data_6RZ9 # _model_server_result.job_id LxhnncetrGidbwZhywoy7g _model_server_result.datetime_utc '2025-03-01 08:07:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2012}' # _entry.id 6RZ9 # _exptl.entry_id 6RZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZ9 _cell.length_a 69.63 _cell.length_b 170.21 _cell.length_c 85.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 31 1_555 A SG CYS 362 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 95 A CYS 111 1_555 A SG CYS 171 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 481 n n C10 C9 OLC doub 482 n n C10 C11 OLC sing 483 n n C9 C8 OLC sing 484 n n C17 C16 OLC sing 485 z n C11 C12 OLC sing 486 n n C8 C7 OLC sing 487 n n C24 C22 OLC sing 488 n n C24 O25 OLC sing 489 n n C16 C15 OLC sing 490 n n C12 C13 OLC sing 491 n n C7 C6 OLC sing 492 n n C15 C14 OLC sing 493 n n C13 C14 OLC sing 494 n n C6 C5 OLC sing 495 n n C5 C4 OLC sing 496 n n C4 C3 OLC sing 497 n n C3 C2 OLC sing 498 n n C2 C1 OLC sing 499 n n C21 C22 OLC sing 500 n n C21 O20 OLC sing 501 n n C1 O19 OLC doub 502 n n C1 O20 OLC sing 503 n n C22 O23 OLC sing 504 n n C18 H18 OLC sing 505 n n C18 H18A OLC sing 506 n n C18 H18B OLC sing 507 n n C10 H10 OLC sing 508 n n C9 H9 OLC sing 509 n n C17 H17 OLC sing 510 n n C17 H17A OLC sing 511 n n C11 H11 OLC sing 512 n n C11 H11A OLC sing 513 n n C8 H8 OLC sing 514 n n C8 H8A OLC sing 515 n n C24 H24 OLC sing 516 n n C24 H24A OLC sing 517 n n C16 H16 OLC sing 518 n n C16 H16A OLC sing 519 n n C12 H12 OLC sing 520 n n C12 H12A OLC sing 521 n n C7 H7 OLC sing 522 n n C7 H7A OLC sing 523 n n C15 H15 OLC sing 524 n n C15 H15A OLC sing 525 n n C13 H13 OLC sing 526 n n C13 H13A OLC sing 527 n n C6 H6 OLC sing 528 n n C6 H6A OLC sing 529 n n C14 H14 OLC sing 530 n n C14 H14A OLC sing 531 n n C5 H5 OLC sing 532 n n C5 H5A OLC sing 533 n n C4 H4 OLC sing 534 n n C4 H4A OLC sing 535 n n C3 H3 OLC sing 536 n n C3 H3A OLC sing 537 n n C2 H2 OLC sing 538 n n C2 H2A OLC sing 539 n n C21 H21 OLC sing 540 n n C21 H21A OLC sing 541 n n C22 H22 OLC sing 542 n n O25 HO25 OLC sing 543 n n O23 HO23 OLC sing 544 n n # _atom_sites.entry_id 6RZ9 _atom_sites.fract_transf_matrix[1][1] 0.014362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KO5 A 1 2001 2001 KO5 DRG . C 3 CLR A 1 2002 2003 CLR CLR . D 4 1PE A 1 2003 2201 1PE 1PE . E 5 OLC A 1 2004 1 OLC OLC . F 5 OLC A 1 2005 2 OLC OLC . G 5 OLC A 1 2006 3 OLC OLC . H 5 OLC A 1 2007 4 OLC OLC . I 5 OLC A 1 2008 5 OLC OLC . J 5 OLC A 1 2009 6 OLC OLC . K 5 OLC A 1 2010 7 OLC OLC . L 5 OLC A 1 2011 8 OLC OLC . M 5 OLC A 1 2012 10 OLC OLC . N 5 OLC A 1 2013 11 OLC OLC . O 5 OLC A 1 2014 12 OLC OLC . P 5 OLC A 1 2015 14 OLC OLC . Q 5 OLC A 1 2016 15 OLC OLC . R 6 OLA A 1 2017 101 OLA OLA . S 6 OLA A 1 2018 102 OLA OLA . T 6 OLA A 1 2019 103 OLA OLA . U 6 OLA A 1 2020 104 OLA OLA . V 6 OLA A 1 2021 107 OLA OLA . W 6 OLA A 1 2022 108 OLA OLA . X 6 OLA A 1 2023 109 OLA OLA . Y 7 HOH A 1 2101 2113 HOH HOH . Y 7 HOH A 2 2102 2102 HOH HOH . Y 7 HOH A 3 2103 2112 HOH HOH . Y 7 HOH A 4 2104 2110 HOH HOH . Y 7 HOH A 5 2105 2103 HOH HOH . Y 7 HOH A 6 2106 2107 HOH HOH . Y 7 HOH A 7 2107 2114 HOH HOH . Y 7 HOH A 8 2108 2108 HOH HOH . Y 7 HOH A 9 2109 2105 HOH HOH . Y 7 HOH A 10 2110 2101 HOH HOH . Y 7 HOH A 11 2111 2106 HOH HOH . Y 7 HOH A 12 2112 2111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . M 5 -9.103 -6.301 -5.299 1 90.48 ? C10 OLC 2012 A 1 HETATM 2 C C9 OLC . . . M 5 -9.824 -7.195 -4.655 1 88.56 ? C9 OLC 2012 A 1 HETATM 3 C C8 OLC . . . M 5 -10.289 -8.465 -5.366 1 82.61 ? C8 OLC 2012 A 1 HETATM 4 C C24 OLC . . . M 5 -14.07 -20.098 -2.124 1 103.85 ? C24 OLC 2012 A 1 HETATM 5 C C7 OLC . . . M 5 -10.692 -9.503 -4.321 1 91.34 ? C7 OLC 2012 A 1 HETATM 6 C C6 OLC . . . M 5 -11.144 -10.794 -5.001 1 84.23 ? C6 OLC 2012 A 1 HETATM 7 C C5 OLC . . . M 5 -11.563 -11.788 -3.92 1 80.68 ? C5 OLC 2012 A 1 HETATM 8 C C4 OLC . . . M 5 -11.716 -13.186 -4.511 1 83.14 ? C4 OLC 2012 A 1 HETATM 9 C C3 OLC . . . M 5 -12.002 -14.168 -3.377 1 83.33 ? C3 OLC 2012 A 1 HETATM 10 C C2 OLC . . . M 5 -12.661 -15.422 -3.946 1 90.77 ? C2 OLC 2012 A 1 HETATM 11 C C21 OLC . . . M 5 -13.988 -17.663 -1.62 1 121.65 ? C21 OLC 2012 A 1 HETATM 12 C C1 OLC . . . M 5 -12.423 -16.601 -3.005 1 109.51 ? C1 OLC 2012 A 1 HETATM 13 C C22 OLC . . . M 5 -14.84 -18.926 -1.519 1 112.97 ? C22 OLC 2012 A 1 HETATM 14 O O19 OLC . . . M 5 -11.421 -16.666 -2.377 1 118.78 ? O19 OLC 2012 A 1 HETATM 15 O O25 OLC . . . M 5 -14.975 -21.032 -2.646 1 85 ? O25 OLC 2012 A 1 HETATM 16 O O23 OLC . . . M 5 -15.122 -19.19 -0.173 1 107.88 ? O23 OLC 2012 A 1 HETATM 17 O O20 OLC . . . M 5 -13.387 -17.606 -2.882 1 120.56 ? O20 OLC 2012 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #