data_6RZM # _model_server_result.job_id dqZB5UviOspfQOmZLvHFFw _model_server_result.datetime_utc '2024-11-16 01:19:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rzm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RZM # _exptl.entry_id 6RZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 579.331 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-(3-iodanylphenyl)sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RZM _cell.length_a 36.07 _cell.length_b 57.238 _cell.length_c 61.655 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H17 F3 I N3 O4 S' _chem_comp.formula_weight 579.331 _chem_comp.id KON _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-(3-iodanylphenyl)sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 KON doub 173 n y C3 C6 KON sing 174 n y C2 C1 KON sing 175 n y S1 C6 KON sing 176 n n S1 C7 KON sing 177 n n C6 C5 KON doub 178 n y C1 C4 KON doub 179 n y C5 C4 KON sing 180 n y C4 I1 KON sing 181 n n N3 N2 KON doub 182 n y N3 N1 KON sing 183 n y O4 C20 KON sing 184 n n N2 C13 KON sing 185 n y C11 N1 KON sing 186 n n C11 C20 KON sing 187 n n C11 C10 KON sing 188 n n C7 C20 KON sing 189 n n C7 O1 KON sing 190 n n N1 C12 KON sing 191 n y C8 C10 KON sing 192 n n C8 O1 KON sing 193 n n C8 C9 KON sing 194 n n C13 C12 KON doub 195 n y C13 C14 KON sing 196 n n C10 O3 KON sing 197 n n C15 C14 KON doub 198 n y C15 C16 KON sing 199 n y F1 C16 KON sing 200 n n O2 C9 KON sing 201 n n C14 C19 KON sing 202 n y C16 C17 KON doub 203 n y C19 C18 KON doub 204 n y C17 C18 KON sing 205 n y C17 F3 KON sing 206 n n C18 F2 KON sing 207 n n C5 H1 KON sing 208 n n C7 H2 KON sing 209 n n C8 H3 KON sing 210 n n C10 H4 KON sing 211 n n C15 H5 KON sing 212 n n C20 H6 KON sing 213 n n C1 H7 KON sing 214 n n C11 H8 KON sing 215 n n C12 H9 KON sing 216 n n C19 H10 KON sing 217 n n C2 H11 KON sing 218 n n C3 H12 KON sing 219 n n C9 H13 KON sing 220 n n C9 H14 KON sing 221 n n O2 H15 KON sing 222 n n O3 H16 KON sing 223 n n O4 H17 KON sing 224 n n # _atom_sites.entry_id 6RZM _atom_sites.fract_transf_matrix[1][1] 0.027724 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KON A 1 301 301 KON LIG . C 3 PEG A 1 302 401 PEG PEG . D 4 CL A 1 303 1 CL CL . E 5 HOH A 1 401 67 HOH HOH . E 5 HOH A 2 402 134 HOH HOH . E 5 HOH A 3 403 16 HOH HOH . E 5 HOH A 4 404 170 HOH HOH . E 5 HOH A 5 405 19 HOH HOH . E 5 HOH A 6 406 91 HOH HOH . E 5 HOH A 7 407 20 HOH HOH . E 5 HOH A 8 408 167 HOH HOH . E 5 HOH A 9 409 49 HOH HOH . E 5 HOH A 10 410 11 HOH HOH . E 5 HOH A 11 411 117 HOH HOH . E 5 HOH A 12 412 111 HOH HOH . E 5 HOH A 13 413 65 HOH HOH . E 5 HOH A 14 414 34 HOH HOH . E 5 HOH A 15 415 75 HOH HOH . E 5 HOH A 16 416 6 HOH HOH . E 5 HOH A 17 417 129 HOH HOH . E 5 HOH A 18 418 5 HOH HOH . E 5 HOH A 19 419 14 HOH HOH . E 5 HOH A 20 420 54 HOH HOH . E 5 HOH A 21 421 56 HOH HOH . E 5 HOH A 22 422 9 HOH HOH . E 5 HOH A 23 423 84 HOH HOH . E 5 HOH A 24 424 90 HOH HOH . E 5 HOH A 25 425 94 HOH HOH . E 5 HOH A 26 426 50 HOH HOH . E 5 HOH A 27 427 13 HOH HOH . E 5 HOH A 28 428 31 HOH HOH . E 5 HOH A 29 429 53 HOH HOH . E 5 HOH A 30 430 35 HOH HOH . E 5 HOH A 31 431 58 HOH HOH . E 5 HOH A 32 432 113 HOH HOH . E 5 HOH A 33 433 29 HOH HOH . E 5 HOH A 34 434 64 HOH HOH . E 5 HOH A 35 435 52 HOH HOH . E 5 HOH A 36 436 24 HOH HOH . E 5 HOH A 37 437 44 HOH HOH . E 5 HOH A 38 438 59 HOH HOH . E 5 HOH A 39 439 39 HOH HOH . E 5 HOH A 40 440 126 HOH HOH . E 5 HOH A 41 441 68 HOH HOH . E 5 HOH A 42 442 168 HOH HOH . E 5 HOH A 43 443 43 HOH HOH . E 5 HOH A 44 444 2 HOH HOH . E 5 HOH A 45 445 23 HOH HOH . E 5 HOH A 46 446 106 HOH HOH . E 5 HOH A 47 447 21 HOH HOH . E 5 HOH A 48 448 7 HOH HOH . E 5 HOH A 49 449 55 HOH HOH . E 5 HOH A 50 450 1 HOH HOH . E 5 HOH A 51 451 4 HOH HOH . E 5 HOH A 52 452 12 HOH HOH . E 5 HOH A 53 453 71 HOH HOH . E 5 HOH A 54 454 82 HOH HOH . E 5 HOH A 55 455 18 HOH HOH . E 5 HOH A 56 456 8 HOH HOH . E 5 HOH A 57 457 47 HOH HOH . E 5 HOH A 58 458 62 HOH HOH . E 5 HOH A 59 459 173 HOH HOH . E 5 HOH A 60 460 15 HOH HOH . E 5 HOH A 61 461 57 HOH HOH . E 5 HOH A 62 462 60 HOH HOH . E 5 HOH A 63 463 77 HOH HOH . E 5 HOH A 64 464 102 HOH HOH . E 5 HOH A 65 465 38 HOH HOH . E 5 HOH A 66 466 72 HOH HOH . E 5 HOH A 67 467 33 HOH HOH . E 5 HOH A 68 468 22 HOH HOH . E 5 HOH A 69 469 100 HOH HOH . E 5 HOH A 70 470 175 HOH HOH . E 5 HOH A 71 471 162 HOH HOH . E 5 HOH A 72 472 159 HOH HOH . E 5 HOH A 73 473 116 HOH HOH . E 5 HOH A 74 474 78 HOH HOH . E 5 HOH A 75 475 172 HOH HOH . E 5 HOH A 76 476 46 HOH HOH . E 5 HOH A 77 477 63 HOH HOH . E 5 HOH A 78 478 3 HOH HOH . E 5 HOH A 79 479 138 HOH HOH . E 5 HOH A 80 480 80 HOH HOH . E 5 HOH A 81 481 42 HOH HOH . E 5 HOH A 82 482 89 HOH HOH . E 5 HOH A 83 483 83 HOH HOH . E 5 HOH A 84 484 25 HOH HOH . E 5 HOH A 85 485 66 HOH HOH . E 5 HOH A 86 486 101 HOH HOH . E 5 HOH A 87 487 36 HOH HOH . E 5 HOH A 88 488 73 HOH HOH . E 5 HOH A 89 489 153 HOH HOH . E 5 HOH A 90 490 108 HOH HOH . E 5 HOH A 91 491 41 HOH HOH . E 5 HOH A 92 492 143 HOH HOH . E 5 HOH A 93 493 137 HOH HOH . E 5 HOH A 94 494 27 HOH HOH . E 5 HOH A 95 495 17 HOH HOH . E 5 HOH A 96 496 128 HOH HOH . E 5 HOH A 97 497 26 HOH HOH . E 5 HOH A 98 498 76 HOH HOH . E 5 HOH A 99 499 37 HOH HOH . E 5 HOH A 100 500 48 HOH HOH . E 5 HOH A 101 501 131 HOH HOH . E 5 HOH A 102 502 146 HOH HOH . E 5 HOH A 103 503 28 HOH HOH . E 5 HOH A 104 504 45 HOH HOH . E 5 HOH A 105 505 85 HOH HOH . E 5 HOH A 106 506 51 HOH HOH . E 5 HOH A 107 507 171 HOH HOH . E 5 HOH A 108 508 10 HOH HOH . E 5 HOH A 109 509 98 HOH HOH . E 5 HOH A 110 510 148 HOH HOH . E 5 HOH A 111 511 140 HOH HOH . E 5 HOH A 112 512 104 HOH HOH . E 5 HOH A 113 513 174 HOH HOH . E 5 HOH A 114 514 97 HOH HOH . E 5 HOH A 115 515 32 HOH HOH . E 5 HOH A 116 516 145 HOH HOH . E 5 HOH A 117 517 95 HOH HOH . E 5 HOH A 118 518 163 HOH HOH . E 5 HOH A 119 519 161 HOH HOH . E 5 HOH A 120 520 141 HOH HOH . E 5 HOH A 121 521 118 HOH HOH . E 5 HOH A 122 522 74 HOH HOH . E 5 HOH A 123 523 158 HOH HOH . E 5 HOH A 124 524 127 HOH HOH . E 5 HOH A 125 525 70 HOH HOH . E 5 HOH A 126 526 103 HOH HOH . E 5 HOH A 127 527 107 HOH HOH . E 5 HOH A 128 528 86 HOH HOH . E 5 HOH A 129 529 122 HOH HOH . E 5 HOH A 130 530 132 HOH HOH . E 5 HOH A 131 531 125 HOH HOH . E 5 HOH A 132 532 144 HOH HOH . E 5 HOH A 133 533 165 HOH HOH . E 5 HOH A 134 534 112 HOH HOH . E 5 HOH A 135 535 169 HOH HOH . E 5 HOH A 136 536 69 HOH HOH . E 5 HOH A 137 537 30 HOH HOH . E 5 HOH A 138 538 130 HOH HOH . E 5 HOH A 139 539 109 HOH HOH . E 5 HOH A 140 540 79 HOH HOH . E 5 HOH A 141 541 40 HOH HOH . E 5 HOH A 142 542 99 HOH HOH . E 5 HOH A 143 543 124 HOH HOH . E 5 HOH A 144 544 96 HOH HOH . E 5 HOH A 145 545 121 HOH HOH . E 5 HOH A 146 546 120 HOH HOH . E 5 HOH A 147 547 81 HOH HOH . E 5 HOH A 148 548 166 HOH HOH . E 5 HOH A 149 549 87 HOH HOH . E 5 HOH A 150 550 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KON . . . B 2 -16.534 8.031 -1.801 1 20.11 ? N1 KON 301 A 1 HETATM 2 N N3 KON . . . B 2 -15.683 7.756 -2.821 1 21.95 ? N3 KON 301 A 1 HETATM 3 C C4 KON . . . B 2 -24.466 7.443 -3.151 1 28 ? C4 KON 301 A 1 HETATM 4 C C5 KON . . . B 2 -23.088 7.509 -3.216 1 24.98 ? C5 KON 301 A 1 HETATM 5 C C6 KON . . . B 2 -22.462 8.715 -3.501 1 24.83 ? C6 KON 301 A 1 HETATM 6 C C7 KON . . . B 2 -20.269 8.935 -1.803 1 20.63 ? C7 KON 301 A 1 HETATM 7 C C8 KON . . . B 2 -20.014 6.591 -1.299 1 18.96 ? C8 KON 301 A 1 HETATM 8 C C10 KON . . . B 2 -18.52 6.749 -1.075 1 17.86 ? C10 KON 301 A 1 HETATM 9 C C13 KON . . . B 2 -14.52 8.371 -1.1 1 19.87 ? C13 KON 301 A 1 HETATM 10 C C15 KON . . . B 2 -12.1 8.857 -0.988 1 20.58 ? C15 KON 301 A 1 HETATM 11 C C17 KON . . . B 2 -10.999 9.164 1.108 1 21.29 ? C17 KON 301 A 1 HETATM 12 C C20 KON . . . B 2 -18.761 9.168 -1.67 1 21.67 ? C20 KON 301 A 1 HETATM 13 C C1 KON . . . B 2 -25.241 8.569 -3.366 1 29.12 ? C1 KON 301 A 1 HETATM 14 C C11 KON . . . B 2 -17.988 7.877 -1.957 1 19.71 ? C11 KON 301 A 1 HETATM 15 C C12 KON . . . B 2 -15.842 8.388 -0.743 1 19.99 ? C12 KON 301 A 1 HETATM 16 C C14 KON . . . B 2 -13.309 8.663 -0.328 1 18.88 ? C14 KON 301 A 1 HETATM 17 C C16 KON . . . B 2 -10.969 9.114 -0.261 1 22.55 ? C16 KON 301 A 1 HETATM 18 C C18 KON . . . B 2 -12.19 8.957 1.756 1 19.8 ? C18 KON 301 A 1 HETATM 19 C C19 KON . . . B 2 -13.345 8.701 1.062 1 18.63 ? C19 KON 301 A 1 HETATM 20 C C2 KON . . . B 2 -24.615 9.773 -3.65 1 28.46 ? C2 KON 301 A 1 HETATM 21 C C3 KON . . . B 2 -23.234 9.845 -3.717 1 27.47 ? C3 KON 301 A 1 HETATM 22 C C9 KON . . . B 2 -20.622 5.524 -0.419 1 18.41 ? C9 KON 301 A 1 HETATM 23 F F1 KON . . . B 2 -9.801 9.316 -0.901 1 25.68 ? F1 KON 301 A 1 HETATM 24 F F2 KON . . . B 2 -12.22 9.004 3.102 1 20.58 ? F2 KON 301 A 1 HETATM 25 F F3 KON . . . B 2 -9.877 9.413 1.804 1 23.5 ? F3 KON 301 A 1 HETATM 26 I I1 KON . . . B 2 -25.374 5.604 -2.723 1 26.84 ? I1 KON 301 A 1 HETATM 27 N N2 KON . . . B 2 -14.457 7.962 -2.394 1 21.74 ? N2 KON 301 A 1 HETATM 28 O O1 KON . . . B 2 -20.681 7.832 -1.004 1 19.04 ? O1 KON 301 A 1 HETATM 29 O O2 KON . . . B 2 -21.993 5.299 -0.734 1 18.56 ? O2 KON 301 A 1 HETATM 30 O O3 KON . . . B 2 -18.259 7.03 0.301 1 17.07 ? O3 KON 301 A 1 HETATM 31 O O4 KON . . . B 2 -18.316 10.231 -2.512 1 23.11 ? O4 KON 301 A 1 HETATM 32 S S1 KON . . . B 2 -20.688 8.763 -3.571 1 23.25 ? S1 KON 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #