data_6RZ9 # _model_server_result.job_id MDKnJy0tqer4ZKg9OfOwqQ _model_server_result.datetime_utc '2025-03-01 08:15:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 6RZ9 # _exptl.entry_id 6RZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ9 _cell.length_a 69.63 _cell.length_b 170.21 _cell.length_c 85.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6RZ9 _atom_sites.fract_transf_matrix[1][1] 0.014362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KO5 A 1 2001 2001 KO5 DRG . C 3 CLR A 1 2002 2003 CLR CLR . D 4 1PE A 1 2003 2201 1PE 1PE . E 5 OLC A 1 2004 1 OLC OLC . F 5 OLC A 1 2005 2 OLC OLC . G 5 OLC A 1 2006 3 OLC OLC . H 5 OLC A 1 2007 4 OLC OLC . I 5 OLC A 1 2008 5 OLC OLC . J 5 OLC A 1 2009 6 OLC OLC . K 5 OLC A 1 2010 7 OLC OLC . L 5 OLC A 1 2011 8 OLC OLC . M 5 OLC A 1 2012 10 OLC OLC . N 5 OLC A 1 2013 11 OLC OLC . O 5 OLC A 1 2014 12 OLC OLC . P 5 OLC A 1 2015 14 OLC OLC . Q 5 OLC A 1 2016 15 OLC OLC . R 6 OLA A 1 2017 101 OLA OLA . S 6 OLA A 1 2018 102 OLA OLA . T 6 OLA A 1 2019 103 OLA OLA . U 6 OLA A 1 2020 104 OLA OLA . V 6 OLA A 1 2021 107 OLA OLA . W 6 OLA A 1 2022 108 OLA OLA . X 6 OLA A 1 2023 109 OLA OLA . Y 7 HOH A 1 2101 2113 HOH HOH . Y 7 HOH A 2 2102 2102 HOH HOH . Y 7 HOH A 3 2103 2112 HOH HOH . Y 7 HOH A 4 2104 2110 HOH HOH . Y 7 HOH A 5 2105 2103 HOH HOH . Y 7 HOH A 6 2106 2107 HOH HOH . Y 7 HOH A 7 2107 2114 HOH HOH . Y 7 HOH A 8 2108 2108 HOH HOH . Y 7 HOH A 9 2109 2105 HOH HOH . Y 7 HOH A 10 2110 2101 HOH HOH . Y 7 HOH A 11 2111 2106 HOH HOH . Y 7 HOH A 12 2112 2111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 1PE . . . D 4 -12.58 -23.274 0.656 1 110.72 ? C12 1PE 2003 A 1 HETATM 2 C C22 1PE . . . D 4 -13.543 -23.809 1.712 1 119.53 ? C22 1PE 2003 A 1 HETATM 3 O OH3 1PE . . . D 4 -14.318 -24.865 1.147 1 117.14 ? OH3 1PE 2003 A 1 HETATM 4 C C13 1PE . . . D 4 -15.542 -26.891 1.465 1 98.04 ? C13 1PE 2003 A 1 HETATM 5 C C23 1PE . . . D 4 -15.011 -25.629 2.133 1 104.91 ? C23 1PE 2003 A 1 HETATM 6 O OH4 1PE . . . D 4 -15.139 -28.043 2.198 1 96.79 ? OH4 1PE 2003 A 1 HETATM 7 C C14 1PE . . . D 4 -13.61 -29.798 1.484 1 122.57 ? C14 1PE 2003 A 1 HETATM 8 C C24 1PE . . . D 4 -13.777 -28.348 1.917 1 107.21 ? C24 1PE 2003 A 1 HETATM 9 O OH5 1PE . . . D 4 -12.221 -30.111 1.552 1 133.45 ? OH5 1PE 2003 A 1 HETATM 10 C C15 1PE . . . D 4 -10.239 -30.998 0.531 1 130.95 ? C15 1PE 2003 A 1 HETATM 11 C C25 1PE . . . D 4 -11.74 -30.769 0.382 1 134.09 ? C25 1PE 2003 A 1 HETATM 12 O OH6 1PE . . . D 4 -9.57 -29.747 0.67 1 123.34 ? OH6 1PE 2003 A 1 HETATM 13 C C26 1PE . . . D 4 -8.253 -29.907 1.193 1 114.88 ? C26 1PE 2003 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #