28 KO5 2001 A 1 HETATM 31 C C29 KO5 . . . B 2 -26.462 12.952 -19.305 1 71.26 ? C29 KO5 2001 A 1 HETATM 32 C C30 KO5 . . . B 2 -21.748 16.733 -20.101 1 80.9 ? C30 KO5 2001 A 1 HETATM 33 C C31 KO5 . . . B 2 -31.259 7.876 -21.351 1 76.45 ? C31 KO5 2001 A 1 HETATM 34 F F1 KO5 . . . B 2 -28.762 3.015 -20.058 1 77.94 ? F1 KO5 2001 A 1 HETATM 35 O O1 KO5 . . . B 2 -20.967 17.199 -24.672 1 113.77 ? O1 KO5 2001 A 1 HETATM 36 O O2 KO5 . . . B 2 -20.937 15.299 -23.781 1 108.62 -1 O2 KO5 2001 A 1 HETATM 37 O O3 KO5 . . . B 2 -15.541 20.697 -19.525 1 102.87 -1 O3 KO5 2001 A 1 HETATM 38 O O4 KO5 . . . B 2 -15.088 18.739 -20.415 1 106.14 ? O4 KO5 2001 A 1 HETATM 39 O O5 KO5 . . . B 2 -25.173 15.08 -18.043 1 79.38 ? O5 KO5 2001 A 1 HETATM 40 O O6 KO5 . . . B 2 -27.266 10.485 -21.856 1 77.23 ? O6 KO5 2001 A 1 HETATM 41 O O7 KO5 . . . B 2 -21.682 16.264 -21.386 1 81.86 ? O7 KO5 2001 A 1 # _model_server_stats.io_time_ms 185 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #